RLG00000031466

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003577
Physical Location & Seq
Forward (+)
5434849 .. 5438394
3546 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031466

Sequence Viewer

Length: 1200 bp
ATGAATTTTGTAGTAGTAAAAGCAACAGCTATCTTACTAATTTTGGCTCTTACTGTGGTCGAGCCTAAGCCTGTTCCGGATGCTAGAAAGAAGCGGTCTCATACTGAGAAATTGATCAACTCATTGGCGAGTCAGGATCTTGTGACCAACCTACCTGGCCAGCCTGCTGTAGACTTCCAGCACTATGCTGGCTATGTCACTGTCAATGAAACAAATGGCAGGGCTCTCTTTTACTGGTTTTATGAGGCTGCTACTAACCCAGATCTAAAACCTCTTGTTTTGTGGCTTAATGGAGGTCCTGGGTGTTCTTCTGTGGGATATGGAGCAACCCAAGAGATTGGTCCATTCATAGTGGAAACTGATGGCCATGGACTTAGATTTAATAACTACTCATGGAATAAAGAGGCCAACATGCTGTTCTTGGAATCTCCAGTTGGGGTTGGCTTTTCATACTCCAATACAACTACTGATTATGATAATCTCGGAGATGCCTTTACAGCAAATGATGCATATGCGTTTCTGCATAAGTGGTTTCTTAAGTTCCCATCATACAGAACAAGAACCTTCTACATTGCAGGGGAGAGTTATGCAGGAAAATATGTTCCGGAGCTGGCCGAGCTCATCAATGACAAGAATACAGATCCTTCCCTCCATATTGATCTCAAAGGAGTCCTGCTGGGTAATCCTGAAACCTCAGATGCTGAGGATTGGAGAGGTATAGTGGATTATGCTTGGAGTCATGCTGTGATATCAGACGAAACTCACAAAGTTATACGCGAAAACTGTGATTTTGACGGTGATACTTGGAGTAATAAGATCTGTGCTCATGCTGTGGATGAAGTACTAAAACAATACAAGGAGATAGACATTTACAGCCTTTATACCTCAGTCTGCATCGGTGATACAGCAAGTTCAAATGATGGTTCGATGCAAGTAATGATGATGAAGCACACATCTACAATGATGCCAAGAATTATGGGTGGCTATGATCCGTGTCTGGATGATTATTCAAGAAAATTCTATAACAGAGCAGATGTGCAAAAGGCCCTCCATGTTAGTAATGGTCCCCAGCTCAAGAACTGGAGCATCTGCAGTACCAAAATATTTCATGAGTGGGTTGATTCAAAGCCATCTGTTCTTCCTATATACAAGAAACTCATTGCAGCAGGAATGAGAATATGGGTGTACAGGTACATTTAA

Protein Analysis

400

Amino Acids

44.97

Weight (kDa)

5.67

Isoelectric Point (pI)

26.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 52 - 396 2.8e-112 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 777
AccIII TCCGGA 2 cut(s) 76, 604
AciI CCGC 1 cut(s) 94
AclWI GGATC 3 cut(s) 144, 635, 983
AcoI YGGCCR 3 cut(s) 157, 364, 612
AcsI RAATTY 2 cut(s) 4, 1016
AfaI GTAC 4 cut(s) 843, 1096, 1187, 1193
AflII CTTAAG 1 cut(s) 536
AgsI TTSAA 3 cut(s) 915, 1011, 1125
AjnI CCWGG 2 cut(s) 154, 298
AjuI GAANNNNNNNTTGG 4 cut(s) 401, 417, 433, 449
AloI GAACNNNNNNTCC 2 cut(s) 585, 617
AluBI AGCT 4 cut(s) 29, 610, 619, 1072
AluI AGCT 4 cut(s) 29, 610, 619, 1072
Alw21I GWGCWC 2 cut(s) 621, 826
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 3 cut(s) 144, 635, 983
AlwNI CAGNNNCTG 1 cut(s) 701
Aor13HI TCCGGA 2 cut(s) 76, 604
AoxI GGCC 5 cut(s) 157, 364, 405, 612, 1044
ApeKI GCWGC 2 cut(s) 248, 1163
ApoI RAATTY 2 cut(s) 4, 1016
AspS9I GGNCC 4 cut(s) 296, 341, 1045, 1064
AsuHPI GGTGA 2 cut(s) 809, 911
AvaII GGWCC 3 cut(s) 296, 341, 1064
BalI TGGCCA 2 cut(s) 159, 366
BanII GRGCYC 2 cut(s) 226, 621
Bbv12I GWGCWC 2 cut(s) 621, 826
BbvCI CCTCAGC 1 cut(s) 702
BbvI GCAGC 2 cut(s) 235, 1175
BccI CCATC 4 cut(s) 356, 553, 914, 1138
BciT130I CCWGG 2 cut(s) 156, 300
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 2 cut(s) 168, 1090
BfrI CTTAAG 1 cut(s) 536
BglII AGATCT 2 cut(s) 262, 816
BisI GCNGC 2 cut(s) 249, 1164
BlsI GCNGC 2 cut(s) 250, 1165
BmcAI AGTACT 1 cut(s) 843
Bme1390I CCNGG 2 cut(s) 156, 300
Bme18I GGWCC 3 cut(s) 296, 341, 1064
BmgT120I GGNCC 4 cut(s) 296, 341, 1045, 1064
BmiI GGNNCC 1 cut(s) 1066
BmrFI CCNGG 2 cut(s) 156, 300
BmsI GCATC 8 cut(s) 70, 478, 496, 688, 903, 918, 954, 1095
BpmI CTGGAG 2 cut(s) 414, 1102
Bpu10I CCTNAGC 2 cut(s) 66, 702
BpuEI CTTGAG 1 cut(s) 1058
BsaI GGTCTC 1 cut(s) 102
BsaJI CCNNGG 2 cut(s) 299, 367
BsaWI WCCGGW 2 cut(s) 76, 604
Bse1I ACTGG 3 cut(s) 239, 431, 1085
Bse3DI GCAATG 2 cut(s) 570, 1158
BseAI TCCGGA 2 cut(s) 76, 604
BseBI CCWGG 2 cut(s) 156, 300
BseDI CCNNGG 2 cut(s) 299, 367
BseGI GGATG 3 cut(s) 85, 841, 1006
BseMI GCAATG 2 cut(s) 570, 1158
BseMII CTCAG 4 cut(s) 96, 693, 708, 900
BseNI ACTGG 3 cut(s) 239, 431, 1085
BseXI GCAGC 2 cut(s) 235, 1175
BseYI CCCAGC 2 cut(s) 676, 1068
Bsh1236I CGCG 1 cut(s) 777
BshFI GGCC 5 cut(s) 159, 366, 407, 614, 1046
BsiHKAI GWGCWC 2 cut(s) 621, 826
BsiSI CCGG 2 cut(s) 77, 605
BslFI GGGAC 1 cut(s) 1050
BsmAI GTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 1050
BsnI GGCC 5 cut(s) 159, 366, 407, 614, 1046
Bso31I GGTCTC 1 cut(s) 102
Bsp1286I GDGCHC 3 cut(s) 226, 621, 826
Bsp13I TCCGGA 2 cut(s) 76, 604
Bsp1407I TGTACA 1 cut(s) 1185
Bsp143I GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
Bsp19I CCATGG 1 cut(s) 367
BspACI CCGC 1 cut(s) 94
BspANI GGCC 5 cut(s) 159, 366, 407, 614, 1046
BspCNI CTCAG 4 cut(s) 97, 694, 707, 899
BspEI TCCGGA 2 cut(s) 76, 604
BspFNI CGCG 1 cut(s) 777
BspHI TCATGA 1 cut(s) 1108
BspLI GGNNCC 1 cut(s) 1066
BspMAI CTGCAG 1 cut(s) 1094
BspPI GGATC 3 cut(s) 144, 635, 983
BspTI CTTAAG 1 cut(s) 536
BspTNI GGTCTC 1 cut(s) 102
BsrDI GCAATG 2 cut(s) 570, 1158
BsrGI TGTACA 1 cut(s) 1185
BsrI ACTGG 3 cut(s) 239, 431, 1085
BssECI CCNNGG 2 cut(s) 299, 367
BssMI GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
BssT1I CCWWGG 1 cut(s) 367
Bst2UI CCWGG 2 cut(s) 156, 300
Bst4CI ACNGT 4 cut(s) 55, 202, 785, 797
BstAFI CTTAAG 1 cut(s) 536
BstAPI GCANNNNNTGC 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 1185
BstC8I GCNNGC 4 cut(s) 161, 165, 190, 612
BstDEI CTNAG 6 cut(s) 66, 105, 374, 694, 702, 886
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 3 cut(s) 85, 841, 1006
BstFNI CGCG 1 cut(s) 777
BstKTI GATC 7 cut(s) 117, 139, 265, 643, 661, 819, 991
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
BstMWI GCNNNNNNNGC 3 cut(s) 497, 506, 616
BstNI CCWGG 2 cut(s) 156, 300
BstNSI RCATGY 1 cut(s) 415
BstSCI CCNGG 2 cut(s) 154, 298
BstSFI CTRYAG 2 cut(s) 168, 1090
BstUI CGCG 1 cut(s) 777
BstV1I GCAGC 2 cut(s) 235, 1175
BstX2I RGATCY 4 cut(s) 136, 262, 640, 816
BstXI CCANNNNNNTGG 1 cut(s) 338
BstYI RGATCY 4 cut(s) 136, 262, 640, 816
BsuRI GGCC 5 cut(s) 159, 366, 407, 614, 1046
BtgI CCRYGG 1 cut(s) 367
BtsCI GGATG 3 cut(s) 85, 841, 1006
BtsIMutI CAGTG 1 cut(s) 198
Cac8I GCNNGC 4 cut(s) 161, 165, 190, 612
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 1108
Cfr13I GGNCC 4 cut(s) 296, 341, 1045, 1064
Csp6I GTAC 4 cut(s) 842, 1095, 1186, 1192
CviAII CATG 7 cut(s) 368, 393, 412, 740, 827, 1052, 1109
CviQI GTAC 4 cut(s) 842, 1095, 1186, 1192
DdeI CTNAG 6 cut(s) 66, 105, 374, 694, 702, 886
DpnI GATC 7 cut(s) 116, 138, 264, 642, 660, 818, 990
DpnII GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
EaeI YGGCCR 3 cut(s) 157, 364, 612
Ecl136II GAGCTC 1 cut(s) 619
Eco130I CCWWGG 1 cut(s) 367
Eco24I GRGCYC 2 cut(s) 226, 621
Eco31I GGTCTC 1 cut(s) 102
Eco32I GATATC 1 cut(s) 750
Eco47I GGWCC 3 cut(s) 296, 341, 1064
Eco53kI GAGCTC 1 cut(s) 619
EcoICRI GAGCTC 1 cut(s) 619
EcoO109I RGGNCCY 2 cut(s) 296, 1045
EcoRII CCWGG 2 cut(s) 154, 298
EcoRV GATATC 1 cut(s) 750
EcoT14I CCWWGG 1 cut(s) 367
EcoT22I ATGCAT 1 cut(s) 511
EcoT38I GRGCYC 2 cut(s) 226, 621
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 7 cut(s) 371, 396, 415, 743, 830, 1055, 1112
FaqI GGGAC 1 cut(s) 1050
FatI CATG 7 cut(s) 367, 392, 411, 739, 826, 1051, 1108
FauNDI CATATG 1 cut(s) 511
FbaI TGATCA 1 cut(s) 114
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 249, 1164
FokI GGATG 3 cut(s) 92, 848, 1013
FriOI GRGCYC 2 cut(s) 226, 621
Fsp4HI GCNGC 2 cut(s) 249, 1164
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 249, 1164
GsaI CCCAGC 2 cut(s) 680, 1072
GsuI CTGGAG 2 cut(s) 414, 1102
HaeIII GGCC 5 cut(s) 159, 366, 407, 614, 1046
HapII CCGG 2 cut(s) 77, 605
Hin1II CATG 7 cut(s) 371, 396, 415, 743, 830, 1055, 1112
HinfI GANTC 5 cut(s) 130, 425, 669, 736, 1121
HpaII CCGG 2 cut(s) 77, 605
HphI GGTGA 2 cut(s) 809, 911
Hpy166II GTNNAC 2 cut(s) 172, 1186
Hpy188I TCNGA 3 cut(s) 485, 697, 754
Hpy188III TCNNGA 8 cut(s) 77, 134, 605, 686, 998, 1011, 1075, 1109
Hpy8I GTNNAC 2 cut(s) 172, 1186
HpyAV CCTTC 2 cut(s) 574, 654
HpyCH4III ACNGT 4 cut(s) 55, 202, 785, 797
HpyCH4V TGCA 9 cut(s) 509, 523, 575, 590, 894, 931, 1039, 1092, 1163
HpyF10VI GCNNNNNNNGC 3 cut(s) 497, 506, 616
HpyF3I CTNAG 6 cut(s) 66, 105, 374, 694, 702, 886
Hsp92II CATG 7 cut(s) 371, 396, 415, 743, 830, 1055, 1112
Kpn2I TCCGGA 2 cut(s) 76, 604
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
LmnI GCTCC 3 cut(s) 323, 607, 1083
Lsp1109I GCAGC 2 cut(s) 235, 1175
LweI GCATC 8 cut(s) 70, 478, 496, 688, 903, 918, 954, 1095
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 142, 196
MalI GATC 7 cut(s) 116, 138, 264, 642, 660, 818, 990
MboI GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
MboII GAAGA 2 cut(s) 300, 1130
MflI RGATCY 4 cut(s) 136, 262, 640, 816
MhlI GDGCHC 3 cut(s) 226, 621, 826
MlsI TGGCCA 2 cut(s) 159, 366
MluCI AATT 5 cut(s) 4, 39, 110, 972, 1016
MluNI TGGCCA 2 cut(s) 159, 366
MlyI GAGTC 3 cut(s) 139, 678, 745
Mox20I TGGCCA 2 cut(s) 159, 366
Mph1103I ATGCAT 1 cut(s) 511
MroI TCCGGA 2 cut(s) 76, 604
MscI TGGCCA 2 cut(s) 159, 366
MseI TTAA 4 cut(s) 288, 381, 537, 1198
Msp20I TGGCCA 2 cut(s) 159, 366
MspCI CTTAAG 1 cut(s) 536
MspI CCGG 2 cut(s) 77, 605
MspR9I CCNGG 2 cut(s) 156, 300
MvaI CCWGG 2 cut(s) 156, 300
MvnI CGCG 1 cut(s) 777
MwoI GCNNNNNNNGC 3 cut(s) 497, 506, 616
NcoI CCATGG 1 cut(s) 367
NdeI CATATG 1 cut(s) 511
NdeII GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
NlaIII CATG 7 cut(s) 371, 396, 415, 743, 830, 1055, 1112
NlaIV GGNNCC 1 cut(s) 1066
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 2 cut(s) 142, 196
NsiI ATGCAT 1 cut(s) 511
NspI RCATGY 1 cut(s) 415
PagI TCATGA 1 cut(s) 1108
PfeI GAWTC 2 cut(s) 425, 1121
PkrI GCNGC 2 cut(s) 250, 1165
PleI GAGTC 3 cut(s) 138, 677, 744
PpsI GAGTC 3 cut(s) 138, 677, 744
PpuMI RGGWCCY 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 621
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 154, 298
PspFI CCCAGC 2 cut(s) 676, 1068
PspGI CCWGG 2 cut(s) 154, 298
PspN4I GGNNCC 1 cut(s) 1066
PspPI GGNCC 4 cut(s) 296, 341, 1045, 1064
PspPPI RGGWCCY 1 cut(s) 296
PstI CTGCAG 1 cut(s) 1094
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 4 cut(s) 136, 262, 640, 816
RsaI GTAC 4 cut(s) 843, 1096, 1187, 1193
RsaNI GTAC 4 cut(s) 842, 1095, 1186, 1192
SacI GAGCTC 1 cut(s) 621
SaqAI TTAA 4 cut(s) 288, 381, 537, 1198
SatI GCNGC 2 cut(s) 249, 1164
Sau3AI GATC 7 cut(s) 114, 136, 262, 640, 658, 816, 988
Sau96I GGNCC 4 cut(s) 296, 341, 1045, 1064
ScaI AGTACT 1 cut(s) 843
SchI GAGTC 3 cut(s) 139, 678, 745
ScrFI CCNGG 2 cut(s) 156, 300
SduI GDGCHC 3 cut(s) 226, 621, 826
SfaNI GCATC 8 cut(s) 70, 478, 496, 688, 903, 918, 954, 1095
SfcI CTRYAG 2 cut(s) 168, 1090
SinI GGWCC 3 cut(s) 296, 341, 1064
SmlI CTYRAG 2 cut(s) 536, 1073
SmoI CTYRAG 2 cut(s) 536, 1073
Sse9I AATT 5 cut(s) 4, 39, 110, 972, 1016
SsiI CCGC 1 cut(s) 94
SspI AATATT 1 cut(s) 1104
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 621
StyD4I CCNGG 2 cut(s) 154, 298
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 4 cut(s) 55, 202, 785, 797
TaqI TCGA 2 cut(s) 60, 926
TasI AATT 5 cut(s) 4, 39, 110, 972, 1016
TatI WGTACW 2 cut(s) 841, 1185
TfiI GAWTC 2 cut(s) 425, 1121
Tru1I TTAA 4 cut(s) 288, 381, 537, 1198
Tru9I TTAA 4 cut(s) 288, 381, 537, 1198
TscAI CASTG 1 cut(s) 205
TseFI GTSAC 2 cut(s) 142, 196
TseI GCWGC 2 cut(s) 248, 1163
Tsp45I GTSAC 2 cut(s) 142, 196
TspDTI ATGAA 7 cut(s) 17, 222, 337, 438, 852, 959, 1097
TspGWI ACGGA 1 cut(s) 981
TspRI CASTG 1 cut(s) 205
Vha464I CTTAAG 1 cut(s) 536
VpaK11BI GGWCC 3 cut(s) 296, 341, 1064
XapI RAATTY 2 cut(s) 4, 1016
XceI RCATGY 1 cut(s) 415
XcmI CCANNNNNNNNNTGG 2 cut(s) 185, 1058
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 1 cut(s) 84
ZrmI AGTACT 1 cut(s) 843
Zsp2I ATGCAT 1 cut(s) 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.