Rroxscaffold_1G00068870

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
89936453 .. 89939174
2722 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00068870.1

Sequence Viewer

Length: 1173 bp
ATGGAGTTCGTAATAAAAGCGACAGCCTTCTTCTTCTTCATTCTGGCAACTATTGTGGAGCCTCAGCCTGTTTTGGGATCTAGAAGAACATTGCAACAACAGACTGGGATTAGTCCTAGTAGTGATGAGGATCTTGTGACCAACTTGCCTGGCCAGCCTGCCGTAGACTTCAAGCACTATGCCGGCTATGTCACTGTGAACAAAACAAACGGACGGGCACTCTTTTACTGGTTCTTTGAGGCTGCTACCACTCCAGATCAAAAACCTCTTGTTTTGTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCCAGCCAAGAGATTGGTCCATTCCTATTGGACATTAAGAGCCAGGGACTCATATTTAATAACTACTCATGGAATAAAGGCGAGAGTTATGCAGGAAAATATATTCCGGAGCTAGCTGAGTTCATCTTTGATAGGAACTCAGATCCTTCCCTCCATATTGATCTCAAGGGTATCCTAATGGGTAATCCTGAAACAGATGATGCTGAGGATTGGAGGGGTCTGGTGGATTATGCTTGGAGTCATGCTGTGGTTTCGGACGAAACTCACAAATTAATAAGCGAGTACTGTGATTTCCACAGTAATGATACTTGGGAAAATAAAAATTGTACACAAGGTGTGGATGAAGTATTTAAACAGTACAAGGAGATAGATATATACAGCCTTTACACCCTGACCTGCACTACAAATGATACAGCAACTTCGAATACTGCTGATTCGAAAGTTCAAGTCATGACGATGAAGAACACATCTACAATGAACATTTTCTTCATCTACTTCGTTTGCAGTAATCAAATATTTACCAATTGGTCAGATTCAAAGCCATCTCTTCTTCCCATATACAAGAAACTCATTGCGGCAGGACTAAGAATATGGTTGTACAGTGGAGACACGGATGGAAGAGTACCTGTGCTGTCCACAAGATATAGCTTAGGTGCTCTAGGGCTGCCTATTACAAAGACATGGAGACCTTGGTACCATCAGAAGCAGGTGACTGGTTGGTATCAAGAATATGAGGGGCTTACATATGCAACACTTAGAGGAGCTGGGCATGATGTTCCCTCCTTCAAACCAGCAGAGTCATTGGTTCTATTCACATCTTTTCTCCTTGGGGAATCTCCTCCTTCGACTCGATGA

Protein Analysis

390

Amino Acids

43.9

Weight (kDa)

5.15

Isoelectric Point (pI)

35.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 50 - 132 4e-32 Serine carboxypeptidase
Peptidase_S10 PF00450 133 - 382 1.1e-54 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1015
Acc36I ACCTGC 2 cut(s) 722, 1015
Acc65I GGTACC 1 cut(s) 1011
AccB1I GGYRCC 1 cut(s) 1011
AccI GTMKAC 1 cut(s) 165
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 1 cut(s) 893
AclWI GGATC 3 cut(s) 85, 138, 455
AcoI YGGCCR 1 cut(s) 151
AdeI CACNNNGTG 1 cut(s) 653
AfaI GTAC 6 cut(s) 602, 646, 677, 917, 942, 1013
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 4 cut(s) 172, 764, 855, 1105
AjnI CCWGG 3 cut(s) 148, 292, 360
AluBI AGCT 4 cut(s) 430, 434, 966, 1082
AluI AGCT 4 cut(s) 430, 434, 966, 1082
Alw21I GWGCWC 2 cut(s) 302, 976
Alw26I GTCTC 2 cut(s) 918, 997
AlwI GGATC 3 cut(s) 85, 138, 455
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 242, 982
AseI ATTAAT 1 cut(s) 590
Asp700I GAANNNNTTC 1 cut(s) 800
Asp718I GGTACC 1 cut(s) 1011
AspS9I GGNCC 2 cut(s) 290, 335
AsuHPI GGTGA 1 cut(s) 1039
AsuII TTCGAA 2 cut(s) 740, 755
AsuNHI GCTAGC 1 cut(s) 430
AvaII GGWCC 2 cut(s) 290, 335
BaeGI GKGCMC 1 cut(s) 220
BaeI ACNNNNGTAYC 2 cut(s) 995, 1028
BalI TGGCCA 1 cut(s) 153
BanI GGYRCC 1 cut(s) 1011
Bbv12I GWGCWC 2 cut(s) 302, 976
BbvCI CCTCAGC 2 cut(s) 63, 522
BbvI GCAGC 2 cut(s) 229, 969
BccI CCATC 3 cut(s) 868, 926, 1023
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 389, 423
BciT130I CCWGG 3 cut(s) 150, 294, 362
BciVI GTATCC 1 cut(s) 500
BcoDI GTCTC 2 cut(s) 918, 997
BfaI CTAG 4 cut(s) 81, 117, 431, 977
BfuAI ACCTGC 2 cut(s) 722, 1015
BfuI GTATCC 1 cut(s) 500
BisI GCNGC 3 cut(s) 243, 894, 983
BlsI GCNGC 3 cut(s) 244, 895, 984
BmcAI AGTACT 1 cut(s) 602
Bme1390I CCNGG 3 cut(s) 150, 294, 362
Bme18I GGWCC 2 cut(s) 290, 335
BmgT120I GGNCC 2 cut(s) 290, 335
BmiI GGNNCC 3 cut(s) 60, 319, 1013
BmrFI CCNGG 3 cut(s) 150, 294, 362
BmrI ACTGGG 1 cut(s) 114
BmsI GCATC 1 cut(s) 508
BmtI GCTAGC 1 cut(s) 434
BmuI ACTGGG 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 237
Bpu10I CCTNAGC 3 cut(s) 63, 522, 967
Bpu14I TTCGAA 2 cut(s) 740, 755
BpuEI CTTGAG 1 cut(s) 467
BsaBI GATNNNNATC 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 997
BsaJI CCNNGG 4 cut(s) 293, 361, 1007, 1144
BsaWI WCCGGW 1 cut(s) 424
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse118I RCCGGY 1 cut(s) 182
Bse1I ACTGG 3 cut(s) 109, 233, 1036
Bse3DI GCAATG 2 cut(s) 89, 888
Bse8I GATNNNNATC 1 cut(s) 129
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 3 cut(s) 150, 294, 362
BseDI CCNNGG 4 cut(s) 293, 361, 1007, 1144
BseGI GGATG 2 cut(s) 664, 937
BseJI GATNNNNATC 1 cut(s) 129
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 2 cut(s) 89, 888
BseMII CTCAG 4 cut(s) 77, 426, 471, 513
BseNI ACTGG 3 cut(s) 109, 233, 1036
BseRI GAGGAG 2 cut(s) 1092, 1146
BseSI GKGCMC 1 cut(s) 220
BseXI GCAGC 2 cut(s) 229, 969
BseYI CCCAGC 1 cut(s) 1082
BsgI GTGCAG 1 cut(s) 700
BshFI GGCC 1 cut(s) 153
BshNI GGYRCC 1 cut(s) 1011
BsiHKAI GWGCWC 2 cut(s) 302, 976
BsiSI CCGG 2 cut(s) 183, 425
BslFI GGGAC 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 2 cut(s) 918, 997
BsmFI GGGAC 1 cut(s) 378
BsnI GGCC 1 cut(s) 153
Bso31I GGTCTC 1 cut(s) 997
Bsp119I TTCGAA 2 cut(s) 740, 755
Bsp1286I GDGCHC 3 cut(s) 220, 302, 976
Bsp13I TCCGGA 1 cut(s) 424
Bsp1407I TGTACA 2 cut(s) 644, 915
Bsp143I GATC 5 cut(s) 77, 130, 256, 460, 478
BspACI CCGC 1 cut(s) 893
BspANI GGCC 1 cut(s) 153
BspCNI CTCAG 4 cut(s) 76, 427, 470, 514
BspEI TCCGGA 1 cut(s) 424
BspHI TCATGA 1 cut(s) 768
BspLI GGNNCC 3 cut(s) 60, 319, 1013
BspMI ACCTGC 2 cut(s) 722, 1015
BspOI GCTAGC 1 cut(s) 434
BspPI GGATC 3 cut(s) 85, 138, 455
BspQI GCTCTTC 1 cut(s) 307
BspT104I TTCGAA 2 cut(s) 740, 755
BspT107I GGYRCC 1 cut(s) 1011
BspTNI GGTCTC 1 cut(s) 997
BsrDI GCAATG 2 cut(s) 89, 888
BsrFI RCCGGY 1 cut(s) 182
BsrGI TGTACA 2 cut(s) 644, 915
BsrI ACTGG 3 cut(s) 109, 233, 1036
BssAI RCCGGY 1 cut(s) 182
BssECI CCNNGG 4 cut(s) 293, 361, 1007, 1144
BssMI GATC 5 cut(s) 77, 130, 256, 460, 478
BssT1I CCWWGG 2 cut(s) 1007, 1144
Bst2UI CCWGG 3 cut(s) 150, 294, 362
Bst4CI ACNGT 5 cut(s) 196, 605, 617, 675, 920
Bst6I CTCTTC 3 cut(s) 307, 870, 931
BstAUI TGTACA 2 cut(s) 644, 915
BstBI TTCGAA 2 cut(s) 740, 755
BstC8I GCNNGC 5 cut(s) 155, 159, 184, 322, 432
BstDEI CTNAG 7 cut(s) 63, 435, 457, 522, 902, 967, 1073
BstF5I GGATG 2 cut(s) 664, 937
BstKTI GATC 5 cut(s) 80, 133, 259, 463, 481
BstMAI GTCTC 2 cut(s) 918, 997
BstMBI GATC 5 cut(s) 77, 130, 256, 460, 478
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstNI CCWGG 3 cut(s) 150, 294, 362
BstSCI CCNGG 3 cut(s) 148, 292, 360
BstSLI GKGCMC 1 cut(s) 220
BstV1I GCAGC 2 cut(s) 229, 969
BstX2I RGATCY 3 cut(s) 77, 130, 460
BstXI CCANNNNNNTGG 1 cut(s) 332
BstYI RGATCY 3 cut(s) 77, 130, 460
BsuI GTATCC 1 cut(s) 500
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 2 cut(s) 664, 937
BtsIMutI CAGTG 2 cut(s) 192, 925
BveI ACCTGC 2 cut(s) 722, 1015
Cac8I GCNNGC 5 cut(s) 155, 159, 184, 322, 432
CciI TCATGA 1 cut(s) 768
Cfr10I RCCGGY 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 290, 335
Csp6I GTAC 6 cut(s) 601, 645, 676, 916, 941, 1012
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 5 cut(s) 387, 560, 769, 999, 1088
CviQI GTAC 6 cut(s) 601, 645, 676, 916, 941, 1012
DdeI CTNAG 7 cut(s) 63, 435, 457, 522, 902, 967, 1073
DpnI GATC 5 cut(s) 79, 132, 258, 462, 480
DpnII GATC 5 cut(s) 77, 130, 256, 460, 478
DraI TTTAAA 1 cut(s) 670
DraIII CACNNNGTG 1 cut(s) 653
EaeI YGGCCR 1 cut(s) 151
Eam1104I CTCTTC 3 cut(s) 307, 870, 931
EarI CTCTTC 3 cut(s) 307, 870, 931
Eco130I CCWWGG 2 cut(s) 1007, 1144
Eco31I GGTCTC 1 cut(s) 997
Eco47I GGWCC 2 cut(s) 290, 335
EcoO109I RGGNCCY 1 cut(s) 290
EcoRII CCWGG 3 cut(s) 148, 292, 360
EcoT14I CCWWGG 2 cut(s) 1007, 1144
ErhI CCWWGG 2 cut(s) 1007, 1144
FaeI CATG 5 cut(s) 390, 563, 772, 1002, 1091
FaqI GGGAC 1 cut(s) 378
FatI CATG 5 cut(s) 386, 559, 768, 998, 1087
FauNDI CATATG 1 cut(s) 1063
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 3 cut(s) 243, 894, 983
FokI GGATG 2 cut(s) 671, 944
Fsp4HI GCNGC 3 cut(s) 243, 894, 983
FspBI CTAG 4 cut(s) 81, 117, 431, 977
GluI GCNGC 3 cut(s) 243, 894, 983
GsaI CCCAGC 1 cut(s) 1086
GsuI CTGGAG 1 cut(s) 237
HaeIII GGCC 1 cut(s) 153
HapII CCGG 2 cut(s) 183, 425
Hin1II CATG 5 cut(s) 390, 563, 772, 1002, 1091
HinfI GANTC 7 cut(s) 366, 556, 752, 851, 1115, 1151, 1165
HpaII CCGG 2 cut(s) 183, 425
HphI GGTGA 1 cut(s) 1039
Hpy166II GTNNAC 4 cut(s) 166, 199, 647, 954
Hpy188I TCNGA 4 cut(s) 460, 574, 850, 1020
Hpy188III TCNNGA 6 cut(s) 81, 254, 425, 506, 769, 1043
Hpy8I GTNNAC 4 cut(s) 166, 199, 647, 954
HpyAV CCTTC 4 cut(s) 37, 474, 1111, 1170
HpyCH4III ACNGT 5 cut(s) 196, 605, 617, 675, 920
HpyCH4V TGCA 5 cut(s) 94, 410, 717, 822, 1067
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 7 cut(s) 63, 435, 457, 522, 902, 967, 1073
Hsp92II CATG 5 cut(s) 390, 563, 772, 1002, 1091
Kpn2I TCCGGA 1 cut(s) 424
KpnI GGTACC 1 cut(s) 1015
KroI GCCGGC 1 cut(s) 182
KroNI GCCGGC 1 cut(s) 184
Kzo9I GATC 5 cut(s) 77, 130, 256, 460, 478
LguI GCTCTTC 1 cut(s) 307
LmnI GCTCC 4 cut(s) 58, 317, 427, 1079
Lsp1109I GCAGC 2 cut(s) 229, 969
LweI GCATC 1 cut(s) 508
MaeI CTAG 4 cut(s) 81, 117, 431, 977
MaeIII GTNAC 3 cut(s) 136, 190, 1027
MalI GATC 5 cut(s) 79, 132, 258, 462, 480
MboI GATC 5 cut(s) 77, 130, 256, 460, 478
MfeI CAATTG 1 cut(s) 841
MflI RGATCY 3 cut(s) 77, 130, 460
MhlI GDGCHC 3 cut(s) 220, 302, 976
MlsI TGGCCA 1 cut(s) 153
MluCI AATT 3 cut(s) 587, 640, 841
MluNI TGGCCA 1 cut(s) 153
MlyI GAGTC 4 cut(s) 360, 565, 1124, 1159
Mox20I TGGCCA 1 cut(s) 153
MroI TCCGGA 1 cut(s) 424
MroNI GCCGGC 1 cut(s) 182
MroXI GAANNNNTTC 1 cut(s) 800
MscI TGGCCA 1 cut(s) 153
MseI TTAA 5 cut(s) 282, 354, 375, 590, 669
MslI CAYNNNNRTG 2 cut(s) 618, 773
Msp20I TGGCCA 1 cut(s) 153
MspI CCGG 2 cut(s) 183, 425
MspR9I CCNGG 3 cut(s) 150, 294, 362
MunI CAATTG 1 cut(s) 841
MvaI CCWGG 3 cut(s) 150, 294, 362
MwoI GCNNNNNNNGC 1 cut(s) 154
NaeI GCCGGC 1 cut(s) 184
NdeI CATATG 1 cut(s) 1063
NdeII GATC 5 cut(s) 77, 130, 256, 460, 478
NgoMIV GCCGGC 1 cut(s) 182
NheI GCTAGC 1 cut(s) 430
NlaIII CATG 5 cut(s) 390, 563, 772, 1002, 1091
NlaIV GGNNCC 3 cut(s) 60, 319, 1013
NmuCI GTSAC 3 cut(s) 136, 190, 1027
NspV TTCGAA 2 cut(s) 740, 755
PagI TCATGA 1 cut(s) 768
PaqCI CACCTGC 1 cut(s) 1015
PciSI GCTCTTC 1 cut(s) 307
PdiI GCCGGC 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 800
PfeI GAWTC 3 cut(s) 752, 851, 1151
PkrI GCNGC 3 cut(s) 244, 895, 984
PleI GAGTC 4 cut(s) 360, 564, 1123, 1159
PpsI GAGTC 4 cut(s) 360, 564, 1123, 1159
PpuMI RGGWCCY 1 cut(s) 290
PshBI ATTAAT 1 cut(s) 590
Psp5II RGGWCCY 1 cut(s) 290
Psp6I CCWGG 3 cut(s) 148, 292, 360
PspFI CCCAGC 1 cut(s) 1082
PspGI CCWGG 3 cut(s) 148, 292, 360
PspN4I GGNNCC 3 cut(s) 60, 319, 1013
PspPI GGNCC 2 cut(s) 290, 335
PspPPI RGGWCCY 1 cut(s) 290
PsuI RGATCY 3 cut(s) 77, 130, 460
RsaI GTAC 6 cut(s) 602, 646, 677, 917, 942, 1013
RsaNI GTAC 6 cut(s) 601, 645, 676, 916, 941, 1012
RseI CAYNNNNRTG 2 cut(s) 618, 773
SapI GCTCTTC 1 cut(s) 307
SaqAI TTAA 5 cut(s) 282, 354, 375, 590, 669
SatI GCNGC 3 cut(s) 243, 894, 983
Sau3AI GATC 5 cut(s) 77, 130, 256, 460, 478
Sau96I GGNCC 2 cut(s) 290, 335
ScaI AGTACT 1 cut(s) 602
SchI GAGTC 4 cut(s) 360, 565, 1124, 1159
ScrFI CCNGG 3 cut(s) 150, 294, 362
SduI GDGCHC 3 cut(s) 220, 302, 976
SfaNI GCATC 1 cut(s) 508
SfuI TTCGAA 2 cut(s) 740, 755
SinI GGWCC 2 cut(s) 290, 335
SmiMI CAYNNNNRTG 2 cut(s) 618, 773
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 3 cut(s) 587, 640, 841
SsiI CCGC 1 cut(s) 893
SspI AATATT 1 cut(s) 834
SspMI CTAG 4 cut(s) 81, 117, 431, 977
StyD4I CCNGG 3 cut(s) 148, 292, 360
StyI CCWWGG 2 cut(s) 1007, 1144
TaaI ACNGT 5 cut(s) 196, 605, 617, 675, 920
TaqI TCGA 4 cut(s) 740, 755, 1163, 1168
TasI AATT 3 cut(s) 587, 640, 841
TatI WGTACW 4 cut(s) 600, 644, 675, 915
TauI GCSGC 1 cut(s) 896
TfiI GAWTC 3 cut(s) 752, 851, 1151
Tru1I TTAA 5 cut(s) 282, 354, 375, 590, 669
Tru9I TTAA 5 cut(s) 282, 354, 375, 590, 669
TscAI CASTG 2 cut(s) 199, 925
TseFI GTSAC 3 cut(s) 136, 190, 1027
TseI GCWGC 2 cut(s) 242, 982
Tsp45I GTSAC 3 cut(s) 136, 190, 1027
TspDTI ATGAA 6 cut(s) 28, 430, 675, 791, 796, 809
TspGWI ACGGA 2 cut(s) 225, 944
TspRI CASTG 2 cut(s) 199, 925
VpaK11BI GGWCC 2 cut(s) 290, 335
VspI ATTAAT 1 cut(s) 590
XbaI TCTAGA 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 165
XmnI GAANNNNTTC 1 cut(s) 800
XspI CTAG 4 cut(s) 81, 117, 431, 977
ZrmI AGTACT 1 cut(s) 602
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.