Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0001389

Physical Location & Seq

Genomic Coordinates Reverse (-)

3153648 .. 3157500

Gene Structure 3853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g03390.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGCAATTGTCACTGCAAGAATTTTTTGACATAAGTAAAGATGATGGAAATGTATTATATGGTCCCTTTGTAAGGCTTCCCAGAGATTCTCAAGAACTCTCTCTTTCCTGCCTCTGTTATATCTCTAATTTGGGTCCACTTTTGCTGAAGTCAATAGCTTACTGTTGCCTATGTCCTGATCTGGAACAATATGTATTATTTCGAATCATAGAGGTCCTGAATTCAGCTTATAAATCTGGGCATATTCAGATTGTTGATCACATTAGTTTCTTGATCACTTTGCTCTCCCGTTTCAGAGTTTTCCCAGAAAATATTGTTCCTGATAGAGAGAATGATGTGAATATCTCAAATCGAGGGACTTTTAAGTCACTCAGCCGAATTGTCTGCTCATGCCTGTCACAGATGGGTGATAATACTCTTGTTTTACAGATGCTAGAGAAAATTGTACTCGATCAGATGTCTCAAAATCCCCCTCTAGACAACGTTTGTGCTATGCTTAGGACGCTTATTACACTGGACTCTAAAACAACGATAATTTCCCAAAGAGCTTTTATAAGCCTAGGCAAAATCCTTCCACGGTATCTGATTGACGTTGTACAGTGCATTGTTGAAGATGACAAGAAGACCACCATTTCCATTTCTTCAACTTCATGTCGTTATTATCTCATCCCTTGCTTTGTCTTGTTTGATAAAAGTCACGAACTTCTGAATCTTGTATTGAATACGTTGGGGTCATGGATAACCGAAAGTAGTTTGCCGCATGTAACTGGTGATCATACCCACTACGCAACTGACATTTCAAGTATGGTAGATGCAGTCGTTTTCCTGCTGCAATTGATGCATATGGATGACAAAATCTGTCAAATCATATCTTTGTTCAAGGCGGAGATTGACTATATCATGGAAGGCATCAGGTTATTACAGTCATCAGAGGAAATCTGCATGACGATTGAAGAAAAGCACAAGGTGCAATGTGCACTTGGTAGACTACAGACTGTAATAATAACACTGCATAGTGAGATGCAGTCCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ipi1_N

Protein Analysis

345

Amino Acids

39.03

Weight (kDa)

5.27

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001389)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04680 AT4G04680 AT5G06350 AT5G06350 AT5G27010
fragaria_vesca	FvH4_6g20280 FvH4_6g20280 FvH4_6g20280 FvH4_6g20280 FvH4_6g20280 FvH4_6g20280 FvH4_6g20280 FvH4_6g20280
malus_domestica	MD10G1053900.v1.1 MD12G1040000.v1.1
prunus_persica	Prupe.7G095000_v2.0.a1 Prupe.7G095000_v2.0.a1 Prupe.7G095000_v2.0.a1 Prupe.7G095000_v2.0.a1 Prupe.7G095000_v2.0.a1
pyrus_communis	pycom01g00990 pycom12g03390 pycom12g03410 pycom14g03330
rosa_chinensis	RchiOBHm_Chr1g0331061 RchiOBHm_Chr1g0331071 RchiOBHm_Chr1g0331091 RchiOBHm_Chr3g0475871
rosa_laevigata	RLG00000023804 RLG00000029754 RLG00000029755 RLG00000029756
rosa_multiflora	Rmu_sc0000539.1_g000093 Rmu_sc0002515.1_g000001
rosa_roxburghii	Rroxscaffold_4G00319460 Rroxscaffold_4G00319470 Rroxscaffold_4G00319490 Rroxscaffold_6G00405770
rosa_rugosa	Rorug01G0093700 Rorug01G0093900 Rorug03G0151800
rosa_samantha	Rh1AG113900 Rh1AG114000 Rh1CG110500 Rh1CG110600 Rh1DG119300 Rh3AG201900 Rh3BG232400 Rh3CG227000 Rh3DG227500
rosa_wichuraiana	Rw1G009270 Rw3G018380 Rw3G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	231, 554
AasI	GACNNNNNNGTC	1 cut(s)	364
AccI	GTMKAC	1 cut(s)	985
AciI	CCGC	2 cut(s)	758, 884
AclI	AACGTT	1 cut(s)	483
AcsI	RAATTY	2 cut(s)	20, 220
AcuI	CTGAAG	1 cut(s)	167
AdeI	CACNNNGTG	1 cut(s)	967
AfaI	GTAC	2 cut(s)	447, 597
AfiI	CCNNNNNNNGG	1 cut(s)	72
AgsI	TTSAA	6 cut(s)	611, 645, 721, 801, 880, 953
AluBI	AGCT	3 cut(s)	158, 227, 548
AluI	AGCT	3 cut(s)	158, 227, 548
Alw21I	GWGCWC	1 cut(s)	979
Alw26I	GTCTC	1 cut(s)	465
Alw44I	GTGCAC	1 cut(s)	975
ApaLI	GTGCAC	1 cut(s)	975
ApeKI	GCWGC	1 cut(s)	829
ApoI	RAATTY	2 cut(s)	20, 220
AspA2I	CCTAGG	1 cut(s)	559
AspS9I	GGNCC	3 cut(s)	62, 134, 214
AsuHPI	GGTGA	2 cut(s)	419, 782
AsuII	TTCGAA	1 cut(s)	202
AvaII	GGWCC	3 cut(s)	62, 134, 214
AvrII	CCTAGG	1 cut(s)	559
BaeGI	GKGCMC	1 cut(s)	979
BbsI	GAAGAC	1 cut(s)	629
Bbv12I	GWGCWC	1 cut(s)	979
BbvI	GCAGC	1 cut(s)	816
BccI	CCATC	2 cut(s)	38, 397
BcgI	CGANNNNNNTGC	2 cut(s)	366, 400
BclI	TGATCA	3 cut(s)	256, 273, 772
BcoDI	GTCTC	1 cut(s)	465
BfaI	CTAG	4 cut(s)	434, 476, 560, 1033
BfmI	CTRYAG	1 cut(s)	989
BisI	GCNGC	2 cut(s)	758, 830
BlnI	CCTAGG	1 cut(s)	559
BlsI	GCNGC	2 cut(s)	759, 831
Bme18I	GGWCC	3 cut(s)	62, 134, 214
BmgT120I	GGNCC	3 cut(s)	62, 134, 214
BmiI	GGNNCC	2 cut(s)	64, 135
BmsI	GCATC	5 cut(s)	420, 802, 828, 918, 1011
BpiI	GAAGAC	1 cut(s)	629
Bpu10I	CCTNAGC	1 cut(s)	497
Bpu14I	TTCGAA	1 cut(s)	202
BpuEI	CTTGAG	1 cut(s)	75
BsaJI	CCNNGG	2 cut(s)	559, 575
Bsc4I	CCNNNNNNNGG	1 cut(s)	72
Bse1I	ACTGG	2 cut(s)	519, 772
Bse3DI	GCAATG	1 cut(s)	977
BseDI	CCNNGG	2 cut(s)	559, 575
BseGI	GGATG	2 cut(s)	666, 853
BseLI	CCNNNNNNNGG	1 cut(s)	72
BseMI	GCAATG	1 cut(s)	977
BseMII	CTCAG	1 cut(s)	385
BseNI	ACTGG	2 cut(s)	519, 772
BseSI	GKGCMC	1 cut(s)	979
BseXI	GCAGC	1 cut(s)	816
BsiHKAI	GWGCWC	1 cut(s)	979
BslFI	GGGAC	2 cut(s)	48, 370
BslI	CCNNNNNNNGG	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	465
BsmFI	GGGAC	2 cut(s)	48, 370
Bsp119I	TTCGAA	1 cut(s)	202
Bsp1286I	GDGCHC	1 cut(s)	979
Bsp1407I	TGTACA	1 cut(s)	595
Bsp143I	GATC	5 cut(s)	178, 256, 273, 451, 772
BspACI	CCGC	2 cut(s)	758, 884
BspCNI	CTCAG	1 cut(s)	384
BspLI	GGNNCC	2 cut(s)	64, 135
BspT104I	TTCGAA	1 cut(s)	202
BsrDI	GCAATG	1 cut(s)	977
BsrGI	TGTACA	1 cut(s)	595
BsrI	ACTGG	2 cut(s)	519, 772
BssECI	CCNNGG	2 cut(s)	559, 575
BssMI	GATC	5 cut(s)	178, 256, 273, 451, 772
BssT1I	CCWWGG	1 cut(s)	559
Bst4CI	ACNGT	5 cut(s)	164, 579, 600, 924, 997
BstAPI	GCANNNNNTGC	2 cut(s)	838, 967
BstAUI	TGTACA	1 cut(s)	595
BstBI	TTCGAA	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	371, 497
BstDSI	CCRYGG	1 cut(s)	575
BstENI	CCTNNNNNAGG	1 cut(s)	70
BstF5I	GGATG	2 cut(s)	666, 853
BstKTI	GATC	5 cut(s)	181, 259, 276, 454, 775
BstMAI	GTCTC	1 cut(s)	465
BstMBI	GATC	5 cut(s)	178, 256, 273, 451, 772
BstMWI	GCNNNNNNNGC	3 cut(s)	502, 838, 967
BstNSI	RCATGY	1 cut(s)	764
BstSFI	CTRYAG	1 cut(s)	989
BstSLI	GKGCMC	1 cut(s)	979
BstV1I	GCAGC	1 cut(s)	816
BstV2I	GAAGAC	1 cut(s)	629
BtgI	CCRYGG	1 cut(s)	575
BtsCI	GGATG	2 cut(s)	666, 853
BtsI	GCAGTG	2 cut(s)	11, 1007
BtsIMutI	CAGTG	4 cut(s)	11, 512, 605, 1007
Cfr13I	GGNCC	3 cut(s)	62, 134, 214
CseI	GACGC	1 cut(s)	511
Csp6I	GTAC	2 cut(s)	446, 596
CviAII	CATG	6 cut(s)	390, 651, 735, 761, 901, 943
CviJI	RGCY	6 cut(s)	76, 158, 227, 375, 548, 558
CviKI_1	RGCY	6 cut(s)	76, 158, 227, 375, 548, 558
CviQI	GTAC	2 cut(s)	446, 596
DdeI	CTNAG	2 cut(s)	371, 497
DpnI	GATC	5 cut(s)	180, 258, 275, 453, 774
DpnII	GATC	5 cut(s)	178, 256, 273, 451, 772
DraIII	CACNNNGTG	1 cut(s)	967
DrdI	GACNNNNNNGTC	1 cut(s)	364
DseDI	GACNNNNNNGTC	1 cut(s)	364
EciI	GGCGGA	1 cut(s)	899
Eco130I	CCWWGG	1 cut(s)	559
Eco47I	GGWCC	3 cut(s)	62, 134, 214
Eco57I	CTGAAG	1 cut(s)	167
EcoNI	CCTNNNNNAGG	1 cut(s)	70
EcoO109I	RGGNCCY	1 cut(s)	214
EcoRI	GAATTC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	559
EcoT22I	ATGCAT	1 cut(s)	843
ErhI	CCWWGG	1 cut(s)	559
FaeI	CATG	6 cut(s)	393, 654, 738, 764, 904, 946
FaqI	GGGAC	2 cut(s)	48, 370
FatI	CATG	6 cut(s)	389, 650, 734, 760, 900, 942
FauNDI	CATATG	1 cut(s)	843
FbaI	TGATCA	3 cut(s)	256, 273, 772
FblI	GTMKAC	1 cut(s)	985
Fnu4HI	GCNGC	2 cut(s)	758, 830
FokI	GGATG	2 cut(s)	653, 860
Fsp4HI	GCNGC	2 cut(s)	758, 830
FspBI	CTAG	4 cut(s)	434, 476, 560, 1033
GluI	GCNGC	2 cut(s)	758, 830
HgaI	GACGC	1 cut(s)	511
Hin1II	CATG	6 cut(s)	393, 654, 738, 764, 904, 946
HinfI	GANTC	4 cut(s)	86, 204, 518, 709
HphI	GGTGA	2 cut(s)	419, 782
Hpy166II	GTNNAC	3 cut(s)	137, 977, 986
Hpy188I	TCNGA	6 cut(s)	249, 296, 456, 585, 708, 931
Hpy188III	TCNNGA	8 cut(s)	92, 176, 182, 217, 271, 320, 476, 698
Hpy8I	GTNNAC	3 cut(s)	137, 977, 986
HpyAV	CCTTC	2 cut(s)	581, 899
HpyCH4III	ACNGT	5 cut(s)	164, 579, 600, 924, 997
HpyCH4IV	ACGT	3 cut(s)	483, 591, 725
HpyF10VI	GCNNNNNNNGC	3 cut(s)	502, 838, 967
HpyF3I	CTNAG	2 cut(s)	371, 497
HpySE526I	ACGT	3 cut(s)	483, 591, 725
Hsp92II	CATG	6 cut(s)	393, 654, 738, 764, 904, 946
Ksp22I	TGATCA	3 cut(s)	256, 273, 772
Kzo9I	GATC	5 cut(s)	178, 256, 273, 451, 772
Lsp1109I	GCAGC	1 cut(s)	816
LweI	GCATC	5 cut(s)	420, 802, 828, 918, 1011
MaeI	CTAG	4 cut(s)	434, 476, 560, 1033
MaeII	ACGT	3 cut(s)	483, 591, 725
MaeIII	GTNAC	5 cut(s)	9, 366, 396, 695, 763
MalI	GATC	5 cut(s)	180, 258, 275, 453, 774
MboI	GATC	5 cut(s)	178, 256, 273, 451, 772
MboII	GAAGA	4 cut(s)	623, 633, 634, 965
MfeI	CAATTG	2 cut(s)	5, 833
MhlI	GDGCHC	1 cut(s)	979
MluCI	AATT	8 cut(s)	5, 20, 127, 220, 378, 441, 534, 833
MlyI	GAGTC	1 cut(s)	512
MnlI	CCTC	5 cut(s)	122, 205, 347, 483, 925
Mph1103I	ATGCAT	1 cut(s)	843
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	846
MunI	CAATTG	2 cut(s)	5, 833
MwoI	GCNNNNNNNGC	3 cut(s)	502, 838, 967
NdeI	CATATG	1 cut(s)	843
NdeII	GATC	5 cut(s)	178, 256, 273, 451, 772
NlaIII	CATG	6 cut(s)	393, 654, 738, 764, 904, 946
NlaIV	GGNNCC	2 cut(s)	64, 135
NmuCI	GTSAC	4 cut(s)	9, 366, 396, 695
NsiI	ATGCAT	1 cut(s)	843
NspI	RCATGY	1 cut(s)	764
NspV	TTCGAA	1 cut(s)	202
PfeI	GAWTC	3 cut(s)	86, 204, 709
PkrI	GCNGC	2 cut(s)	759, 831
PleI	GAGTC	1 cut(s)	512
PpsI	GAGTC	1 cut(s)	512
PpuMI	RGGWCCY	1 cut(s)	214
PsiI	TTATAA	2 cut(s)	231, 554
Psp1406I	AACGTT	1 cut(s)	483
Psp5II	RGGWCCY	1 cut(s)	214
PspN4I	GGNNCC	2 cut(s)	64, 135
PspPI	GGNCC	3 cut(s)	62, 134, 214
PspPPI	RGGWCCY	1 cut(s)	214
RsaI	GTAC	2 cut(s)	447, 597
RsaNI	GTAC	2 cut(s)	446, 596
RseI	CAYNNNNRTG	1 cut(s)	846
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	758, 830
Sau3AI	GATC	5 cut(s)	178, 256, 273, 451, 772
Sau96I	GGNCC	3 cut(s)	62, 134, 214
SchI	GAGTC	1 cut(s)	512
SduI	GDGCHC	1 cut(s)	979
SetI	ASST	9 cut(s)	160, 216, 229, 486, 550, 594, 728, 917, 969
SfaNI	GCATC	5 cut(s)	420, 802, 828, 918, 1011
SfcI	CTRYAG	1 cut(s)	989
SfuI	TTCGAA	1 cut(s)	202
SinI	GGWCC	3 cut(s)	62, 134, 214
SmiMI	CAYNNNNRTG	1 cut(s)	846
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	8 cut(s)	5, 20, 127, 220, 378, 441, 534, 833
SsiI	CCGC	2 cut(s)	758, 884
SspI	AATATT	1 cut(s)	313
SspMI	CTAG	4 cut(s)	434, 476, 560, 1033
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	5 cut(s)	164, 579, 600, 924, 997
TaiI	ACGT	3 cut(s)	486, 594, 728
TaqI	TCGA	3 cut(s)	202, 352, 450
TasI	AATT	8 cut(s)	5, 20, 127, 220, 378, 441, 534, 833
TatI	WGTACW	2 cut(s)	445, 595
TauI	GCSGC	1 cut(s)	760
TfiI	GAWTC	3 cut(s)	86, 204, 709
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	4 cut(s)	18, 519, 605, 1014
TseFI	GTSAC	4 cut(s)	9, 366, 396, 695
TseI	GCWGC	1 cut(s)	829
Tsp45I	GTSAC	4 cut(s)	9, 366, 396, 695
TspDTI	ATGAA	1 cut(s)	639
TspGWI	ACGGA	1 cut(s)	1018
TspRI	CASTG	4 cut(s)	18, 519, 605, 1014
VneI	GTGCAC	1 cut(s)	975
VpaK11BI	GGWCC	3 cut(s)	62, 134, 214
XagI	CCTNNNNNAGG	1 cut(s)	70
XapI	RAATTY	2 cut(s)	20, 220
XbaI	TCTAGA	1 cut(s)	475
XceI	RCATGY	1 cut(s)	764
XmaJI	CCTAGG	1 cut(s)	559
XmiI	GTMKAC	1 cut(s)	985
XspI	CTAG	4 cut(s)	434, 476, 560, 1033
Zsp2I	ATGCAT	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.