MD10G1300000.v1.1

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
38733949 .. 38738090
4142 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1300000.v1.1.491

Sequence Viewer

Length: 1431 bp
ATGAATTTTGTACAAAAAGCGACAGTTTTCTTTGTTTTGGCTCTTGTTGCACTGCTGTTTGTGGAGCCTGTTTCGGGTAGAAGGAAACGGTCTAGTACTGAGAAACGGATGAGGACTCAGGACCTTGTGACCAACTTGCCCGGCCAGCCTGCTGCAGACTTCAAGCACTACGCAGGCTATGTGACCGTGAACGAAACAAATGGGAGGGCTCTTTTTTACTGGTTTTATGAGGCTGCGTCCAACCCAGATGGAAAACCTCTGGTGTTGTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACCCAAGAGATTGGTCCATTCTTAGTGGACACTGATGGACATGGAATTAAATCTAATAACTACTCATGGAATAAAGAGGCCAACATGTTATTCTTGGAATCTCCAGTTGGGGTTGGCTTTTCATACTCTAATACAACTAGTGATTATGATAATCTCGGAGATGGCTTTACAGCGAATGATGCGTATAACTTCTTGCATAAGTGGTATCTCAAGTTCCCATCATACAGAAGAAGGACCTTCTACATTTCTGGAGAGAGTTATGCAGGAAAGTATGTTCCGGAGCTCGCCGAGCTCATATATGACAAGAACAATAATCCTTCCCTCCATATTGATCTCAAGGGTATCCTGTTGGGTAATCCTGAAACATCTGATGCTGATGACTGGAGAGGTCTGGTAGATTATGCTTGGAGTCATGCTGTGATATCAGACGAAACTCACAAAGTAATAGGCGAAAGCTGTGATTTCGACAGAAATGATACTTGGAGTAACAAGGATTGTACTCTAGCTGTGGAAGAATTGCTAAAACAGTATGGGGAGATAGATATTTACAGCCTTTACACCTCAGTCTGCATTGGCGATACGGCAAGTTCAAATGATGGTTCGATGCACGTCATGATGAAGCGCACATCTACGATGATGCCAAGGATTATGGGTGGCTACGATCCATGTCTCGATGAATATTCAAAAACCTTCTATAACAGACCAGATGTGCAAAAGGCCCTTCATGTTAGTGATGGTGTCCGGCTCAAGAACTGGAGCATCTGCAACAAAAAAATATTCGACGACTGGGCATATACGAAGCCATCTGTTCTCCCTATATACAAGAAACTCATTGCAGCAGGACTTAGAATATGGGTGTACAGCGGAGACACAGATGGAAGAGTTCCTGTGCTTTCCACAAGATACAGCTTGAGTGCTCTGGGATTGCCTATTACTAAGGCATGGAGACCTTGGTACCACGAGAAGCAGGTCAGTGGATGGTTTCAAGAATATGAAGGTCTTACATTTGCAACATTTAGAGGAGCTGGGCATGCAGTTCCCTGCTTCAAACCAAGCAACTCACTGGCTTTCTTCACGTCTTTTCTCCTTGGTGAACCTCTGCCCGCCTCTCGAGTGTAA

Protein Analysis

477

Amino Acids

53.59

Weight (kDa)

6.23

Isoelectric Point (pI)

37.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 47 - 467 3.6e-141 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1270
Acc65I GGTACC 1 cut(s) 1266
AccB1I GGYRCC 1 cut(s) 1266
AccIII TCCGGA 1 cut(s) 589
AciI CCGC 2 cut(s) 1176, 1416
AclWI GGATC 1 cut(s) 968
AcoI YGGCCR 1 cut(s) 142
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 5 cut(s) 12, 97, 811, 1172, 1268
AfiI CCNNNNNNNGG 1 cut(s) 74
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 5 cut(s) 163, 903, 996, 1298, 1360
AhlI ACTAGT 1 cut(s) 449
AjiI CACGTC 2 cut(s) 922, 1389
AjnI CCWGG 1 cut(s) 283
AjuI GAANNNNNNNTTGG 6 cut(s) 386, 402, 418, 434, 775, 807
AloI GAACNNNNNNTCC 2 cut(s) 570, 602
AluBI AGCT 6 cut(s) 595, 604, 768, 818, 1221, 1337
AluI AGCT 6 cut(s) 595, 604, 768, 818, 1221, 1337
Alw21I GWGCWC 4 cut(s) 293, 597, 606, 1231
Alw26I GTCTC 3 cut(s) 986, 1173, 1252
AlwI GGATC 1 cut(s) 968
Ama87I CYCGRG 1 cut(s) 1422
Aor13HI TCCGGA 1 cut(s) 589
AoxI GGCC 3 cut(s) 142, 390, 1029
ApeKI GCWGC 3 cut(s) 152, 233, 1148
ApoI RAATTY 1 cut(s) 4
Asp718I GGTACC 1 cut(s) 1266
AspLEI GCGC 1 cut(s) 936
AspS9I GGNCC 5 cut(s) 121, 281, 326, 546, 1030
AsuC2I CCSGG 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 1415
AvaI CYCGRG 1 cut(s) 1422
AvaII GGWCC 4 cut(s) 121, 281, 326, 546
BaeI ACNNNNGTAYC 2 cut(s) 1250, 1283
BanI GGYRCC 1 cut(s) 1266
BanII GRGCYC 3 cut(s) 211, 597, 606
BauI CACGAG 1 cut(s) 1271
Bbv12I GWGCWC 4 cut(s) 293, 597, 606, 1231
BbvI GCAGC 3 cut(s) 139, 220, 1160
BccI CCATC 9 cut(s) 242, 341, 467, 538, 902, 1040, 1123, 1181, 1284
BceAI ACGGC 1 cut(s) 909
BciT130I CCWGG 1 cut(s) 285
BciVI GTATCC 1 cut(s) 665
BcnI CCSGG 1 cut(s) 141
BcoDI GTCTC 3 cut(s) 986, 1173, 1252
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 3 cut(s) 93, 450, 815
BfmI CTRYAG 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 1270
BfuI GTATCC 1 cut(s) 665
BisI GCNGC 3 cut(s) 153, 234, 1149
BlsI GCNGC 3 cut(s) 154, 235, 1150
BmcAI AGTACT 1 cut(s) 97
Bme1390I CCNGG 2 cut(s) 141, 285
Bme18I GGWCC 4 cut(s) 121, 281, 326, 546
BmeT110I CYCGRG 1 cut(s) 1422
BmgBI CACGTC 2 cut(s) 922, 1389
BmgT120I GGNCC 5 cut(s) 121, 281, 326, 546, 1030
BmiI GGNNCC 2 cut(s) 66, 1268
BmrFI CCNGG 2 cut(s) 141, 285
BmrI ACTGGG 1 cut(s) 1108
BmsI GCATC 5 cut(s) 481, 673, 906, 939, 1080
BmuI ACTGGG 1 cut(s) 1108
BpmI CTGGAG 4 cut(s) 399, 582, 715, 1087
BpuEI CTTGAG 4 cut(s) 506, 632, 1043, 1243
BpuMI CCSGG 1 cut(s) 141
BsaI GGTCTC 1 cut(s) 1252
BsaJI CCNNGG 4 cut(s) 284, 953, 1262, 1399
BsaWI WCCGGW 1 cut(s) 589
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse1I ACTGG 6 cut(s) 224, 416, 698, 1070, 1103, 1380
Bse3DI GCAATG 1 cut(s) 1143
BseAI TCCGGA 1 cut(s) 589
BseBI CCWGG 1 cut(s) 285
BseDI CCNNGG 4 cut(s) 284, 953, 1262, 1399
BseGI GGATG 2 cut(s) 114, 1295
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 1 cut(s) 1143
BseMII CTCAG 3 cut(s) 90, 131, 888
BseNI ACTGG 6 cut(s) 224, 416, 698, 1070, 1103, 1380
BseRI GAGGAG 1 cut(s) 1347
BseXI GCAGC 3 cut(s) 139, 220, 1160
BseYI CCCAGC 1 cut(s) 1337
BshFI GGCC 3 cut(s) 144, 392, 1031
BshNI GGYRCC 1 cut(s) 1266
BsiHKAI GWGCWC 4 cut(s) 293, 597, 606, 1231
BsiHKCI CYCGRG 1 cut(s) 1422
BsiSI CCGG 3 cut(s) 141, 590, 1054
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 3 cut(s) 986, 1173, 1252
BsnI GGCC 3 cut(s) 144, 392, 1031
Bso31I GGTCTC 1 cut(s) 1252
BsoBI CYCGRG 1 cut(s) 1422
Bsp1286I GDGCHC 5 cut(s) 211, 293, 597, 606, 1231
Bsp13I TCCGGA 1 cut(s) 589
Bsp1407I TGTACA 2 cut(s) 10, 1170
Bsp143I GATC 2 cut(s) 643, 973
BspACI CCGC 2 cut(s) 1176, 1416
BspANI GGCC 3 cut(s) 144, 392, 1031
BspCNI CTCAG 3 cut(s) 91, 130, 887
BspEI TCCGGA 1 cut(s) 589
BspHI TCATGA 1 cut(s) 924
BspLI GGNNCC 2 cut(s) 66, 1268
BspMAI CTGCAG 1 cut(s) 157
BspMI ACCTGC 1 cut(s) 1270
BspPI GGATC 1 cut(s) 968
BspQI GCTCTTC 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 1266
BspTNI GGTCTC 1 cut(s) 1252
BsrDI GCAATG 1 cut(s) 1143
BsrGI TGTACA 2 cut(s) 10, 1170
BsrI ACTGG 6 cut(s) 224, 416, 698, 1070, 1103, 1380
BssECI CCNNGG 4 cut(s) 284, 953, 1262, 1399
BssMI GATC 2 cut(s) 643, 973
BssSI CACGAG 1 cut(s) 1271
BssT1I CCWWGG 3 cut(s) 953, 1262, 1399
Bst2BI CACGAG 1 cut(s) 1271
Bst2UI CCWGG 1 cut(s) 285
Bst4CI ACNGT 4 cut(s) 25, 90, 187, 840
Bst6I CTCTTC 2 cut(s) 298, 1186
BstAUI TGTACA 2 cut(s) 10, 1170
BstC8I GCNNGC 6 cut(s) 146, 150, 175, 597, 1344, 1416
BstDEI CTNAG 6 cut(s) 99, 117, 334, 874, 1157, 1248
BstF5I GGATG 2 cut(s) 114, 1295
BstHHI GCGC 1 cut(s) 936
BstKTI GATC 2 cut(s) 646, 976
BstMAI GTCTC 3 cut(s) 986, 1173, 1252
BstMBI GATC 2 cut(s) 643, 973
BstMWI GCNNNNNNNGC 5 cut(s) 47, 145, 491, 601, 1343
BstNI CCWGG 1 cut(s) 285
BstNSI RCATGY 2 cut(s) 400, 1346
BstSCI CCNGG 2 cut(s) 139, 283
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 3 cut(s) 139, 220, 1160
BstXI CCANNNNNNTGG 1 cut(s) 323
BsuI GTATCC 1 cut(s) 665
BsuRI GGCC 3 cut(s) 144, 392, 1031
BtrI CACGTC 2 cut(s) 922, 1389
BtsCI GGATG 2 cut(s) 114, 1295
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 4 cut(s) 50, 342, 1291, 1373
BveI ACCTGC 1 cut(s) 1270
Cac8I GCNNGC 6 cut(s) 146, 150, 175, 597, 1344, 1416
CciI TCATGA 1 cut(s) 924
CfoI GCGC 1 cut(s) 936
Cfr13I GGNCC 5 cut(s) 121, 281, 326, 546, 1030
CseI GACGC 1 cut(s) 225
Csp6I GTAC 5 cut(s) 11, 96, 810, 1171, 1267
CviAII CATG 9 cut(s) 353, 378, 397, 725, 925, 978, 1037, 1254, 1343
CviQI GTAC 5 cut(s) 11, 96, 810, 1171, 1267
DdeI CTNAG 6 cut(s) 99, 117, 334, 874, 1157, 1248
DpnI GATC 2 cut(s) 645, 975
DpnII GATC 2 cut(s) 643, 973
EaeI YGGCCR 1 cut(s) 142
Eam1104I CTCTTC 2 cut(s) 298, 1186
EarI CTCTTC 2 cut(s) 298, 1186
Ecl136II GAGCTC 2 cut(s) 595, 604
Eco130I CCWWGG 3 cut(s) 953, 1262, 1399
Eco24I GRGCYC 3 cut(s) 211, 597, 606
Eco31I GGTCTC 1 cut(s) 1252
Eco32I GATATC 1 cut(s) 735
Eco47I GGWCC 4 cut(s) 121, 281, 326, 546
Eco53kI GAGCTC 2 cut(s) 595, 604
Eco88I CYCGRG 1 cut(s) 1422
EcoICRI GAGCTC 2 cut(s) 595, 604
EcoO109I RGGNCCY 4 cut(s) 121, 281, 546, 1030
EcoRII CCWGG 1 cut(s) 283
EcoRV GATATC 1 cut(s) 735
EcoT14I CCWWGG 3 cut(s) 953, 1262, 1399
EcoT38I GRGCYC 3 cut(s) 211, 597, 606
ErhI CCWWGG 3 cut(s) 953, 1262, 1399
FaeI CATG 9 cut(s) 356, 381, 400, 728, 928, 981, 1040, 1257, 1346
FatI CATG 9 cut(s) 352, 377, 396, 724, 924, 977, 1036, 1253, 1342
FauI CCCGC 1 cut(s) 1423
Fnu4HI GCNGC 3 cut(s) 153, 234, 1149
FokI GGATG 2 cut(s) 121, 1302
FriOI GRGCYC 3 cut(s) 211, 597, 606
Fsp4HI GCNGC 3 cut(s) 153, 234, 1149
FspBI CTAG 3 cut(s) 93, 450, 815
GlaI GCGC 1 cut(s) 935
GluI GCNGC 3 cut(s) 153, 234, 1149
GsaI CCCAGC 1 cut(s) 1341
GsuI CTGGAG 4 cut(s) 399, 582, 715, 1087
HaeIII GGCC 3 cut(s) 144, 392, 1031
HapII CCGG 3 cut(s) 141, 590, 1054
HgaI GACGC 1 cut(s) 225
HhaI GCGC 1 cut(s) 936
Hin1II CATG 9 cut(s) 356, 381, 400, 728, 928, 981, 1040, 1257, 1346
Hin6I GCGC 1 cut(s) 934
HinP1I GCGC 1 cut(s) 934
HinfI GANTC 3 cut(s) 115, 410, 721
HpaII CCGG 3 cut(s) 141, 590, 1054
HphI GGTGA 1 cut(s) 1415
Hpy166II GTNNAC 4 cut(s) 190, 340, 1171, 1406
Hpy188I TCNGA 3 cut(s) 470, 682, 739
Hpy188III TCNNGA 9 cut(s) 119, 561, 590, 671, 925, 983, 1060, 1298, 1422
Hpy8I GTNNAC 4 cut(s) 190, 340, 1171, 1406
Hpy99I CGWCG 1 cut(s) 1097
HpyAV CCTTC 7 cut(s) 75, 537, 559, 639, 1012, 1043, 1301
HpyCH4III ACNGT 4 cut(s) 25, 90, 187, 840
HpyCH4IV ACGT 2 cut(s) 921, 1388
HpyF10VI GCNNNNNNNGC 5 cut(s) 47, 145, 491, 601, 1343
HpyF3I CTNAG 6 cut(s) 99, 117, 334, 874, 1157, 1248
HpySE526I ACGT 2 cut(s) 921, 1388
Hsp92II CATG 9 cut(s) 356, 381, 400, 728, 928, 981, 1040, 1257, 1346
HspAI GCGC 1 cut(s) 934
Kpn2I TCCGGA 1 cut(s) 589
KpnI GGTACC 1 cut(s) 1270
Kzo9I GATC 2 cut(s) 643, 973
LguI GCTCTTC 1 cut(s) 298
LmnI GCTCC 5 cut(s) 64, 308, 592, 1068, 1334
Lsp1109I GCAGC 3 cut(s) 139, 220, 1160
LweI GCATC 5 cut(s) 481, 673, 906, 939, 1080
MaeI CTAG 3 cut(s) 93, 450, 815
MaeII ACGT 2 cut(s) 921, 1388
MaeIII GTNAC 3 cut(s) 127, 181, 797
MalI GATC 2 cut(s) 645, 975
MboI GATC 2 cut(s) 643, 973
MboII GAAGA 5 cut(s) 285, 552, 836, 1203, 1375
MhlI GDGCHC 5 cut(s) 211, 293, 597, 606, 1231
MluCI AATT 3 cut(s) 4, 357, 827
MlyI GAGTC 2 cut(s) 109, 730
MmeI TCCRAC 1 cut(s) 264
MroI TCCGGA 1 cut(s) 589
MseI TTAA 2 cut(s) 273, 360
MslI CAYNNNNRTG 1 cut(s) 1041
MspA1I CMGCKG 1 cut(s) 1176
MspI CCGG 3 cut(s) 141, 590, 1054
MspR9I CCNGG 2 cut(s) 141, 285
MvaI CCWGG 1 cut(s) 285
MwoI GCNNNNNNNGC 5 cut(s) 47, 145, 491, 601, 1343
NciI CCSGG 1 cut(s) 141
NdeII GATC 2 cut(s) 643, 973
NlaIII CATG 9 cut(s) 356, 381, 400, 728, 928, 981, 1040, 1257, 1346
NlaIV GGNNCC 2 cut(s) 66, 1268
NmeAIII GCCGAG 1 cut(s) 625
NmuCI GTSAC 2 cut(s) 127, 181
NspI RCATGY 2 cut(s) 400, 1346
PaeI GCATGC 1 cut(s) 1346
PaeR7I CTCGAG 1 cut(s) 1422
PagI TCATGA 1 cut(s) 924
PciI ACATGT 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 298
PfeI GAWTC 1 cut(s) 410
PkrI GCNGC 3 cut(s) 154, 235, 1150
PleI GAGTC 2 cut(s) 109, 729
PpsI GAGTC 2 cut(s) 109, 729
PpuMI RGGWCCY 3 cut(s) 121, 281, 546
PscI ACATGT 1 cut(s) 396
Psp124BI GAGCTC 2 cut(s) 597, 606
Psp5II RGGWCCY 3 cut(s) 121, 281, 546
Psp6I CCWGG 1 cut(s) 283
PspFI CCCAGC 1 cut(s) 1337
PspGI CCWGG 1 cut(s) 283
PspN4I GGNNCC 2 cut(s) 66, 1268
PspPI GGNCC 5 cut(s) 121, 281, 326, 546, 1030
PspPPI RGGWCCY 3 cut(s) 121, 281, 546
PsrI GAACNNNNNNTAC 2 cut(s) 509, 541
PstI CTGCAG 1 cut(s) 157
RsaI GTAC 5 cut(s) 12, 97, 811, 1172, 1268
RsaNI GTAC 5 cut(s) 11, 96, 810, 1171, 1267
RseI CAYNNNNRTG 1 cut(s) 1041
SacI GAGCTC 2 cut(s) 597, 606
SapI GCTCTTC 1 cut(s) 298
SaqAI TTAA 2 cut(s) 273, 360
SatI GCNGC 3 cut(s) 153, 234, 1149
Sau3AI GATC 2 cut(s) 643, 973
Sau96I GGNCC 5 cut(s) 121, 281, 326, 546, 1030
ScaI AGTACT 1 cut(s) 97
SchI GAGTC 2 cut(s) 109, 730
ScrFI CCNGG 2 cut(s) 141, 285
SduI GDGCHC 5 cut(s) 211, 293, 597, 606, 1231
SfaNI GCATC 5 cut(s) 481, 673, 906, 939, 1080
SfcI CTRYAG 1 cut(s) 153
Sfr274I CTCGAG 1 cut(s) 1422
SinI GGWCC 4 cut(s) 121, 281, 326, 546
SlaI CTCGAG 1 cut(s) 1422
SmiMI CAYNNNNRTG 1 cut(s) 1041
SmlI CTYRAG 5 cut(s) 521, 647, 1058, 1222, 1422
SmoI CTYRAG 5 cut(s) 521, 647, 1058, 1222, 1422
SpeI ACTAGT 1 cut(s) 449
SphI GCATGC 1 cut(s) 1346
Sse9I AATT 3 cut(s) 4, 357, 827
SsiI CCGC 2 cut(s) 1176, 1416
SspI AATATT 2 cut(s) 992, 1089
SspMI CTAG 3 cut(s) 93, 450, 815
SstI GAGCTC 2 cut(s) 597, 606
StyD4I CCNGG 2 cut(s) 139, 283
StyI CCWWGG 3 cut(s) 953, 1262, 1399
TaaI ACNGT 4 cut(s) 25, 90, 187, 840
TaiI ACGT 2 cut(s) 924, 1391
TaqI TCGA 5 cut(s) 777, 914, 984, 1092, 1423
TasI AATT 3 cut(s) 4, 357, 827
TatI WGTACW 4 cut(s) 10, 95, 809, 1170
TfiI GAWTC 1 cut(s) 410
Tru1I TTAA 2 cut(s) 273, 360
Tru9I TTAA 2 cut(s) 273, 360
TscAI CASTG 4 cut(s) 57, 349, 1291, 1380
TseFI GTSAC 2 cut(s) 127, 181
TseI GCWGC 3 cut(s) 152, 233, 1148
Tsp45I GTSAC 2 cut(s) 127, 181
TspDTI ATGAA 6 cut(s) 17, 423, 944, 1002, 1025, 1320
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 4 cut(s) 57, 349, 1291, 1380
VpaK11BI GGWCC 4 cut(s) 121, 281, 326, 546
XapI RAATTY 1 cut(s) 4
XceI RCATGY 2 cut(s) 400, 1346
XhoI CTCGAG 1 cut(s) 1422
XspI CTAG 3 cut(s) 93, 450, 815
ZrmI AGTACT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.