AT4G15100

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0003577
Physical Location & Seq
Forward (+)
8625830 .. 8629620
3791 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G15100.1

Sequence Viewer

Length: 1467 bp
ATGGATAATCACACTAAGAGCTTCTCTAGTCTATTAATTTCTTTGTGGTTTACTGCTCTTTTAATATTAGTAGAAATGGTTTCATGTGCGAGACAACATCGTAGAAGTTTCTTGGCCAAGGAGGCAGATCTGGTGACAAATTTGCCCGGACAGCCTGATGTGAGTTTCAAACATTACGCCGGTTATGTTCCTGTCGATAAATCCAACGGAAGAGCTTTGTTTTATTGGTTCTTTGAAGCCATGGATCTCCCCAAAGAGAAACCTCTAGTTCTCTGGCTTAATGGAGGTCCAGGGTGTTCTTCTGTGGGATATGGAGCAACACAAGAGATTGGTCCGTTTCTCGCGGACACCAACGAAAAAGGACTTATATTTAATCCATACGCATGGAATAAAGAGGTTAACATGTTGTTTTTAGAATCTCCCGTCGGCGTTGGTTTTTCGTATTCAAACACAAGTAGCGATTATCTAAATCTTGACGATCACTTTGCAAAAAAAGACGCGTACACGTTTCTTTGCAACTGGTTCGAGAAATTCCCAGAGCACAAAGGAAATGAGTTCTACATTGCAGGCGAAAGTTACGCAGGAATATACGTACCCGAGTTAGCAGAACTTGTGTACGATAACAATGAAAAGAACAATGATTTGTCGCTTCACATCAATCTTAAGGGTTTTTTGTTGGGGAATCCTGATATATCAAATCCAGATGATTGGAGAGGCTGGGTGGATTATGCATGGAGCCATGCAGTGATATCGGACGAGACACATAGAAACATAAACAGGTTGTGCAATTTTAGCAGCGACGATGTTTGGAACAACGACAAGTGCAATGAAGCCATAGCAGAAGTTGACAAGCAGTACAACGAGATCGATATCTATAGCCTCTATACCTCAGCTTGTAAAGGAGATTCTGCAAAATCGTCTTACTTCGCATCAGCACAATTCAAAACAAATTATCACATTAGCTCTAAGAGGATGCCTCCAAGGCGCTTGGCTGGATATGACCCATGCTTAGACGATTACGTGAAAGTATATTACAACAGAGCAGATGTTCAAAAAGCTCTTCATGCAAGTGATGGAGTTAATCTCAAGAACTGGAGCATTTGCAACATGGAGATCTTTCATAATTGGACTTATGTAGTGCAATCGGTTTTGCCTATATACCAGAAACTCATCGCGGGAGGATTAAGGATATGGGTTTACAGCGGTGATACAGACGGATGTATTCCTGTACTCGGAACTCGGTATAGCTTAAATGCACTCGGATTACCCATCAAAACAGCTTGGAGGCCATGGTACCATGAGAAACAGGTAAGTGGATGGGTTCAAGAATACGATGGTCTAACATTTGCTACTTTTAGAGGAGCTGGACATACAGTGCCTAGCTTTAAACCAAGCAGCTCTCTCGCTTTTATCTCTGCGTTTGTCAAAGGTGTTCCTCTGTCGTCATCGAGGGTAGAGACTAATTAA

Protein Analysis

488

Amino Acids

55.26

Weight (kDa)

5.73

Isoelectric Point (pI)

34.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 49 - 477 3.4e-143 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1293
AccB1I GGYRCC 1 cut(s) 1293
AccII CGCG 3 cut(s) 344, 500, 1175
AciI CCGC 3 cut(s) 344, 1175, 1203
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 1 cut(s) 114
AcsI RAATTY 2 cut(s) 139, 530
AfaI GTAC 6 cut(s) 503, 594, 617, 857, 1230, 1295
AfiI CCNNNNNNNGG 1 cut(s) 1232
AflII CTTAAG 1 cut(s) 662
AflIII ACRYGT 3 cut(s) 402, 498, 504
AgsI TTSAA 6 cut(s) 169, 236, 447, 943, 1052, 1325
AjnI CCWGG 1 cut(s) 289
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 3 cut(s) 85, 752, 1451
AlwI GGATC 1 cut(s) 252
Ama87I CYCGRG 1 cut(s) 596
AoxI GGCC 2 cut(s) 114, 1286
ApeKI GCWGC 2 cut(s) 795, 1395
ApoI RAATTY 2 cut(s) 139, 530
ArsI GACNNNNNNTTYG 2 cut(s) 467, 499
AseI ATTAAT 1 cut(s) 35
Asp718I GGTACC 1 cut(s) 1293
AspLEI GCGC 1 cut(s) 987
AspS9I GGNCC 2 cut(s) 287, 332
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 145, 1217
AvaI CYCGRG 1 cut(s) 596
AvaII GGWCC 2 cut(s) 287, 332
BalI TGGCCA 1 cut(s) 116
BanI GGYRCC 1 cut(s) 1293
Bbv12I GWGCWC 1 cut(s) 543
BbvCI CCTCAGC 1 cut(s) 889
BbvI GCAGC 2 cut(s) 807, 1407
BccI CCATC 4 cut(s) 1067, 1277, 1311, 1328
BcgI CGANNNNNNTGC 8 cut(s) 467, 501, 505, 539, 732, 766, 1384, 1418
BciT130I CCWGG 1 cut(s) 291
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 3 cut(s) 85, 752, 1451
BfaI CTAG 3 cut(s) 27, 266, 1380
BfmI CTRYAG 1 cut(s) 874
BfoI RGCGCY 1 cut(s) 988
BfrI CTTAAG 1 cut(s) 662
BglI GCCNNNNNGGC 2 cut(s) 122, 982
BglII AGATCT 2 cut(s) 127, 1113
BisI GCNGC 2 cut(s) 796, 1396
BlsI GCNGC 2 cut(s) 797, 1397
Bme1390I CCNGG 2 cut(s) 147, 291
Bme18I GGWCC 2 cut(s) 287, 332
BmeT110I CYCGRG 1 cut(s) 596
BmgT120I GGNCC 2 cut(s) 287, 332
BmiI GGNNCC 2 cut(s) 737, 1295
BmrFI CCNGG 2 cut(s) 147, 291
BmsI GCATC 2 cut(s) 938, 963
BplI GAGNNNNNCTC 4 cut(s) 961, 993, 1068, 1100
BpmI CTGGAG 1 cut(s) 1114
Bpu10I CCTNAGC 1 cut(s) 889
BpuEI CTTGAG 1 cut(s) 1070
BpuMI CCSGG 1 cut(s) 147
Bsa29I ATCGAT 1 cut(s) 867
BsaAI YACGTR 2 cut(s) 592, 1021
BsaBI GATNNNNATC 1 cut(s) 869
BsaJI CCNNGG 5 cut(s) 117, 240, 290, 980, 1289
Bsc4I CCNNNNNNNGG 1 cut(s) 1232
Bse118I RCCGGY 1 cut(s) 179
Bse1I ACTGG 2 cut(s) 524, 1097
Bse3DI GCAATG 2 cut(s) 561, 832
Bse8I GATNNNNATC 1 cut(s) 869
BseBI CCWGG 1 cut(s) 291
BseCI ATCGAT 1 cut(s) 867
BseDI CCNNGG 5 cut(s) 117, 240, 290, 980, 1289
BseGI GGATG 3 cut(s) 978, 1223, 1322
BseJI GATNNNNATC 1 cut(s) 869
BseLI CCNNNNNNNGG 1 cut(s) 1232
BseMI GCAATG 2 cut(s) 561, 832
BseMII CTCAG 1 cut(s) 903
BseNI ACTGG 2 cut(s) 524, 1097
BseRI GAGGAG 1 cut(s) 1374
BseXI GCAGC 2 cut(s) 807, 1407
BseYI CCCAGC 1 cut(s) 717
Bsh1236I CGCG 3 cut(s) 344, 500, 1175
BshFI GGCC 2 cut(s) 116, 1288
BshNI GGYRCC 1 cut(s) 1293
BshVI ATCGAT 1 cut(s) 867
BsiHKAI GWGCWC 1 cut(s) 543
BsiHKCI CYCGRG 1 cut(s) 596
BsiSI CCGG 2 cut(s) 147, 180
BslI CCNNNNNNNGG 1 cut(s) 1232
BsmAI GTCTC 3 cut(s) 85, 752, 1451
BsnI GGCC 2 cut(s) 116, 1288
BsoBI CYCGRG 1 cut(s) 596
Bsp1286I GDGCHC 1 cut(s) 543
Bsp143I GATC 5 cut(s) 127, 244, 478, 864, 1113
Bsp19I CCATGG 2 cut(s) 240, 1289
BspACI CCGC 3 cut(s) 344, 1175, 1203
BspANI GGCC 2 cut(s) 116, 1288
BspCNI CTCAG 1 cut(s) 902
BspDI ATCGAT 1 cut(s) 867
BspFNI CGCG 3 cut(s) 344, 500, 1175
BspLI GGNNCC 2 cut(s) 737, 1295
BspPI GGATC 1 cut(s) 252
BspQI GCTCTTC 2 cut(s) 205, 1065
BspT107I GGYRCC 1 cut(s) 1293
BspTI CTTAAG 1 cut(s) 662
BsrDI GCAATG 2 cut(s) 561, 832
BsrFI RCCGGY 1 cut(s) 179
BsrI ACTGG 2 cut(s) 524, 1097
BssAI RCCGGY 1 cut(s) 179
BssECI CCNNGG 5 cut(s) 117, 240, 290, 980, 1289
BssMI GATC 5 cut(s) 127, 244, 478, 864, 1113
BssT1I CCWWGG 4 cut(s) 117, 240, 980, 1289
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 1375
Bst6I CTCTTC 2 cut(s) 205, 1065
BstAFI CTTAAG 1 cut(s) 662
BstBAI YACGTR 2 cut(s) 592, 1021
BstC8I GCNNGC 1 cut(s) 568
BstDEI CTNAG 4 cut(s) 15, 889, 966, 1009
BstDSI CCRYGG 2 cut(s) 240, 1289
BstF5I GGATG 3 cut(s) 978, 1223, 1322
BstFNI CGCG 3 cut(s) 344, 500, 1175
BstH2I RGCGCY 1 cut(s) 988
BstHHI GCGC 1 cut(s) 987
BstKTI GATC 5 cut(s) 130, 247, 481, 867, 1116
BstMAI GTCTC 3 cut(s) 85, 752, 1451
BstMBI GATC 5 cut(s) 127, 244, 478, 864, 1113
BstMWI GCNNNNNNNGC 5 cut(s) 122, 151, 792, 982, 1064
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 406
BstSCI CCNGG 2 cut(s) 145, 289
BstSFI CTRYAG 1 cut(s) 874
BstSNI TACGTA 1 cut(s) 592
BstUI CGCG 3 cut(s) 344, 500, 1175
BstV1I GCAGC 2 cut(s) 807, 1407
BstX2I RGATCY 3 cut(s) 127, 244, 1113
BstXI CCANNNNNNTGG 2 cut(s) 384, 708
BstYI RGATCY 3 cut(s) 127, 244, 1113
Bsu15I ATCGAT 1 cut(s) 867
BsuRI GGCC 2 cut(s) 116, 1288
BsuTUI ATCGAT 1 cut(s) 867
BtgI CCRYGG 2 cut(s) 240, 1289
BtgZI GCGATG 1 cut(s) 1156
BtsCI GGATG 3 cut(s) 978, 1223, 1322
BtsI GCAGTG 1 cut(s) 750
BtsIMutI CAGTG 2 cut(s) 750, 1380
Cac8I GCNNGC 1 cut(s) 568
CfoI GCGC 1 cut(s) 987
Cfr10I RCCGGY 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 287, 332
ClaI ATCGAT 1 cut(s) 867
CseI GACGC 1 cut(s) 506
Csp6I GTAC 6 cut(s) 502, 593, 616, 856, 1229, 1294
CviQI GTAC 6 cut(s) 502, 593, 616, 856, 1229, 1294
DdeI CTNAG 4 cut(s) 15, 889, 966, 1009
DpnI GATC 5 cut(s) 129, 246, 480, 866, 1115
DpnII GATC 5 cut(s) 127, 244, 478, 864, 1113
DraI TTTAAA 1 cut(s) 1387
EaeI YGGCCR 1 cut(s) 114
Eam1104I CTCTTC 2 cut(s) 205, 1065
EarI CTCTTC 2 cut(s) 205, 1065
Eco105I TACGTA 1 cut(s) 592
Eco130I CCWWGG 4 cut(s) 117, 240, 980, 1289
Eco32I GATATC 2 cut(s) 750, 871
Eco47I GGWCC 2 cut(s) 287, 332
Eco88I CYCGRG 1 cut(s) 596
EcoRII CCWGG 1 cut(s) 289
EcoRV GATATC 2 cut(s) 750, 871
EcoT14I CCWWGG 4 cut(s) 117, 240, 980, 1289
EcoT22I ATGCAT 1 cut(s) 733
ErhI CCWWGG 4 cut(s) 117, 240, 980, 1289
FauI CCCGC 1 cut(s) 1168
Fnu4HI GCNGC 2 cut(s) 796, 1396
FokI GGATG 3 cut(s) 985, 1230, 1329
Fsp4HI GCNGC 2 cut(s) 796, 1396
FspBI CTAG 3 cut(s) 27, 266, 1380
GlaI GCGC 1 cut(s) 986
GluI GCNGC 2 cut(s) 796, 1396
GsaI CCCAGC 1 cut(s) 721
GsuI CTGGAG 1 cut(s) 1114
HaeII RGCGCY 1 cut(s) 988
HaeIII GGCC 2 cut(s) 116, 1288
HapII CCGG 2 cut(s) 147, 180
HgaI GACGC 1 cut(s) 506
HhaI GCGC 1 cut(s) 987
Hin6I GCGC 1 cut(s) 985
HinP1I GCGC 1 cut(s) 985
HincII GTYRAC 2 cut(s) 400, 847
HindII GTYRAC 2 cut(s) 400, 847
HinfI GANTC 3 cut(s) 416, 682, 905
HpaI GTTAAC 1 cut(s) 400
HpaII CCGG 2 cut(s) 147, 180
HphI GGTGA 2 cut(s) 145, 1217
Hpy166II GTNNAC 6 cut(s) 51, 400, 504, 616, 847, 1198
Hpy188I TCNGA 3 cut(s) 754, 1235, 1262
Hpy188III TCNNGA 6 cut(s) 473, 526, 686, 701, 1087, 1325
Hpy8I GTNNAC 6 cut(s) 51, 400, 504, 616, 847, 1198
Hpy99I CGWCG 2 cut(s) 428, 803
HpyCH4III ACNGT 1 cut(s) 1375
HpyCH4IV ACGT 3 cut(s) 506, 591, 1020
HpyF10VI GCNNNNNNNGC 5 cut(s) 122, 151, 792, 982, 1064
HpyF3I CTNAG 4 cut(s) 15, 889, 966, 1009
HpySE526I ACGT 3 cut(s) 506, 591, 1020
HspAI GCGC 1 cut(s) 985
KpnI GGTACC 1 cut(s) 1297
KspAI GTTAAC 1 cut(s) 400
Kzo9I GATC 5 cut(s) 127, 244, 478, 864, 1113
LguI GCTCTTC 2 cut(s) 205, 1065
LmnI GCTCC 4 cut(s) 314, 735, 1095, 1361
Lsp1109I GCAGC 2 cut(s) 807, 1407
LweI GCATC 2 cut(s) 938, 963
MaeI CTAG 3 cut(s) 27, 266, 1380
MaeII ACGT 3 cut(s) 506, 591, 1020
MaeIII GTNAC 2 cut(s) 133, 575
MalI GATC 5 cut(s) 129, 246, 480, 866, 1115
MboI GATC 5 cut(s) 127, 244, 478, 864, 1113
MboII GAAGA 3 cut(s) 222, 291, 1052
MflI RGATCY 3 cut(s) 127, 244, 1113
MhlI GDGCHC 1 cut(s) 543
MlsI TGGCCA 1 cut(s) 116
MluCI AATT 8 cut(s) 36, 139, 530, 787, 938, 949, 1123, 1462
MluI ACGCGT 1 cut(s) 498
MluNI TGGCCA 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 228
Mox20I TGGCCA 1 cut(s) 116
Mph1103I ATGCAT 1 cut(s) 733
MscI TGGCCA 1 cut(s) 116
MslI CAYNNNNRTG 2 cut(s) 382, 1068
Msp20I TGGCCA 1 cut(s) 116
MspA1I CMGCKG 1 cut(s) 1203
MspCI CTTAAG 1 cut(s) 662
MspI CCGG 2 cut(s) 147, 180
MspR9I CCNGG 2 cut(s) 147, 291
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 3 cut(s) 344, 500, 1175
MwoI GCNNNNNNNGC 5 cut(s) 122, 151, 792, 982, 1064
NciI CCSGG 1 cut(s) 147
NcoI CCATGG 2 cut(s) 240, 1289
NdeII GATC 5 cut(s) 127, 244, 478, 864, 1113
NlaIV GGNNCC 2 cut(s) 737, 1295
NmuCI GTSAC 1 cut(s) 133
NsiI ATGCAT 1 cut(s) 733
NspI RCATGY 1 cut(s) 406
PciI ACATGT 1 cut(s) 402
PciSI GCTCTTC 2 cut(s) 205, 1065
PfeI GAWTC 3 cut(s) 416, 682, 905
PkrI GCNGC 2 cut(s) 797, 1397
Ppu21I YACGTR 2 cut(s) 592, 1021
PscI ACATGT 1 cut(s) 402
PshBI ATTAAT 1 cut(s) 35
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 717
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 737, 1295
PspPI GGNCC 2 cut(s) 287, 332
PsuI RGATCY 3 cut(s) 127, 244, 1113
RsaI GTAC 6 cut(s) 503, 594, 617, 857, 1230, 1295
RsaNI GTAC 6 cut(s) 502, 593, 616, 856, 1229, 1294
RseI CAYNNNNRTG 2 cut(s) 382, 1068
SapI GCTCTTC 2 cut(s) 205, 1065
SatI GCNGC 2 cut(s) 796, 1396
Sau3AI GATC 5 cut(s) 127, 244, 478, 864, 1113
Sau96I GGNCC 2 cut(s) 287, 332
ScrFI CCNGG 2 cut(s) 147, 291
SduI GDGCHC 1 cut(s) 543
SfaNI GCATC 2 cut(s) 938, 963
SfcI CTRYAG 1 cut(s) 874
SinI GGWCC 2 cut(s) 287, 332
SmiMI CAYNNNNRTG 2 cut(s) 382, 1068
SmlI CTYRAG 2 cut(s) 662, 1085
SmoI CTYRAG 2 cut(s) 662, 1085
SnaBI TACGTA 1 cut(s) 592
Sse9I AATT 8 cut(s) 36, 139, 530, 787, 938, 949, 1123, 1462
SsiI CCGC 3 cut(s) 344, 1175, 1203
SspI AATATT 1 cut(s) 66
SspMI CTAG 3 cut(s) 27, 266, 1380
StyD4I CCNGG 2 cut(s) 145, 289
StyI CCWWGG 4 cut(s) 117, 240, 980, 1289
TaaI ACNGT 1 cut(s) 1375
TaiI ACGT 3 cut(s) 509, 594, 1023
TaqI TCGA 4 cut(s) 195, 525, 867, 1448
TasI AATT 8 cut(s) 36, 139, 530, 787, 938, 949, 1123, 1462
TatI WGTACW 2 cut(s) 855, 1228
TfiI GAWTC 3 cut(s) 416, 682, 905
TscAI CASTG 2 cut(s) 750, 1380
TseFI GTSAC 1 cut(s) 133
TseI GCWGC 2 cut(s) 795, 1395
Tsp45I GTSAC 1 cut(s) 133
TspDTI ATGAA 5 cut(s) 72, 642, 843, 1052, 1109
TspGWI ACGGA 3 cut(s) 222, 324, 1230
TspRI CASTG 2 cut(s) 750, 1380
Vha464I CTTAAG 1 cut(s) 662
VpaK11BI GGWCC 2 cut(s) 287, 332
VspI ATTAAT 1 cut(s) 35
XapI RAATTY 2 cut(s) 139, 530
XceI RCATGY 1 cut(s) 406
XspI CTAG 3 cut(s) 27, 266, 1380
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.