Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000182.1

Orthogroup ID

OG0003577

Physical Location & Seq

Genomic Coordinates Forward (+)

57463 .. 59837

Gene Structure 2375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000182.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgaattttttagtagtaaaagcaacagctatcttcctaattttggctcttactgtggtcgagccaaagcctgttccggatgctagaaagaagcggtctaatactgagaaattgatcaacttattggcgagtcaggatcttgtgaccaacctgcctggccagcctgctgtagacttccggcactatgctggctatgtcactgtcaatgaaccaaatggcagggctctcttttactggttttatgaggctgctactaacccagatctaaaacctcttgttttgtggcttaatggaggtcctgggtgctcttctgtgggatatggagcaacccaagagattggtccattcatagtggaaactgatggccatggacttagatttaataactactcatggaataaagaggccaacatgctgttcttggaatctccagttggggttggcttttcatactccaatacaactactgattatgataatctcggagatgcctttacagcaaatgatgcatatgcgtttctgcacaagtggtttctcaagttcccatcttacagaacaagaaccttctacattgcaggggagagttatgcaggaaaatatgttccggaactggccgagctcatcaatgacaagaatacagatccttccctccaaattgatctcaagggagtcctgctgggtaatcctgaaacatcagatgctgaggattggagaggtatagtggattatgcttggagtcatgctgtgatatcagacgaaactcacaaagttataagcgaaaactgtgattttgacggtgatacttggagtaataagatctgtgctcaagctgtggatgaagtactaaaacaatacaaggagatagacatttacagcctttatacctcagtctgcatcggtgatacagcaagttcaaatgatggttcgatgcaagtaatgatgatgaagcacacatctacaatgatgccaagaattatgggtggctatgatccgtgtctggatgattattcaagaaaattctataacagagcagatgtgcaagaggccctccatgttagtaatggtccccagctcaagaactggagcatctgcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

365

Amino Acids

40.92

Weight (kDa)

4.94

Isoelectric Point (pI)

31.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11080 AT1G11080 AT1G61130 AT4G15100
fragaria_vesca	FvH4_3g04600 FvH4_3g04600 FvH4_3g04600 FvH4_3g04620
malus_domestica	MD05G1322000.v1.1 MD10G1300000.v1.1
prunus_persica	Prupe.4G040800_v2.0.a1 Prupe.4G040800_v2.0.a1
pyrus_communis	pycom05g29630 pycom10g25270
rosa_chinensis	RchiOBHm_Chr5g0007541 RchiOBHm_Chr5g0007551
rosa_laevigata	RLG00000031466 RLG00000031467
rosa_multiflora	Rmu_ssc0000182.1_g000013
rosa_roxburghii	Rroxscaffold_1G00068870 Rroxscaffold_1G00068880
rosa_rugosa	Rorug04G0428200 Rorug04G0428300 Rorug04G0428400 Rorug04G0428500
rosa_samantha	Rh5AG055900 Rh5AG056100 Rh5BG053600 Rh5BG053700 Rh5CG063400 Rh5CG063500 Rh5DG052600 Rh5DG052700
rosa_wichuraiana	Rw5G005400 Rw5G005410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	773
Acc36I	ACCTGC	2 cut(s)	159, 1083
AccI	GTMKAC	1 cut(s)	171
AccIII	TCCGGA	2 cut(s)	76, 604
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	3 cut(s)	144, 635, 983
AcoI	YGGCCR	3 cut(s)	157, 364, 612
AcsI	RAATTY	2 cut(s)	4, 1016
AfaI	GTAC	1 cut(s)	843
AfiI	CCNNNNNNNGG	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	915, 1011
AjnI	CCWGG	2 cut(s)	154, 298
AjuI	GAANNNNNNNTTGG	4 cut(s)	401, 417, 433, 449
AloI	GAACNNNNNNTCC	2 cut(s)	585, 617
AluBI	AGCT	4 cut(s)	29, 619, 830, 1072
AluI	AGCT	4 cut(s)	29, 619, 830, 1072
Alw21I	GWGCWC	3 cut(s)	308, 621, 826
AlwI	GGATC	3 cut(s)	144, 635, 983
AlwNI	CAGNNNCTG	1 cut(s)	701
Aor13HI	TCCGGA	2 cut(s)	76, 604
AoxI	GGCC	5 cut(s)	157, 364, 405, 612, 1044
ApeKI	GCWGC	1 cut(s)	248
ApoI	RAATTY	2 cut(s)	4, 1016
AspS9I	GGNCC	4 cut(s)	296, 341, 1045, 1064
AsuHPI	GGTGA	2 cut(s)	809, 911
AvaII	GGWCC	3 cut(s)	296, 341, 1064
BalI	TGGCCA	2 cut(s)	159, 366
BanII	GRGCYC	2 cut(s)	226, 621
Bbv12I	GWGCWC	3 cut(s)	308, 621, 826
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	3 cut(s)	356, 553, 914
BciT130I	CCWGG	2 cut(s)	156, 300
BclI	TGATCA	1 cut(s)	114
BfaI	CTAG	1 cut(s)	84
BfmI	CTRYAG	2 cut(s)	168, 1090
BfuAI	ACCTGC	2 cut(s)	159, 1083
BglII	AGATCT	2 cut(s)	262, 816
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
BmcAI	AGTACT	1 cut(s)	843
Bme1390I	CCNGG	2 cut(s)	156, 300
Bme18I	GGWCC	3 cut(s)	296, 341, 1064
BmgT120I	GGNCC	4 cut(s)	296, 341, 1045, 1064
BmiI	GGNNCC	1 cut(s)	1066
BmrFI	CCNGG	2 cut(s)	156, 300
BmsI	GCATC	7 cut(s)	70, 478, 496, 688, 903, 918, 954
BpmI	CTGGAG	1 cut(s)	414
Bpu10I	CCTNAGC	1 cut(s)	702
BpuEI	CTTGAG	4 cut(s)	521, 647, 810, 1058
BsaJI	CCNNGG	2 cut(s)	299, 367
BsaWI	WCCGGW	2 cut(s)	76, 604
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse1I	ACTGG	4 cut(s)	239, 431, 615, 1085
Bse3DI	GCAATG	1 cut(s)	570
BseAI	TCCGGA	2 cut(s)	76, 604
BseBI	CCWGG	2 cut(s)	156, 300
BseDI	CCNNGG	2 cut(s)	299, 367
BseGI	GGATG	3 cut(s)	85, 841, 1006
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	3 cut(s)	96, 693, 900
BseNI	ACTGG	4 cut(s)	239, 431, 615, 1085
BseXI	GCAGC	1 cut(s)	235
BseYI	CCCAGC	2 cut(s)	676, 1068
BsgI	GTGCAG	1 cut(s)	506
BshFI	GGCC	5 cut(s)	159, 366, 407, 614, 1046
BsiHKAI	GWGCWC	3 cut(s)	308, 621, 826
BsiSI	CCGG	3 cut(s)	77, 178, 605
BslFI	GGGAC	1 cut(s)	1050
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	1050
BsnI	GGCC	5 cut(s)	159, 366, 407, 614, 1046
Bsp1286I	GDGCHC	4 cut(s)	226, 308, 621, 826
Bsp13I	TCCGGA	2 cut(s)	76, 604
Bsp143I	GATC	7 cut(s)	114, 136, 262, 640, 658, 816, 988
Bsp19I	CCATGG	1 cut(s)	367
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	5 cut(s)	159, 366, 407, 614, 1046
BspCNI	CTCAG	3 cut(s)	97, 694, 899
BspEI	TCCGGA	2 cut(s)	76, 604
BspLI	GGNNCC	1 cut(s)	1066
BspMAI	CTGCAG	1 cut(s)	1094
BspMI	ACCTGC	2 cut(s)	159, 1083
BspPI	GGATC	3 cut(s)	144, 635, 983
BspQI	GCTCTTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	4 cut(s)	239, 431, 615, 1085
BssECI	CCNNGG	2 cut(s)	299, 367
BssMI	GATC	7 cut(s)	114, 136, 262, 640, 658, 816, 988
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	2 cut(s)	156, 300
Bst4CI	ACNGT	4 cut(s)	55, 202, 785, 797
Bst6I	CTCTTC	1 cut(s)	313
BstAPI	GCANNNNNTGC	1 cut(s)	506
BstC8I	GCNNGC	3 cut(s)	161, 165, 190
BstDEI	CTNAG	4 cut(s)	105, 374, 702, 886
BstDSI	CCRYGG	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	85, 841, 1006
BstKTI	GATC	7 cut(s)	117, 139, 265, 643, 661, 819, 991
BstMBI	GATC	7 cut(s)	114, 136, 262, 640, 658, 816, 988
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 497, 506
BstNI	CCWGG	2 cut(s)	156, 300
BstNSI	RCATGY	1 cut(s)	415
BstSCI	CCNGG	2 cut(s)	154, 298
BstSFI	CTRYAG	2 cut(s)	168, 1090
BstV1I	GCAGC	1 cut(s)	235
BstX2I	RGATCY	4 cut(s)	136, 262, 640, 816
BstXI	CCANNNNNNTGG	1 cut(s)	338
BstYI	RGATCY	4 cut(s)	136, 262, 640, 816
BsuRI	GGCC	5 cut(s)	159, 366, 407, 614, 1046
BtgI	CCRYGG	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	85, 841, 1006
BtsIMutI	CAGTG	1 cut(s)	198
BveI	ACCTGC	2 cut(s)	159, 1083
Cac8I	GCNNGC	3 cut(s)	161, 165, 190
CaiI	CAGNNNCTG	1 cut(s)	701
Cfr13I	GGNCC	4 cut(s)	296, 341, 1045, 1064
Csp6I	GTAC	1 cut(s)	842
CviAII	CATG	5 cut(s)	368, 393, 412, 740, 1052
CviQI	GTAC	1 cut(s)	842
DdeI	CTNAG	4 cut(s)	105, 374, 702, 886
DpnI	GATC	7 cut(s)	116, 138, 264, 642, 660, 818, 990
DpnII	GATC	7 cut(s)	114, 136, 262, 640, 658, 816, 988
EaeI	YGGCCR	3 cut(s)	157, 364, 612
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Ecl136II	GAGCTC	1 cut(s)	619
Eco130I	CCWWGG	1 cut(s)	367
Eco24I	GRGCYC	2 cut(s)	226, 621
Eco32I	GATATC	1 cut(s)	750
Eco47I	GGWCC	3 cut(s)	296, 341, 1064
Eco53kI	GAGCTC	1 cut(s)	619
EcoICRI	GAGCTC	1 cut(s)	619
EcoO109I	RGGNCCY	2 cut(s)	296, 1045
EcoRII	CCWGG	2 cut(s)	154, 298
EcoRV	GATATC	1 cut(s)	750
EcoT14I	CCWWGG	1 cut(s)	367
EcoT22I	ATGCAT	1 cut(s)	511
EcoT38I	GRGCYC	2 cut(s)	226, 621
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	5 cut(s)	371, 396, 415, 743, 1055
FaqI	GGGAC	1 cut(s)	1050
FatI	CATG	5 cut(s)	367, 392, 411, 739, 1051
FauNDI	CATATG	1 cut(s)	511
FbaI	TGATCA	1 cut(s)	114
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	1 cut(s)	249
FokI	GGATG	3 cut(s)	92, 848, 1013
FriOI	GRGCYC	2 cut(s)	226, 621
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	1 cut(s)	249
GsaI	CCCAGC	2 cut(s)	680, 1072
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	5 cut(s)	159, 366, 407, 614, 1046
HapII	CCGG	3 cut(s)	77, 178, 605
Hin1II	CATG	5 cut(s)	371, 396, 415, 743, 1055
HinfI	GANTC	4 cut(s)	130, 425, 669, 736
HpaII	CCGG	3 cut(s)	77, 178, 605
HphI	GGTGA	2 cut(s)	809, 911
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	3 cut(s)	485, 697, 754
Hpy188III	TCNNGA	7 cut(s)	77, 134, 605, 686, 998, 1011, 1075
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	2 cut(s)	574, 654
HpyCH4III	ACNGT	4 cut(s)	55, 202, 785, 797
HpyCH4V	TGCA	8 cut(s)	509, 523, 575, 590, 894, 931, 1039, 1092
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 497, 506
HpyF3I	CTNAG	4 cut(s)	105, 374, 702, 886
Hsp92II	CATG	5 cut(s)	371, 396, 415, 743, 1055
Kpn2I	TCCGGA	2 cut(s)	76, 604
Ksp22I	TGATCA	1 cut(s)	114
Kzo9I	GATC	7 cut(s)	114, 136, 262, 640, 658, 816, 988
LguI	GCTCTTC	1 cut(s)	313
LmnI	GCTCC	2 cut(s)	323, 1083
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	7 cut(s)	70, 478, 496, 688, 903, 918, 954
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	2 cut(s)	142, 196
MalI	GATC	7 cut(s)	116, 138, 264, 642, 660, 818, 990
MboI	GATC	7 cut(s)	114, 136, 262, 640, 658, 816, 988
MboII	GAAGA	2 cut(s)	25, 300
MflI	RGATCY	4 cut(s)	136, 262, 640, 816
MhlI	GDGCHC	4 cut(s)	226, 308, 621, 826
MlsI	TGGCCA	2 cut(s)	159, 366
MluCI	AATT	6 cut(s)	4, 39, 110, 654, 972, 1016
MluNI	TGGCCA	2 cut(s)	159, 366
MlyI	GAGTC	3 cut(s)	139, 678, 745
Mox20I	TGGCCA	2 cut(s)	159, 366
Mph1103I	ATGCAT	1 cut(s)	511
MroI	TCCGGA	2 cut(s)	76, 604
MscI	TGGCCA	2 cut(s)	159, 366
MseI	TTAA	2 cut(s)	288, 381
Msp20I	TGGCCA	2 cut(s)	159, 366
MspI	CCGG	3 cut(s)	77, 178, 605
MspR9I	CCNGG	2 cut(s)	156, 300
MvaI	CCWGG	2 cut(s)	156, 300
MwoI	GCNNNNNNNGC	3 cut(s)	160, 497, 506
NcoI	CCATGG	1 cut(s)	367
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	7 cut(s)	114, 136, 262, 640, 658, 816, 988
NlaIII	CATG	5 cut(s)	371, 396, 415, 743, 1055
NlaIV	GGNNCC	1 cut(s)	1066
NmeAIII	GCCGAG	1 cut(s)	640
NmuCI	GTSAC	2 cut(s)	142, 196
NsiI	ATGCAT	1 cut(s)	511
NspI	RCATGY	1 cut(s)	415
PciSI	GCTCTTC	1 cut(s)	313
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	3 cut(s)	138, 677, 744
PpsI	GAGTC	3 cut(s)	138, 677, 744
PpuMI	RGGWCCY	1 cut(s)	296
PsiI	TTATAA	1 cut(s)	773
Psp124BI	GAGCTC	1 cut(s)	621
Psp5II	RGGWCCY	1 cut(s)	296
Psp6I	CCWGG	2 cut(s)	154, 298
PspFI	CCCAGC	2 cut(s)	676, 1068
PspGI	CCWGG	2 cut(s)	154, 298
PspN4I	GGNNCC	1 cut(s)	1066
PspPI	GGNCC	4 cut(s)	296, 341, 1045, 1064
PspPPI	RGGWCCY	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	1094
PstNI	CAGNNNCTG	1 cut(s)	701
PsuI	RGATCY	4 cut(s)	136, 262, 640, 816
RsaI	GTAC	1 cut(s)	843
RsaNI	GTAC	1 cut(s)	842
SacI	GAGCTC	1 cut(s)	621
SapI	GCTCTTC	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	288, 381
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	7 cut(s)	114, 136, 262, 640, 658, 816, 988
Sau96I	GGNCC	4 cut(s)	296, 341, 1045, 1064
ScaI	AGTACT	1 cut(s)	843
SchI	GAGTC	3 cut(s)	139, 678, 745
ScrFI	CCNGG	2 cut(s)	156, 300
SduI	GDGCHC	4 cut(s)	226, 308, 621, 826
SfaNI	GCATC	7 cut(s)	70, 478, 496, 688, 903, 918, 954
SfcI	CTRYAG	2 cut(s)	168, 1090
SinI	GGWCC	3 cut(s)	296, 341, 1064
SmlI	CTYRAG	4 cut(s)	536, 662, 825, 1073
SmoI	CTYRAG	4 cut(s)	536, 662, 825, 1073
Sse9I	AATT	6 cut(s)	4, 39, 110, 654, 972, 1016
SsiI	CCGC	1 cut(s)	94
SspMI	CTAG	1 cut(s)	84
SstI	GAGCTC	1 cut(s)	621
StyD4I	CCNGG	2 cut(s)	154, 298
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	4 cut(s)	55, 202, 785, 797
TaqI	TCGA	2 cut(s)	60, 926
TasI	AATT	6 cut(s)	4, 39, 110, 654, 972, 1016
TatI	WGTACW	1 cut(s)	841
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	288, 381
Tru9I	TTAA	2 cut(s)	288, 381
TscAI	CASTG	1 cut(s)	205
TseFI	GTSAC	2 cut(s)	142, 196
TseI	GCWGC	1 cut(s)	248
Tsp45I	GTSAC	2 cut(s)	142, 196
TspDTI	ATGAA	6 cut(s)	17, 222, 337, 438, 852, 959
TspGWI	ACGGA	1 cut(s)	981
TspRI	CASTG	1 cut(s)	205
VpaK11BI	GGWCC	3 cut(s)	296, 341, 1064
XapI	RAATTY	2 cut(s)	4, 1016
XceI	RCATGY	1 cut(s)	415
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1058
XmiI	GTMKAC	1 cut(s)	171
XspI	CTAG	1 cut(s)	84
ZrmI	AGTACT	1 cut(s)	843
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.