pycom01g00990

Testis-expressed sequence 10 protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
974981 .. 982778
7798 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g00990.3

Sequence Viewer

Length: 285 bp
ATGGGTGATAATACTCTTGTTTTGCAGATGCTAAAGAAAATTATACTCGATCAGATGTCTCAAAATCCTCCTCTAGACAACGTTTGTGCTATGCTTAGGATGCTTATTACACTGGACTCTAAAACCACGATAATTTCCCAAAGAGCTTTTATAAGCCTAGGCAATATCCTTCCACGGTATCTGATTGACGTTGTGCAGTGCATTGTTGAAGATGACAAGAAGACCACCGTTTCCATTTCTTCAAGTTCATGTCGTTATTATCTCATCCCTTGCTGTCTTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

95

Amino Acids

10.57

Weight (kDa)

7.58

Isoelectric Point (pI)

44.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 152
AclI AACGTT 1 cut(s) 81
AgsI TTSAA 2 cut(s) 209, 243
AluBI AGCT 1 cut(s) 146
AluI AGCT 1 cut(s) 146
Alw26I GTCTC 1 cut(s) 63
AspA2I CCTAGG 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 17
AvrII CCTAGG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 227
BcoDI GTCTC 1 cut(s) 63
BfaI CTAG 2 cut(s) 74, 158
BlnI CCTAGG 1 cut(s) 157
BmsI GCATC 2 cut(s) 18, 90
BpiI GAAGAC 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 95
BsaJI CCNNGG 2 cut(s) 157, 173
Bse1I ACTGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 157, 173
BseGI GGATG 2 cut(s) 105, 264
BseNI ACTGG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 60
BsgI GTGCAG 1 cut(s) 215
BsmAI GTCTC 1 cut(s) 63
Bsp143I GATC 1 cut(s) 49
BsrI ACTGG 1 cut(s) 117
BssECI CCNNGG 2 cut(s) 157, 173
BssMI GATC 1 cut(s) 49
BssT1I CCWWGG 1 cut(s) 157
Bst4CI ACNGT 2 cut(s) 177, 229
BstDEI CTNAG 1 cut(s) 95
BstDSI CCRYGG 1 cut(s) 173
BstF5I GGATG 2 cut(s) 105, 264
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 1 cut(s) 63
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 173
BtsCI GGATG 2 cut(s) 105, 264
BtsI GCAGTG 1 cut(s) 203
BtsIMutI CAGTG 2 cut(s) 110, 203
CviAII CATG 1 cut(s) 249
CviJI RGCY 2 cut(s) 146, 156
CviKI_1 RGCY 2 cut(s) 146, 156
DdeI CTNAG 1 cut(s) 95
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eco130I CCWWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaeI CATG 1 cut(s) 252
FaiI YATR 4 cut(s) 44, 92, 152, 250
FatI CATG 1 cut(s) 248
FokI GGATG 2 cut(s) 112, 251
FspBI CTAG 2 cut(s) 74, 158
Hin1II CATG 1 cut(s) 252
HinfI GANTC 1 cut(s) 116
HphI GGTGA 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 54, 183
Hpy188III TCNNGA 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 177, 229
HpyCH4IV ACGT 2 cut(s) 81, 189
HpyCH4V TGCA 3 cut(s) 25, 196, 201
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 95
HpySE526I ACGT 2 cut(s) 81, 189
Hsp92II CATG 1 cut(s) 252
Kzo9I GATC 1 cut(s) 49
LpnPI CCDG 1 cut(s) 98
LweI GCATC 2 cut(s) 18, 90
MaeI CTAG 2 cut(s) 74, 158
MaeII ACGT 2 cut(s) 81, 189
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MboII GAAGA 3 cut(s) 221, 231, 232
MluCI AATT 2 cut(s) 39, 132
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 2 cut(s) 78, 81
MwoI GCNNNNNNNGC 1 cut(s) 100
NdeII GATC 1 cut(s) 49
NlaIII CATG 1 cut(s) 252
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
PsiI TTATAA 1 cut(s) 152
Psp1406I AACGTT 1 cut(s) 81
Sau3AI GATC 1 cut(s) 49
SchI GAGTC 1 cut(s) 110
SetI ASST 3 cut(s) 84, 148, 192
SfaNI GCATC 2 cut(s) 18, 90
Sse9I AATT 2 cut(s) 39, 132
SspMI CTAG 2 cut(s) 74, 158
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 2 cut(s) 177, 229
TaiI ACGT 2 cut(s) 84, 192
TaqI TCGA 1 cut(s) 48
TasI AATT 2 cut(s) 39, 132
TscAI CASTG 2 cut(s) 117, 203
TspDTI ATGAA 1 cut(s) 237
TspRI CASTG 2 cut(s) 117, 203
XbaI TCTAGA 1 cut(s) 73
XmaJI CCTAGG 1 cut(s) 157
XspI CTAG 2 cut(s) 74, 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.