Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003577

Physical Location & Seq

Genomic Coordinates Forward (+)

58637412 .. 58638621

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0428400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGAAATCAAAATCTCCCAAGGCTGCTGGCCAAGTCCCTAATGGGCTTCAAGTGCGTTTGCAAGTCATGGTGCTCTCTCACTCGCGGCCCTTCCTTTCTTGCATTCCACCGAGCCTTGTGCTGCAACAGCACCAGCAGGTAGACCTCCATGATCTCCCTTTTGATCCTTTTAAGTGGGATATTTTTCAGAAAAGTTTGTGCGTAAATGGATCCCTGCATTGGTTTCATACCGACACTAGCTCCTATACGTTTCGTATCATTGTGGTTTTTGACCTCATAGAGGAGAGACTAAGAGCCATAGATCTTCCGGAACCTTGTACCTGGGGAGCTGAAATATTTGAATTGGATGGATGTCTAGCTCTAGTAGTTGCCGAGTCGTTTAACATTAGGTCTGAAGATGGCGAGCTGTTAGGGCAGCATGACATGATAGAGCTATGGATTTTGAGGGACTACCAAAGTCAAGTGTGGGTTAAGGAGACTGTCACTATTCCCATTCATTTGAGGGGATCAAGAGACCATGAACATCCTCCATCGTGTACGATCCACCCTACACTCTCATGTCTCCCTTTGTGTACGATCCATTCAGGTGTGCTCATGCTTCAAGTTTCAACAGCAAACCAGTTATCTATTTATGTATATGATATGAAGAGTAAAACTTTTCGGAGAAGTGAAATCATGTTGCCTGGATGGTTGTGTGGGGATGTTCAAGTGGAGTTGCTTACTACTTATGATGATGAAAACATTGTCCCCTTAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

252

Amino Acids

28.81

Weight (kDa)

5.49

Isoelectric Point (pI)

63.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_3	PF08268	63 - 225	9.3e-14	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11080 AT1G11080 AT1G61130 AT4G15100
fragaria_vesca	FvH4_3g04600 FvH4_3g04600 FvH4_3g04600 FvH4_3g04620
malus_domestica	MD05G1322000.v1.1 MD10G1300000.v1.1
prunus_persica	Prupe.4G040800_v2.0.a1 Prupe.4G040800_v2.0.a1
pyrus_communis	pycom05g29630 pycom10g25270
rosa_chinensis	RchiOBHm_Chr5g0007541 RchiOBHm_Chr5g0007551
rosa_laevigata	RLG00000031466 RLG00000031467
rosa_multiflora	Rmu_ssc0000182.1_g000013
rosa_roxburghii	Rroxscaffold_1G00068870 Rroxscaffold_1G00068880
rosa_rugosa	Rorug04G0428200 Rorug04G0428300 Rorug04G0428400 Rorug04G0428500
rosa_samantha	Rh5AG055900 Rh5AG056100 Rh5BG053600 Rh5BG053700 Rh5CG063400 Rh5CG063500 Rh5DG052600 Rh5DG052700
rosa_wichuraiana	Rw5G005400 Rw5G005410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	141
AccII	CGCG	1 cut(s)	85
AccIII	TCCGGA	1 cut(s)	307
AciI	CCGC	1 cut(s)	85
AclWI	GGATC	6 cut(s)	158, 204, 217, 514, 535, 571
AcoI	YGGCCR	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	3 cut(s)	319, 538, 574
AfiI	CCNNNNNNNGG	2 cut(s)	219, 280
AflII	CTTAAG	1 cut(s)	751
AgsI	TTSAA	5 cut(s)	50, 341, 602, 609, 707
AjnI	CCWGG	2 cut(s)	320, 682
AluBI	AGCT	5 cut(s)	240, 329, 359, 406, 433
AluI	AGCT	5 cut(s)	240, 329, 359, 406, 433
Alw21I	GWGCWC	2 cut(s)	75, 594
Alw26I	GTCTC	4 cut(s)	280, 470, 507, 566
AlwI	GGATC	6 cut(s)	158, 204, 217, 514, 535, 571
Aor13HI	TCCGGA	1 cut(s)	307
AoxI	GGCC	2 cut(s)	28, 86
ApeKI	GCWGC	3 cut(s)	23, 121, 415
AspS9I	GGNCC	1 cut(s)	87
BalI	TGGCCA	1 cut(s)	30
BamHI	GGATCC	1 cut(s)	209
Bbv12I	GWGCWC	2 cut(s)	75, 594
BbvI	GCAGC	3 cut(s)	10, 108, 427
BccI	CCATC	4 cut(s)	341, 392, 538, 681
BcgI	CGANNNNNNTGC	2 cut(s)	100, 134
BciT130I	CCWGG	2 cut(s)	322, 684
BcoDI	GTCTC	4 cut(s)	280, 470, 507, 566
BfaI	CTAG	3 cut(s)	237, 356, 362
BfrI	CTTAAG	1 cut(s)	751
BfuAI	ACCTGC	1 cut(s)	127
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	4 cut(s)	24, 86, 122, 416
BlsI	GCNGC	4 cut(s)	25, 87, 123, 417
Bme1390I	CCNGG	2 cut(s)	322, 684
BmgT120I	GGNCC	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	211, 312
BmrFI	CCNGG	2 cut(s)	322, 684
BsaI	GGTCTC	1 cut(s)	507
BsaJI	CCNNGG	2 cut(s)	18, 321
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	2 cut(s)	224, 254
Bsc4I	CCNNNNNNNGG	2 cut(s)	219, 280
Bse1I	ACTGG	1 cut(s)	619
BseAI	TCCGGA	1 cut(s)	307
BseBI	CCWGG	2 cut(s)	322, 684
BseDI	CCNNGG	2 cut(s)	18, 321
BseGI	GGATG	5 cut(s)	352, 356, 523, 692, 706
BseLI	CCNNNNNNNGG	2 cut(s)	219, 280
BseNI	ACTGG	1 cut(s)	619
BseRI	GAGGAG	1 cut(s)	296
BseXI	GCAGC	3 cut(s)	10, 108, 427
Bsh1236I	CGCG	1 cut(s)	85
BshFI	GGCC	2 cut(s)	30, 88
BsiHKAI	GWGCWC	2 cut(s)	75, 594
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	3 cut(s)	20, 461, 731
BslI	CCNNNNNNNGG	2 cut(s)	219, 280
BsmAI	GTCTC	4 cut(s)	280, 470, 507, 566
BsmFI	GGGAC	3 cut(s)	20, 461, 731
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	2 cut(s)	30, 88
Bso31I	GGTCTC	1 cut(s)	507
Bsp1286I	GDGCHC	2 cut(s)	75, 594
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	7 cut(s)	151, 163, 209, 301, 506, 540, 576
BspACI	CCGC	1 cut(s)	85
BspANI	GGCC	2 cut(s)	30, 88
BspEI	TCCGGA	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	85
BspLI	GGNNCC	2 cut(s)	211, 312
BspMI	ACCTGC	1 cut(s)	127
BspPI	GGATC	6 cut(s)	158, 204, 217, 514, 535, 571
BspTI	CTTAAG	1 cut(s)	751
BspTNI	GGTCTC	1 cut(s)	507
BsrI	ACTGG	1 cut(s)	619
BssECI	CCNNGG	2 cut(s)	18, 321
BssMI	GATC	7 cut(s)	151, 163, 209, 301, 506, 540, 576
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	322, 684
Bst4CI	ACNGT	1 cut(s)	481
Bst6I	CTCTTC	1 cut(s)	641
BstAFI	CTTAAG	1 cut(s)	751
BstC8I	GCNNGC	2 cut(s)	28, 404
BstDEI	CTNAG	1 cut(s)	290
BstENI	CCTNNNNNAGG	1 cut(s)	278
BstF5I	GGATG	5 cut(s)	352, 356, 523, 692, 706
BstFNI	CGCG	1 cut(s)	85
BstKTI	GATC	7 cut(s)	154, 166, 212, 304, 509, 543, 579
BstMAI	GTCTC	4 cut(s)	280, 470, 507, 566
BstMBI	GATC	7 cut(s)	151, 163, 209, 301, 506, 540, 576
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 127, 412
BstNI	CCWGG	2 cut(s)	322, 684
BstSCI	CCNGG	2 cut(s)	320, 682
BstUI	CGCG	1 cut(s)	85
BstV1I	GCAGC	3 cut(s)	10, 108, 427
BstX2I	RGATCY	2 cut(s)	209, 301
BstYI	RGATCY	2 cut(s)	209, 301
BsuRI	GGCC	2 cut(s)	30, 88
BtsCI	GGATG	5 cut(s)	352, 356, 523, 692, 706
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	2 cut(s)	28, 404
Cfr13I	GGNCC	1 cut(s)	87
Csp6I	GTAC	3 cut(s)	318, 537, 573
CviAII	CATG	8 cut(s)	67, 149, 419, 424, 518, 558, 595, 676
CviQI	GTAC	3 cut(s)	318, 537, 573
DdeI	CTNAG	1 cut(s)	290
DpnI	GATC	7 cut(s)	153, 165, 211, 303, 508, 542, 578
DpnII	GATC	7 cut(s)	151, 163, 209, 301, 506, 540, 576
EaeI	YGGCCR	1 cut(s)	28
Eam1104I	CTCTTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	641
Eco130I	CCWWGG	1 cut(s)	18
Eco31I	GGTCTC	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	414
EcoNI	CCTNNNNNAGG	1 cut(s)	278
EcoRII	CCWGG	2 cut(s)	320, 682
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	8 cut(s)	70, 152, 422, 427, 521, 561, 598, 679
FaqI	GGGAC	3 cut(s)	20, 461, 731
FatI	CATG	8 cut(s)	66, 148, 418, 423, 517, 557, 594, 675
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	4 cut(s)	24, 86, 122, 416
FokI	GGATG	5 cut(s)	359, 363, 510, 699, 713
Fsp4HI	GCNGC	4 cut(s)	24, 86, 122, 416
FspBI	CTAG	3 cut(s)	237, 356, 362
GluI	GCNGC	4 cut(s)	24, 86, 122, 416
HaeIII	GGCC	2 cut(s)	30, 88
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	8 cut(s)	70, 152, 422, 427, 521, 561, 598, 679
HinfI	GANTC	1 cut(s)	374
HpaII	CCGG	1 cut(s)	308
Hpy166II	GTNNAC	3 cut(s)	142, 537, 573
Hpy188I	TCNGA	3 cut(s)	189, 394, 663
Hpy188III	TCNNGA	2 cut(s)	308, 510
Hpy8I	GTNNAC	3 cut(s)	142, 537, 573
HpyAV	CCTTC	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	481
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	4 cut(s)	61, 102, 124, 217
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 127, 412
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	248
Hsp92II	CATG	8 cut(s)	70, 152, 422, 427, 521, 561, 598, 679
Kpn2I	TCCGGA	1 cut(s)	307
Kzo9I	GATC	7 cut(s)	151, 163, 209, 301, 506, 540, 576
LmnI	GCTCC	2 cut(s)	245, 326
Lsp1109I	GCAGC	3 cut(s)	10, 108, 427
MaeI	CTAG	3 cut(s)	237, 356, 362
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	7 cut(s)	153, 165, 211, 303, 508, 542, 578
MboI	GATC	7 cut(s)	151, 163, 209, 301, 506, 540, 576
MboII	GAAGA	3 cut(s)	296, 407, 658
MflI	RGATCY	2 cut(s)	209, 301
MhlI	GDGCHC	2 cut(s)	75, 594
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	1 cut(s)	341
MluNI	TGGCCA	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	383
MnlI	CCTC	6 cut(s)	155, 274, 284, 438, 495, 537
Mox20I	TGGCCA	1 cut(s)	30
MroI	TCCGGA	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	4 cut(s)	171, 381, 471, 752
MslI	CAYNNNNRTG	2 cut(s)	556, 585
Msp20I	TGGCCA	1 cut(s)	30
MspCI	CTTAAG	1 cut(s)	751
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	322, 684
Mva1269I	GAATGC	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	322, 684
MvnI	CGCG	1 cut(s)	85
MwoI	GCNNNNNNNGC	3 cut(s)	52, 127, 412
NdeII	GATC	7 cut(s)	151, 163, 209, 301, 506, 540, 576
NlaIII	CATG	8 cut(s)	70, 152, 422, 427, 521, 561, 598, 679
NlaIV	GGNNCC	2 cut(s)	211, 312
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	481
PctI	GAATGC	1 cut(s)	102
PkrI	GCNGC	4 cut(s)	25, 87, 123, 417
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
Psp6I	CCWGG	2 cut(s)	320, 682
PspGI	CCWGG	2 cut(s)	320, 682
PspN4I	GGNNCC	2 cut(s)	211, 312
PspPI	GGNCC	1 cut(s)	87
PsuI	RGATCY	2 cut(s)	209, 301
RsaI	GTAC	3 cut(s)	319, 538, 574
RsaNI	GTAC	3 cut(s)	318, 537, 573
RseI	CAYNNNNRTG	2 cut(s)	556, 585
SaqAI	TTAA	4 cut(s)	171, 381, 471, 752
SatI	GCNGC	4 cut(s)	24, 86, 122, 416
Sau3AI	GATC	7 cut(s)	151, 163, 209, 301, 506, 540, 576
Sau96I	GGNCC	1 cut(s)	87
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	322, 684
SduI	GDGCHC	2 cut(s)	75, 594
SmiMI	CAYNNNNRTG	2 cut(s)	556, 585
SmlI	CTYRAG	1 cut(s)	751
SmoI	CTYRAG	1 cut(s)	751
Sse9I	AATT	1 cut(s)	341
SsiI	CCGC	1 cut(s)	85
SspI	AATATT	1 cut(s)	336
SspMI	CTAG	3 cut(s)	237, 356, 362
StyD4I	CCNGG	2 cut(s)	320, 682
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	481
TaiI	ACGT	1 cut(s)	251
TasI	AATT	1 cut(s)	341
TauI	GCSGC	1 cut(s)	88
Tru1I	TTAA	4 cut(s)	171, 381, 471, 752
Tru9I	TTAA	4 cut(s)	171, 381, 471, 752
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	3 cut(s)	23, 121, 415
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	6 cut(s)	17, 215, 485, 534, 659, 750
Vha464I	CTTAAG	1 cut(s)	751
XagI	CCTNNNNNAGG	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	141
XspI	CTAG	3 cut(s)	237, 356, 362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.