Rroxscaffold_1G00068880

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
89940534 .. 89944063
3530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00068880.1

Sequence Viewer

Length: 1254 bp
ATGAATTTTGTAGTAGTAAAAGCAACAGCTATCTTCCTAATTTTGGCTCTTACTGTGGTCGAGCCTAAGCCTGTTCCGGATGCTAGAAAGAAGCGGTCTAATACTGAGAAATTGATCAACTCATTGGCGAGTCAGGATCTTGTGACCAACCTGCCTGGCCAGCCTGCTGTAGACTTCCGGCACTATGCTGGCTATGTCACTGTCAATGAAACAAATGGCAGGGCTCTCTTTTACTGGTTTTATGAGGCTGCTACTAACCCAGATCTAAAACCTCTTGTTTTGTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACCCAAGAGATTGGTCCATTCCTAGTGGAAACTGATGGCCATGGACTTAGATTTAATAACTACTCATGGAATAAAGGAAAATATGTTCCAGAGCTGGCCGAGCTCATCAATGACAAGAATACAGATCCTTCCCTCCATATTGATCTCAAGGGAGTCCTGCTGGGTAATCCTGAAACCTCAGATGCTGAGGATTGGAGAGGTATAGTGGATTATGCTTGGAGTCATGCTGTGATATCAGATGAAACTCACAAAGTTATACGCGAAAACTGTGATTTTGACGGTGATACTTGGAGTAATAAGATCTGTGCTCAAGCTGTGGATGAAGTACTAAAACAATACAAGGAGATAGACATTTACAGCCTTTATACCTCAGTCTGCATCGGTGATACAGCAAGTTCAAATGATGGTTCGATGCAAGTAATGATGATGAAGCACACATCTACAATGATGCCAAGAATTATGGGTGGCTATGATCCGTGTCTGGATGATTATTCAAGAAAATTCTATAACAGAGCAGATGTGCAAAAGGCCCTCCATGTTAGTAATGGTCCCCAGCTCAAGAACTGGAGCATCTGCAGTGCCAAAATATTTCATGAGTGGGTTGATTCAAAGCCATCTGTTCTTCCTATATACAAGAAACTCATTGCAGCAGGAATGAGAATATTAGTGTACAGTGGAGACACGGATGGAAGAGTTCCTGTGCTGTCCACGAGATATAGCATAAGTGCTCTGGGACTGCCTATTACAAAAGCATGGACACCGTGGTACCACCAAAAGCAGGTGAGTGGGTGGTTTCAAGAATATAAGGGGCTTACATTTGCAACATTCAGAGGAGCCGGGCATGCAGTTCCTTGCTTCAAACCAAGCAACTCACTGGCTTTATTCACCTCTTTTCTCCTTGGGGAATCTCTGCCTTCTGCTCGATGA

Protein Analysis

417

Amino Acids

46.48

Weight (kDa)

6.56

Isoelectric Point (pI)

24.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 52 - 134 1.6e-32 Serine carboxypeptidase
Peptidase_S10 PF00450 135 - 409 1.2e-66 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1096
Acc36I ACCTGC 2 cut(s) 159, 1096
Acc65I GGTACC 1 cut(s) 1092
AccB1I GGYRCC 1 cut(s) 1092
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 588
AccIII TCCGGA 1 cut(s) 76
AciI CCGC 1 cut(s) 94
AclWI GGATC 3 cut(s) 144, 446, 794
AcoI YGGCCR 3 cut(s) 157, 364, 423
AcsI RAATTY 2 cut(s) 4, 827
AfaI GTAC 3 cut(s) 654, 998, 1094
AfiI CCNNNNNNNGG 2 cut(s) 43, 1105
AgsI TTSAA 5 cut(s) 726, 822, 936, 1124, 1186
AjnI CCWGG 2 cut(s) 154, 298
AloI GAACNNNNNNTCC 2 cut(s) 396, 428
AluBI AGCT 5 cut(s) 29, 421, 430, 641, 883
AluI AGCT 5 cut(s) 29, 421, 430, 641, 883
Alw21I GWGCWC 4 cut(s) 308, 432, 637, 1057
Alw26I GTCTC 1 cut(s) 999
AlwI GGATC 3 cut(s) 144, 446, 794
AlwNI CAGNNNCTG 1 cut(s) 512
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 4 cut(s) 157, 364, 423, 855
ApeKI GCWGC 2 cut(s) 248, 974
ApoI RAATTY 2 cut(s) 4, 827
Asp718I GGTACC 1 cut(s) 1092
AspS9I GGNCC 4 cut(s) 296, 341, 856, 875
AsuC2I CCSGG 1 cut(s) 1165
AsuHPI GGTGA 4 cut(s) 620, 722, 1120, 1204
AvaII GGWCC 3 cut(s) 296, 341, 875
BaeI ACNNNNGTAYC 2 cut(s) 1076, 1109
BalI TGGCCA 2 cut(s) 159, 366
BanI GGYRCC 1 cut(s) 1092
BanII GRGCYC 2 cut(s) 226, 432
BauI CACGAG 1 cut(s) 1036
Bbv12I GWGCWC 4 cut(s) 308, 432, 637, 1057
BbvCI CCTCAGC 1 cut(s) 513
BbvI GCAGC 2 cut(s) 235, 986
BccI CCATC 4 cut(s) 356, 725, 949, 1007
BciT130I CCWGG 2 cut(s) 156, 300
BclI TGATCA 1 cut(s) 114
BcnI CCSGG 1 cut(s) 1165
BcoDI GTCTC 1 cut(s) 999
BfaI CTAG 2 cut(s) 84, 350
BfmI CTRYAG 2 cut(s) 168, 901
BfuAI ACCTGC 2 cut(s) 159, 1096
BglII AGATCT 2 cut(s) 262, 627
BisI GCNGC 2 cut(s) 249, 975
BlsI GCNGC 2 cut(s) 250, 976
BmcAI AGTACT 1 cut(s) 654
Bme1390I CCNGG 3 cut(s) 156, 300, 1165
Bme18I GGWCC 3 cut(s) 296, 341, 875
BmgT120I GGNCC 4 cut(s) 296, 341, 856, 875
BmiI GGNNCC 3 cut(s) 877, 1094, 1162
BmrFI CCNGG 3 cut(s) 156, 300, 1165
BmsI GCATC 6 cut(s) 70, 499, 714, 729, 765, 906
BpmI CTGGAG 1 cut(s) 913
Bpu10I CCTNAGC 2 cut(s) 66, 513
BpuEI CTTGAG 3 cut(s) 458, 621, 869
BpuMI CCSGG 1 cut(s) 1165
BsaJI CCNNGG 4 cut(s) 299, 367, 1088, 1225
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 1105
Bse1I ACTGG 3 cut(s) 239, 896, 1206
Bse3DI GCAATG 1 cut(s) 969
BseAI TCCGGA 1 cut(s) 76
BseBI CCWGG 2 cut(s) 156, 300
BseDI CCNNGG 4 cut(s) 299, 367, 1088, 1225
BseGI GGATG 4 cut(s) 85, 652, 817, 1018
BseLI CCNNNNNNNGG 2 cut(s) 43, 1105
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 4 cut(s) 96, 504, 519, 711
BseNI ACTGG 3 cut(s) 239, 896, 1206
BseRI GAGGAG 1 cut(s) 1173
BseXI GCAGC 2 cut(s) 235, 986
BseYI CCCAGC 2 cut(s) 487, 879
Bsh1236I CGCG 1 cut(s) 588
BshFI GGCC 4 cut(s) 159, 366, 425, 857
BshNI GGYRCC 1 cut(s) 1092
BsiHKAI GWGCWC 4 cut(s) 308, 432, 637, 1057
BsiSI CCGG 3 cut(s) 77, 178, 1164
BslFI GGGAC 2 cut(s) 861, 1074
BslI CCNNNNNNNGG 2 cut(s) 43, 1105
BsmAI GTCTC 1 cut(s) 999
BsmFI GGGAC 2 cut(s) 861, 1074
BsnI GGCC 4 cut(s) 159, 366, 425, 857
Bsp1286I GDGCHC 5 cut(s) 226, 308, 432, 637, 1057
Bsp13I TCCGGA 1 cut(s) 76
Bsp1407I TGTACA 1 cut(s) 996
Bsp143I GATC 7 cut(s) 114, 136, 262, 451, 469, 627, 799
Bsp19I CCATGG 1 cut(s) 367
BspACI CCGC 1 cut(s) 94
BspANI GGCC 4 cut(s) 159, 366, 425, 857
BspCNI CTCAG 4 cut(s) 97, 505, 518, 710
BspEI TCCGGA 1 cut(s) 76
BspFNI CGCG 1 cut(s) 588
BspHI TCATGA 1 cut(s) 919
BspLI GGNNCC 3 cut(s) 877, 1094, 1162
BspMAI CTGCAG 1 cut(s) 905
BspMI ACCTGC 2 cut(s) 159, 1096
BspPI GGATC 3 cut(s) 144, 446, 794
BspQI GCTCTTC 1 cut(s) 313
BspT107I GGYRCC 1 cut(s) 1092
BsrDI GCAATG 1 cut(s) 969
BsrGI TGTACA 1 cut(s) 996
BsrI ACTGG 3 cut(s) 239, 896, 1206
BssECI CCNNGG 4 cut(s) 299, 367, 1088, 1225
BssMI GATC 7 cut(s) 114, 136, 262, 451, 469, 627, 799
BssSI CACGAG 1 cut(s) 1036
BssT1I CCWWGG 2 cut(s) 367, 1225
Bst2BI CACGAG 1 cut(s) 1036
Bst2UI CCWGG 2 cut(s) 156, 300
Bst4CI ACNGT 6 cut(s) 55, 202, 596, 608, 1001, 1089
Bst6I CTCTTC 2 cut(s) 313, 1012
BstAUI TGTACA 1 cut(s) 996
BstC8I GCNNGC 5 cut(s) 161, 165, 190, 423, 1170
BstDEI CTNAG 6 cut(s) 66, 105, 374, 505, 513, 697
BstDSI CCRYGG 2 cut(s) 367, 1088
BstF5I GGATG 4 cut(s) 85, 652, 817, 1018
BstFNI CGCG 1 cut(s) 588
BstKTI GATC 7 cut(s) 117, 139, 265, 454, 472, 630, 802
BstMAI GTCTC 1 cut(s) 999
BstMBI GATC 7 cut(s) 114, 136, 262, 451, 469, 627, 799
BstMWI GCNNNNNNNGC 3 cut(s) 160, 427, 1169
BstNI CCWGG 2 cut(s) 156, 300
BstNSI RCATGY 1 cut(s) 1172
BstSCI CCNGG 3 cut(s) 154, 298, 1163
BstSFI CTRYAG 2 cut(s) 168, 901
BstUI CGCG 1 cut(s) 588
BstV1I GCAGC 2 cut(s) 235, 986
BstX2I RGATCY 4 cut(s) 136, 262, 451, 627
BstXI CCANNNNNNTGG 1 cut(s) 338
BstYI RGATCY 4 cut(s) 136, 262, 451, 627
BsuRI GGCC 4 cut(s) 159, 366, 425, 857
BtgI CCRYGG 2 cut(s) 367, 1088
BtsCI GGATG 4 cut(s) 85, 652, 817, 1018
BtsI GCAGTG 1 cut(s) 910
BtsIMutI CAGTG 4 cut(s) 198, 910, 1006, 1199
BveI ACCTGC 2 cut(s) 159, 1096
Cac8I GCNNGC 5 cut(s) 161, 165, 190, 423, 1170
CaiI CAGNNNCTG 1 cut(s) 512
CciI TCATGA 1 cut(s) 919
Cfr13I GGNCC 4 cut(s) 296, 341, 856, 875
Csp6I GTAC 3 cut(s) 653, 997, 1093
CviAII CATG 7 cut(s) 368, 393, 551, 863, 920, 1080, 1169
CviQI GTAC 3 cut(s) 653, 997, 1093
DdeI CTNAG 6 cut(s) 66, 105, 374, 505, 513, 697
DpnI GATC 7 cut(s) 116, 138, 264, 453, 471, 629, 801
DpnII GATC 7 cut(s) 114, 136, 262, 451, 469, 627, 799
EaeI YGGCCR 3 cut(s) 157, 364, 423
Eam1104I CTCTTC 2 cut(s) 313, 1012
EarI CTCTTC 2 cut(s) 313, 1012
Ecl136II GAGCTC 1 cut(s) 430
Eco130I CCWWGG 2 cut(s) 367, 1225
Eco24I GRGCYC 2 cut(s) 226, 432
Eco32I GATATC 1 cut(s) 561
Eco47I GGWCC 3 cut(s) 296, 341, 875
Eco53kI GAGCTC 1 cut(s) 430
EcoICRI GAGCTC 1 cut(s) 430
EcoO109I RGGNCCY 2 cut(s) 296, 856
EcoRII CCWGG 2 cut(s) 154, 298
EcoRV GATATC 1 cut(s) 561
EcoT14I CCWWGG 2 cut(s) 367, 1225
EcoT38I GRGCYC 2 cut(s) 226, 432
ErhI CCWWGG 2 cut(s) 367, 1225
FaeI CATG 7 cut(s) 371, 396, 554, 866, 923, 1083, 1172
FaqI GGGAC 2 cut(s) 861, 1074
FatI CATG 7 cut(s) 367, 392, 550, 862, 919, 1079, 1168
FbaI TGATCA 1 cut(s) 114
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 249, 975
FokI GGATG 4 cut(s) 92, 659, 824, 1025
FriOI GRGCYC 2 cut(s) 226, 432
Fsp4HI GCNGC 2 cut(s) 249, 975
FspBI CTAG 2 cut(s) 84, 350
GluI GCNGC 2 cut(s) 249, 975
GsaI CCCAGC 2 cut(s) 491, 883
GsuI CTGGAG 1 cut(s) 913
HaeIII GGCC 4 cut(s) 159, 366, 425, 857
HapII CCGG 3 cut(s) 77, 178, 1164
Hin1II CATG 7 cut(s) 371, 396, 554, 866, 923, 1083, 1172
HinfI GANTC 5 cut(s) 130, 480, 547, 932, 1232
HpaII CCGG 3 cut(s) 77, 178, 1164
HphI GGTGA 4 cut(s) 620, 722, 1120, 1204
Hpy166II GTNNAC 3 cut(s) 172, 997, 1035
Hpy188I TCNGA 3 cut(s) 508, 565, 1157
Hpy188III TCNNGA 9 cut(s) 77, 134, 416, 497, 809, 822, 886, 920, 1124
Hpy8I GTNNAC 3 cut(s) 172, 997, 1035
HpyAV CCTTC 2 cut(s) 465, 1251
HpyCH4III ACNGT 6 cut(s) 55, 202, 596, 608, 1001, 1089
HpyCH4V TGCA 7 cut(s) 705, 742, 850, 903, 974, 1148, 1172
HpyF10VI GCNNNNNNNGC 3 cut(s) 160, 427, 1169
HpyF3I CTNAG 6 cut(s) 66, 105, 374, 505, 513, 697
Hsp92II CATG 7 cut(s) 371, 396, 554, 866, 923, 1083, 1172
Kpn2I TCCGGA 1 cut(s) 76
KpnI GGTACC 1 cut(s) 1096
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 7 cut(s) 114, 136, 262, 451, 469, 627, 799
LguI GCTCTTC 1 cut(s) 313
LmnI GCTCC 3 cut(s) 323, 894, 1160
Lsp1109I GCAGC 2 cut(s) 235, 986
LweI GCATC 6 cut(s) 70, 499, 714, 729, 765, 906
MaeI CTAG 2 cut(s) 84, 350
MaeIII GTNAC 2 cut(s) 142, 196
MalI GATC 7 cut(s) 116, 138, 264, 453, 471, 629, 801
MboI GATC 7 cut(s) 114, 136, 262, 451, 469, 627, 799
MboII GAAGA 4 cut(s) 25, 300, 941, 1029
MflI RGATCY 4 cut(s) 136, 262, 451, 627
MhlI GDGCHC 5 cut(s) 226, 308, 432, 637, 1057
MlsI TGGCCA 2 cut(s) 159, 366
MluCI AATT 5 cut(s) 4, 39, 110, 783, 827
MluNI TGGCCA 2 cut(s) 159, 366
MlyI GAGTC 3 cut(s) 139, 489, 556
Mox20I TGGCCA 2 cut(s) 159, 366
MroI TCCGGA 1 cut(s) 76
MscI TGGCCA 2 cut(s) 159, 366
MseI TTAA 2 cut(s) 288, 381
Msp20I TGGCCA 2 cut(s) 159, 366
MspI CCGG 3 cut(s) 77, 178, 1164
MspR9I CCNGG 3 cut(s) 156, 300, 1165
MvaI CCWGG 2 cut(s) 156, 300
MvnI CGCG 1 cut(s) 588
MwoI GCNNNNNNNGC 3 cut(s) 160, 427, 1169
NciI CCSGG 1 cut(s) 1165
NcoI CCATGG 1 cut(s) 367
NdeII GATC 7 cut(s) 114, 136, 262, 451, 469, 627, 799
NlaIII CATG 7 cut(s) 371, 396, 554, 866, 923, 1083, 1172
NlaIV GGNNCC 3 cut(s) 877, 1094, 1162
NmeAIII GCCGAG 1 cut(s) 451
NmuCI GTSAC 2 cut(s) 142, 196
NspI RCATGY 1 cut(s) 1172
PaeI GCATGC 1 cut(s) 1172
PagI TCATGA 1 cut(s) 919
PaqCI CACCTGC 1 cut(s) 1096
PciSI GCTCTTC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 932, 1232
PkrI GCNGC 2 cut(s) 250, 976
PleI GAGTC 3 cut(s) 138, 488, 555
PpsI GAGTC 3 cut(s) 138, 488, 555
PpuMI RGGWCCY 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 432
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 2 cut(s) 154, 298
PspFI CCCAGC 2 cut(s) 487, 879
PspGI CCWGG 2 cut(s) 154, 298
PspN4I GGNNCC 3 cut(s) 877, 1094, 1162
PspPI GGNCC 4 cut(s) 296, 341, 856, 875
PspPPI RGGWCCY 1 cut(s) 296
PstI CTGCAG 1 cut(s) 905
PstNI CAGNNNCTG 1 cut(s) 512
PsuI RGATCY 4 cut(s) 136, 262, 451, 627
RsaI GTAC 3 cut(s) 654, 998, 1094
RsaNI GTAC 3 cut(s) 653, 997, 1093
SacI GAGCTC 1 cut(s) 432
SapI GCTCTTC 1 cut(s) 313
SaqAI TTAA 2 cut(s) 288, 381
SatI GCNGC 2 cut(s) 249, 975
Sau3AI GATC 7 cut(s) 114, 136, 262, 451, 469, 627, 799
Sau96I GGNCC 4 cut(s) 296, 341, 856, 875
ScaI AGTACT 1 cut(s) 654
SchI GAGTC 3 cut(s) 139, 489, 556
ScrFI CCNGG 3 cut(s) 156, 300, 1165
SduI GDGCHC 5 cut(s) 226, 308, 432, 637, 1057
SfaNI GCATC 6 cut(s) 70, 499, 714, 729, 765, 906
SfcI CTRYAG 2 cut(s) 168, 901
SinI GGWCC 3 cut(s) 296, 341, 875
SmlI CTYRAG 3 cut(s) 473, 636, 884
SmoI CTYRAG 3 cut(s) 473, 636, 884
SphI GCATGC 1 cut(s) 1172
Sse9I AATT 5 cut(s) 4, 39, 110, 783, 827
SsiI CCGC 1 cut(s) 94
SspI AATATT 2 cut(s) 915, 990
SspMI CTAG 2 cut(s) 84, 350
SstI GAGCTC 1 cut(s) 432
StyD4I CCNGG 3 cut(s) 154, 298, 1163
StyI CCWWGG 2 cut(s) 367, 1225
TaaI ACNGT 6 cut(s) 55, 202, 596, 608, 1001, 1089
TaqI TCGA 3 cut(s) 60, 737, 1249
TasI AATT 5 cut(s) 4, 39, 110, 783, 827
TatI WGTACW 2 cut(s) 652, 996
TfiI GAWTC 2 cut(s) 932, 1232
Tru1I TTAA 2 cut(s) 288, 381
Tru9I TTAA 2 cut(s) 288, 381
TscAI CASTG 4 cut(s) 205, 910, 1006, 1206
TseFI GTSAC 2 cut(s) 142, 196
TseI GCWGC 2 cut(s) 248, 974
Tsp45I GTSAC 2 cut(s) 142, 196
TspDTI ATGAA 6 cut(s) 17, 222, 582, 663, 770, 908
TspGWI ACGGA 2 cut(s) 792, 1025
TspRI CASTG 4 cut(s) 205, 910, 1006, 1206
VpaK11BI GGWCC 3 cut(s) 296, 341, 875
XapI RAATTY 2 cut(s) 4, 827
XceI RCATGY 1 cut(s) 1172
XcmI CCANNNNNNNNNTGG 1 cut(s) 869
XmiI GTMKAC 1 cut(s) 171
XspI CTAG 2 cut(s) 84, 350
ZrmI AGTACT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.