Rroxscaffold_4G00319490

Testis-expressed sequence 10 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0001389
Physical Location & Seq
Forward (+)
47389861 .. 47479420
89560 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00319490.1

Sequence Viewer

Length: 1209 bp
ATGGAGGAGATGGTTGTTCCTAGACAAGGCATGCTGTACCTGGATCCAAGGGATCCCGAGATGTTATACTTTCAGATTGCCTGGATAAGAGAGCTTCCCATGTTGCTAATCCTGCTGGGTGATAAGAACACGTCCCACTCCCAGGTTGTGTTACACCTTTTACTTCACCTGGGACAGCGTGCTTTCATGAACTATTCCTTTGCATTGGAATATGACAACATGCAATTCTCATTGCAAGAATTTTTCTGCATATATCAAGATGATGGAAATATAATATATGGTCCTTTTGTAAGGCTGCCCAGAGAATCTCAGGAACTCTCTCTTTGTTGCCTTCGTTATATCTCTAATTTGGATTTGCATATGTTGAGGTCAATAGCTTATTGTTGCCTATGTCCAGAATTGGAACAGTATGTAATAATTCGAGTCATAGAGATCCTGCATTCAGCTTATAAATCTGGACATATTCAAATTGCGGATCACATTAGTTTCTTCATCACCTTGCTCTCCCGCTTCAAAGTTTTGCCAGAAAATGTTAATGCTGTTATGGAGAGAGATGTGAATATCTCAAATCGGGGGACTTTTAAATCAATCACTGGCATTGTTTGCTCGTGTCTGTCACAGATGGGCGATAGTTCTCTTGTTTTTAAAATACTAGAAAAAATGGTACTGGATCAAATGTTGCAAAACCTTCCGCTAGACAATATCTGTGCTATGCTTAGGATGCTTATTGCACTGGACTCTGAAGAGACAATAATTTCTGAACAAGCTTTTGTAAGCTTAGTCAAAATCGTTCCGCGATATCTTATAGACATTGTGCATTGCATTGCTGAAGATGATGGGAAGGCCTCTGGTTCCCTTTCCTCGAGTGCATGCTGTTATTATCTTGTTCCTTGCTTTTTCTTATTTGTTAAAAGTCACAGACTTCTGGGTCTTGTGTTGAAGACGTTGGGGTCATGGATAAATGAAAGTTTGTCAATTTTACCTTGCGATCATACCCACTATGAAACAGACATTTCAAGCAGGGTAGAAACAATCGTTTCAGTTCTTCTCTTGTTGCCTAAGGATGACAAAATTTGGCAAGTTATGTCTTCATTCAAGGCAGAGATTGACTGTATTTTGCAAAGCATCATCTCTATACAGTCCTCAGAGGAAATCAGCATGACCCTTCAAGAAAAGCACAAATTGAAATGTGCGCGCATGATAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ipi1_N

Protein Analysis

402

Amino Acids

46.05

Weight (kDa)

5.32

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_TEX10 PF25781 27 - 384 6.6e-18 TEX10-like, TPR repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 450
AasI GACNNNNNNGTC 2 cut(s) 927, 949
AccII CGCG 2 cut(s) 796, 1195
AciI CCGC 4 cut(s) 473, 508, 692, 794
AclWI GGATC 7 cut(s) 38, 47, 51, 60, 427, 483, 678
AcsI RAATTY 2 cut(s) 239, 1071
AcuI CTGAAG 2 cut(s) 762, 849
AfaI GTAC 2 cut(s) 38, 666
AfiI CCNNNNNNNGG 2 cut(s) 26, 142
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 7 cut(s) 467, 514, 940, 1017, 1096, 1169, 1186
AjiI CACGTC 1 cut(s) 132
AjnI CCWGG 4 cut(s) 39, 80, 141, 168
AluBI AGCT 5 cut(s) 94, 377, 446, 767, 777
AluI AGCT 5 cut(s) 94, 377, 446, 767, 777
Alw26I GTCTC 1 cut(s) 740
AlwI GGATC 7 cut(s) 38, 47, 51, 60, 427, 483, 678
Ama87I CYCGRG 2 cut(s) 56, 862
AoxI GGCC 1 cut(s) 843
ApeKI GCWGC 1 cut(s) 295
ApoI RAATTY 2 cut(s) 239, 1071
AspLEI GCGC 2 cut(s) 1195, 1197
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 3 cut(s) 131, 158, 487
AvaI CYCGRG 2 cut(s) 56, 862
AvaII GGWCC 1 cut(s) 281
AxyI CCTNAGG 1 cut(s) 1059
BamHI GGATCC 2 cut(s) 43, 52
BauI CACGAG 1 cut(s) 607
BbsI GAAGAC 2 cut(s) 947, 1080
BbvI GCAGC 1 cut(s) 282
BccI CCATC 4 cut(s) 4, 257, 616, 830
BciT130I CCWGG 4 cut(s) 41, 82, 143, 170
BcoDI GTCTC 1 cut(s) 740
BfaI CTAG 4 cut(s) 21, 653, 695, 1207
BisI GCNGC 1 cut(s) 296
BlsI GCNGC 1 cut(s) 297
Bme1390I CCNGG 4 cut(s) 41, 82, 143, 170
Bme18I GGWCC 1 cut(s) 281
BmeT110I CYCGRG 2 cut(s) 56, 862
BmgBI CACGTC 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 3 cut(s) 45, 54, 853
BmrFI CCNGG 4 cut(s) 41, 82, 143, 170
BmsI GCATC 2 cut(s) 711, 1134
BpiI GAAGAC 2 cut(s) 947, 1080
Bpu10I CCTNAGC 1 cut(s) 716
BsaJI CCNNGG 3 cut(s) 47, 141, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 142
Bse1I ACTGG 3 cut(s) 598, 672, 738
Bse21I CCTNAGG 1 cut(s) 1059
Bse3DI GCAATG 3 cut(s) 230, 817, 822
BseBI CCWGG 4 cut(s) 41, 82, 143, 170
BseDI CCNNGG 3 cut(s) 47, 141, 169
BseGI GGATG 2 cut(s) 726, 1069
BseLI CCNNNNNNNGG 2 cut(s) 26, 142
BseMI GCAATG 3 cut(s) 230, 817, 822
BseMII CTCAG 2 cut(s) 323, 1158
BseNI ACTGG 3 cut(s) 598, 672, 738
BsePI GCGCGC 1 cut(s) 1193
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 282
BseYI CCCAGC 1 cut(s) 115
Bsh1236I CGCG 2 cut(s) 796, 1195
BshFI GGCC 1 cut(s) 845
BsiHKCI CYCGRG 2 cut(s) 56, 862
BslFI GGGAC 3 cut(s) 118, 186, 589
BslI CCNNNNNNNGG 2 cut(s) 26, 142
BsmAI GTCTC 1 cut(s) 740
BsmFI GGGAC 3 cut(s) 118, 186, 589
BsmI GAATGC 1 cut(s) 439
BsnI GGCC 1 cut(s) 845
BsoBI CYCGRG 2 cut(s) 56, 862
Bsp143I GATC 6 cut(s) 43, 52, 432, 475, 670, 988
BspACI CCGC 4 cut(s) 473, 508, 692, 794
BspANI GGCC 1 cut(s) 845
BspCNI CTCAG 2 cut(s) 322, 1157
BspFNI CGCG 2 cut(s) 796, 1195
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 3 cut(s) 45, 54, 853
BspPI GGATC 7 cut(s) 38, 47, 51, 60, 427, 483, 678
BsrDI GCAATG 3 cut(s) 230, 817, 822
BsrI ACTGG 3 cut(s) 598, 672, 738
BssECI CCNNGG 3 cut(s) 47, 141, 169
BssHII GCGCGC 1 cut(s) 1193
BssMI GATC 6 cut(s) 43, 52, 432, 475, 670, 988
BssSI CACGAG 1 cut(s) 607
BssT1I CCWWGG 1 cut(s) 47
Bst2BI CACGAG 1 cut(s) 607
Bst2UI CCWGG 4 cut(s) 41, 82, 143, 170
Bst4CI ACNGT 3 cut(s) 408, 1112, 1140
Bst6I CTCTTC 1 cut(s) 738
BstAPI GCANNNNNTGC 1 cut(s) 603
BstC8I GCNNGC 4 cut(s) 32, 180, 871, 1195
BstDEI CTNAG 5 cut(s) 309, 716, 778, 1059, 1144
BstENI CCTNNNNNAGG 1 cut(s) 24
BstF5I GGATG 2 cut(s) 726, 1069
BstFNI CGCG 2 cut(s) 796, 1195
BstHHI GCGC 2 cut(s) 1195, 1197
BstKTI GATC 6 cut(s) 46, 55, 435, 478, 673, 991
BstMAI GTCTC 1 cut(s) 740
BstMBI GATC 6 cut(s) 43, 52, 432, 475, 670, 988
BstMWI GCNNNNNNNGC 3 cut(s) 112, 603, 721
BstNI CCWGG 4 cut(s) 41, 82, 143, 170
BstNSI RCATGY 3 cut(s) 34, 223, 873
BstSCI CCNGG 4 cut(s) 39, 80, 141, 168
BstUI CGCG 2 cut(s) 796, 1195
BstV1I GCAGC 1 cut(s) 282
BstV2I GAAGAC 2 cut(s) 947, 1080
BstX2I RGATCY 3 cut(s) 43, 52, 432
BstYI RGATCY 3 cut(s) 43, 52, 432
Bsu36I CCTNAGG 1 cut(s) 1059
BsuRI GGCC 1 cut(s) 845
BtrI CACGTC 1 cut(s) 132
BtsCI GGATG 2 cut(s) 726, 1069
BtsIMutI CAGTG 2 cut(s) 591, 731
Cac8I GCNNGC 4 cut(s) 32, 180, 871, 1195
CciI TCATGA 1 cut(s) 186
CfoI GCGC 2 cut(s) 1195, 1197
Cfr13I GGNCC 1 cut(s) 281
Csp6I GTAC 2 cut(s) 37, 665
CviAII CATG 8 cut(s) 31, 100, 187, 220, 870, 954, 1159, 1198
CviJI RGCY 7 cut(s) 94, 295, 377, 446, 767, 777, 845
CviKI_1 RGCY 7 cut(s) 94, 295, 377, 446, 767, 777, 845
CviQI GTAC 2 cut(s) 37, 665
DdeI CTNAG 5 cut(s) 309, 716, 778, 1059, 1144
DpnI GATC 6 cut(s) 45, 54, 434, 477, 672, 990
DpnII GATC 6 cut(s) 43, 52, 432, 475, 670, 988
DraI TTTAAA 2 cut(s) 583, 646
DrdI GACNNNNNNGTC 2 cut(s) 927, 949
DseDI GACNNNNNNGTC 2 cut(s) 927, 949
Eam1104I CTCTTC 1 cut(s) 738
EarI CTCTTC 1 cut(s) 738
Eco130I CCWWGG 1 cut(s) 47
Eco147I AGGCCT 1 cut(s) 845
Eco32I GATATC 1 cut(s) 800
Eco47I GGWCC 1 cut(s) 281
Eco57I CTGAAG 2 cut(s) 762, 849
Eco81I CCTNAGG 1 cut(s) 1059
Eco88I CYCGRG 2 cut(s) 56, 862
EcoNI CCTNNNNNAGG 1 cut(s) 24
EcoRII CCWGG 4 cut(s) 39, 80, 141, 168
EcoRV GATATC 1 cut(s) 800
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 8 cut(s) 34, 103, 190, 223, 873, 957, 1162, 1201
FaqI GGGAC 3 cut(s) 118, 186, 589
FatI CATG 8 cut(s) 30, 99, 186, 219, 869, 953, 1158, 1197
FauI CCCGC 1 cut(s) 515
FauNDI CATATG 1 cut(s) 360
Fnu4HI GCNGC 1 cut(s) 296
FokI GGATG 2 cut(s) 733, 1076
Fsp4HI GCNGC 1 cut(s) 296
FspBI CTAG 4 cut(s) 21, 653, 695, 1207
GlaI GCGC 2 cut(s) 1194, 1196
GluI GCNGC 1 cut(s) 296
GsaI CCCAGC 1 cut(s) 119
HaeIII GGCC 1 cut(s) 845
HhaI GCGC 2 cut(s) 1195, 1197
Hin1II CATG 8 cut(s) 34, 103, 190, 223, 873, 957, 1162, 1201
Hin6I GCGC 2 cut(s) 1193, 1195
HinP1I GCGC 2 cut(s) 1193, 1195
HindIII AAGCTT 2 cut(s) 765, 775
HinfI GANTC 3 cut(s) 305, 423, 737
HphI GGTGA 3 cut(s) 131, 158, 487
Hpy188I TCNGA 4 cut(s) 75, 742, 760, 1147
Hpy188III TCNNGA 7 cut(s) 56, 187, 257, 311, 395, 456, 1169
HpyAV CCTTC 4 cut(s) 341, 698, 835, 1175
HpyCH4III ACNGT 3 cut(s) 408, 1112, 1140
HpyCH4IV ACGT 2 cut(s) 131, 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 603, 721
HpyF3I CTNAG 5 cut(s) 309, 716, 778, 1059, 1144
HpySE526I ACGT 2 cut(s) 131, 944
Hsp92II CATG 8 cut(s) 34, 103, 190, 223, 873, 957, 1162, 1201
HspAI GCGC 2 cut(s) 1193, 1195
Kzo9I GATC 6 cut(s) 43, 52, 432, 475, 670, 988
Lsp1109I GCAGC 1 cut(s) 282
LweI GCATC 2 cut(s) 711, 1134
MaeI CTAG 4 cut(s) 21, 653, 695, 1207
MaeII ACGT 2 cut(s) 131, 944
MaeIII GTNAC 3 cut(s) 150, 615, 914
MalI GATC 6 cut(s) 45, 54, 434, 477, 672, 990
MboI GATC 6 cut(s) 43, 52, 432, 475, 670, 988
MboII GAAGA 6 cut(s) 481, 755, 842, 952, 1037, 1080
MflI RGATCY 3 cut(s) 43, 52, 432
MlyI GAGTC 2 cut(s) 432, 731
MnlI CCTC 5 cut(s) 360, 856, 871, 1141, 1153
MseI TTAA 4 cut(s) 534, 582, 645, 909
MspR9I CCNGG 4 cut(s) 41, 82, 143, 170
Mva1269I GAATGC 1 cut(s) 439
MvaI CCWGG 4 cut(s) 41, 82, 143, 170
MvnI CGCG 2 cut(s) 796, 1195
MwoI GCNNNNNNNGC 3 cut(s) 112, 603, 721
NdeI CATATG 1 cut(s) 360
NdeII GATC 6 cut(s) 43, 52, 432, 475, 670, 988
NlaIII CATG 8 cut(s) 34, 103, 190, 223, 873, 957, 1162, 1201
NlaIV GGNNCC 3 cut(s) 45, 54, 853
NmuCI GTSAC 2 cut(s) 615, 914
NspI RCATGY 3 cut(s) 34, 223, 873
PaeI GCATGC 2 cut(s) 34, 873
PaeR7I CTCGAG 1 cut(s) 862
PagI TCATGA 1 cut(s) 186
PauI GCGCGC 1 cut(s) 1193
PceI AGGCCT 1 cut(s) 845
PctI GAATGC 1 cut(s) 439
PfeI GAWTC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 297
PleI GAGTC 2 cut(s) 431, 731
PpsI GAGTC 2 cut(s) 431, 731
PsiI TTATAA 1 cut(s) 450
Psp6I CCWGG 4 cut(s) 39, 80, 141, 168
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 4 cut(s) 39, 80, 141, 168
PspN4I GGNNCC 3 cut(s) 45, 54, 853
PspPI GGNCC 1 cut(s) 281
PspXI VCTCGAGB 1 cut(s) 862
PsuI RGATCY 3 cut(s) 43, 52, 432
PteI GCGCGC 1 cut(s) 1193
RsaI GTAC 2 cut(s) 38, 666
RsaNI GTAC 2 cut(s) 37, 665
SaqAI TTAA 4 cut(s) 534, 582, 645, 909
SatI GCNGC 1 cut(s) 296
Sau3AI GATC 6 cut(s) 43, 52, 432, 475, 670, 988
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 2 cut(s) 432, 731
ScrFI CCNGG 4 cut(s) 41, 82, 143, 170
SfaNI GCATC 2 cut(s) 711, 1134
Sfr274I CTCGAG 1 cut(s) 862
SinI GGWCC 1 cut(s) 281
SlaI CTCGAG 1 cut(s) 862
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
SphI GCATGC 2 cut(s) 34, 873
SseBI AGGCCT 1 cut(s) 845
SsiI CCGC 4 cut(s) 473, 508, 692, 794
SspMI CTAG 4 cut(s) 21, 653, 695, 1207
StuI AGGCCT 1 cut(s) 845
StyD4I CCNGG 4 cut(s) 39, 80, 141, 168
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 3 cut(s) 408, 1112, 1140
TaiI ACGT 2 cut(s) 134, 947
TaqI TCGA 2 cut(s) 421, 863
TfiI GAWTC 1 cut(s) 305
Tru1I TTAA 4 cut(s) 534, 582, 645, 909
Tru9I TTAA 4 cut(s) 534, 582, 645, 909
TscAI CASTG 2 cut(s) 598, 738
TseFI GTSAC 2 cut(s) 615, 914
TseI GCWGC 1 cut(s) 295
Tsp45I GTSAC 2 cut(s) 615, 914
TspDTI ATGAA 6 cut(s) 175, 203, 481, 978, 1017, 1080
TspRI CASTG 2 cut(s) 598, 738
VpaK11BI GGWCC 1 cut(s) 281
XagI CCTNNNNNAGG 1 cut(s) 24
XapI RAATTY 2 cut(s) 239, 1071
XceI RCATGY 3 cut(s) 34, 223, 873
XhoI CTCGAG 1 cut(s) 862
XspI CTAG 4 cut(s) 21, 653, 695, 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.