Rh5DG052600

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
4484296 .. 4487441
3146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG052600.1

Sequence Viewer

Length: 1239 bp
ATGAATTTTGTAGTAGTAAAAGCAACAGCTATCTTCCTAATTTTGGCTCTTACTGTGGTCGAGCCTAAGCCTGTTCCGGATGCTAGAAAGAAGCGGTCCAATACTGAGAAATTGTTCAACTCATTGGCGAGTCAGGATCTTGTGACCAACCTGCCTGGCCAGCCTGCTGTAGACTTCCGGCACTATGCTGGCTATGTCACTGTCAATGAAACAAATGGCAGGGCTCTCTTTTACTGGTTTTATGAGGCTGCTACTAACCCAGATCTAAAACCTCTTGTTTTGTGGCTTAATGGAGCAAATGATGCATATGCGTTTCTGCACAAGTGGTTTCTCAAGTTCCCATCATACAGAACAAGAACCTTCTACATTGCAGGGGAGAGTTATGCAGGAAAATATGTTCCGGAGCTGGCCGAGCTCATCAATGACAAGAATACAGATCCTTCCCTCCATATTGATCTCAAGGGAGTCCTGCTGGGTAATCCTGAAACCTCAGATGCTGAGGATTGGAGAGGTATAGTGGATTATGCTTGGAGTCATGCTGTGATATCAGACGAAACTCACAGAGTTATACGCGAAAACTGTGATTTTGACGGTGATACTTGGAGTAATAAGATCTGTGCTCAAGCTGTGGATGAAGTACTAAAACAATACAAGGAGATAGACATTTACAGCCTTTATACCTCAGTCTGCATCGGTGATACAGCAAGTTCAAATGATGGTTCGATGCAAGTAATGATGATGAAGCACACATCTACAATGATGCCAAGAATTATGGGTGGCTATGATCCGTGTCTGGATGATTATTCAAGAAAATTCTATAACAGAGCAGATGTGCAAAAGGCCCTCCATGTTAGTAATGGTCCCCAGCTCAAGAACTGGAGCATCTGCAATACCAAAATATTTCATGAGTGGGTTGATTCAAAGCCATCTGTTCTTCCTATATACAAGAAACTCATTGCAGCAGGAATGAGAATATGGGTGTACAGTGGAGACACGGATGGAAGAGTTCCTGTGCTGTCCACGAGATATAGCATAAGTGCTCTGGGACTGCCTATTACAAAAGCATGGACACCGTGGTACCACCAAAAGCAGGTGAGTGGGTGGTTTCAAGAATATAAGGGGCTTACATTTGCAACATTCAGAGGTGCCGGGCATGCAGTTCCTTGCTTCAAACCAAGCAACTCACTGGCTTTATTCACCTCTTTTCTCCTTGGGGAATCTCTGCCTTCTGCTCGATGA

Protein Analysis

412

Amino Acids

46.55

Weight (kDa)

7.62

Isoelectric Point (pI)

25.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 52 - 98 3.1e-14 Serine carboxypeptidase
Peptidase_S10 PF00450 99 - 404 2.9e-85 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1081
Acc36I ACCTGC 2 cut(s) 159, 1081
Acc65I GGTACC 1 cut(s) 1077
AccB1I GGYRCC 2 cut(s) 1077, 1145
AccI GTMKAC 1 cut(s) 171
AccII CGCG 1 cut(s) 573
AccIII TCCGGA 2 cut(s) 76, 400
AciI CCGC 1 cut(s) 94
AclWI GGATC 3 cut(s) 144, 431, 779
AcoI YGGCCR 2 cut(s) 157, 408
AcsI RAATTY 2 cut(s) 4, 812
AfaI GTAC 3 cut(s) 639, 983, 1079
AfiI CCNNNNNNNGG 2 cut(s) 43, 1090
AgsI TTSAA 6 cut(s) 118, 711, 807, 921, 1109, 1171
AjnI CCWGG 1 cut(s) 154
AloI GAACNNNNNNTCC 2 cut(s) 381, 413
AluBI AGCT 5 cut(s) 29, 406, 415, 626, 868
AluI AGCT 5 cut(s) 29, 406, 415, 626, 868
Alw21I GWGCWC 3 cut(s) 417, 622, 1042
Alw26I GTCTC 1 cut(s) 984
AlwI GGATC 3 cut(s) 144, 431, 779
AlwNI CAGNNNCTG 1 cut(s) 497
Aor13HI TCCGGA 2 cut(s) 76, 400
AoxI GGCC 3 cut(s) 157, 408, 840
ApeKI GCWGC 2 cut(s) 248, 959
ApoI RAATTY 2 cut(s) 4, 812
Asp700I GAANNNNTTC 1 cut(s) 113
Asp718I GGTACC 1 cut(s) 1077
AspS9I GGNCC 3 cut(s) 96, 841, 860
AsuC2I CCSGG 1 cut(s) 1150
AsuHPI GGTGA 4 cut(s) 605, 707, 1105, 1189
AvaII GGWCC 2 cut(s) 96, 860
BaeI ACNNNNGTAYC 2 cut(s) 1061, 1094
BalI TGGCCA 1 cut(s) 159
BanI GGYRCC 2 cut(s) 1077, 1145
BanII GRGCYC 2 cut(s) 226, 417
BauI CACGAG 1 cut(s) 1021
Bbv12I GWGCWC 3 cut(s) 417, 622, 1042
BbvCI CCTCAGC 1 cut(s) 498
BbvI GCAGC 2 cut(s) 235, 971
BccI CCATC 4 cut(s) 349, 710, 934, 992
BciT130I CCWGG 1 cut(s) 156
BcnI CCSGG 1 cut(s) 1150
BcoDI GTCTC 1 cut(s) 984
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 168
BfuAI ACCTGC 2 cut(s) 159, 1081
BglII AGATCT 2 cut(s) 262, 612
BisI GCNGC 2 cut(s) 249, 960
BlsI GCNGC 2 cut(s) 250, 961
BmcAI AGTACT 1 cut(s) 639
Bme1390I CCNGG 2 cut(s) 156, 1150
Bme18I GGWCC 2 cut(s) 96, 860
BmgT120I GGNCC 3 cut(s) 96, 841, 860
BmiI GGNNCC 3 cut(s) 862, 1079, 1147
BmrFI CCNGG 2 cut(s) 156, 1150
BmsI GCATC 7 cut(s) 70, 292, 484, 699, 714, 750, 891
BpmI CTGGAG 1 cut(s) 898
Bpu10I CCTNAGC 2 cut(s) 66, 498
BpuEI CTTGAG 4 cut(s) 317, 443, 606, 854
BpuMI CCSGG 1 cut(s) 1150
BsaJI CCNNGG 2 cut(s) 1073, 1210
BsaWI WCCGGW 2 cut(s) 76, 400
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 1090
Bse1I ACTGG 3 cut(s) 239, 881, 1191
Bse3DI GCAATG 2 cut(s) 366, 954
BseAI TCCGGA 2 cut(s) 76, 400
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 2 cut(s) 1073, 1210
BseGI GGATG 4 cut(s) 85, 637, 802, 1003
BseLI CCNNNNNNNGG 2 cut(s) 43, 1090
BseMI GCAATG 2 cut(s) 366, 954
BseMII CTCAG 4 cut(s) 96, 489, 504, 696
BseNI ACTGG 3 cut(s) 239, 881, 1191
BseXI GCAGC 2 cut(s) 235, 971
BseYI CCCAGC 2 cut(s) 472, 864
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 1 cut(s) 573
BshFI GGCC 3 cut(s) 159, 410, 842
BshNI GGYRCC 2 cut(s) 1077, 1145
BsiHKAI GWGCWC 3 cut(s) 417, 622, 1042
BsiSI CCGG 4 cut(s) 77, 178, 401, 1149
BslFI GGGAC 2 cut(s) 846, 1059
BslI CCNNNNNNNGG 2 cut(s) 43, 1090
BsmAI GTCTC 1 cut(s) 984
BsmFI GGGAC 2 cut(s) 846, 1059
BsnI GGCC 3 cut(s) 159, 410, 842
Bsp1286I GDGCHC 4 cut(s) 226, 417, 622, 1042
Bsp13I TCCGGA 2 cut(s) 76, 400
Bsp1407I TGTACA 1 cut(s) 981
Bsp143I GATC 6 cut(s) 136, 262, 436, 454, 612, 784
BspACI CCGC 1 cut(s) 94
BspANI GGCC 3 cut(s) 159, 410, 842
BspCNI CTCAG 4 cut(s) 97, 490, 503, 695
BspEI TCCGGA 2 cut(s) 76, 400
BspFNI CGCG 1 cut(s) 573
BspHI TCATGA 1 cut(s) 904
BspLI GGNNCC 3 cut(s) 862, 1079, 1147
BspMI ACCTGC 2 cut(s) 159, 1081
BspPI GGATC 3 cut(s) 144, 431, 779
BspT107I GGYRCC 2 cut(s) 1077, 1145
BsrDI GCAATG 2 cut(s) 366, 954
BsrGI TGTACA 1 cut(s) 981
BsrI ACTGG 3 cut(s) 239, 881, 1191
BssECI CCNNGG 2 cut(s) 1073, 1210
BssMI GATC 6 cut(s) 136, 262, 436, 454, 612, 784
BssSI CACGAG 1 cut(s) 1021
BssT1I CCWWGG 1 cut(s) 1210
Bst2BI CACGAG 1 cut(s) 1021
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 6 cut(s) 55, 202, 581, 593, 986, 1074
Bst6I CTCTTC 1 cut(s) 997
BstAPI GCANNNNNTGC 1 cut(s) 302
BstAUI TGTACA 1 cut(s) 981
BstC8I GCNNGC 5 cut(s) 161, 165, 190, 408, 1155
BstDEI CTNAG 5 cut(s) 66, 105, 490, 498, 682
BstDSI CCRYGG 1 cut(s) 1073
BstF5I GGATG 4 cut(s) 85, 637, 802, 1003
BstFNI CGCG 1 cut(s) 573
BstKTI GATC 6 cut(s) 139, 265, 439, 457, 615, 787
BstMAI GTCTC 1 cut(s) 984
BstMBI GATC 6 cut(s) 136, 262, 436, 454, 612, 784
BstMWI GCNNNNNNNGC 4 cut(s) 160, 302, 412, 1154
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 1157
BstSCI CCNGG 2 cut(s) 154, 1148
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 573
BstV1I GCAGC 2 cut(s) 235, 971
BstX2I RGATCY 4 cut(s) 136, 262, 436, 612
BstYI RGATCY 4 cut(s) 136, 262, 436, 612
BsuRI GGCC 3 cut(s) 159, 410, 842
BtgI CCRYGG 1 cut(s) 1073
BtsCI GGATG 4 cut(s) 85, 637, 802, 1003
BtsIMutI CAGTG 3 cut(s) 198, 991, 1184
BveI ACCTGC 2 cut(s) 159, 1081
Cac8I GCNNGC 5 cut(s) 161, 165, 190, 408, 1155
CaiI CAGNNNCTG 1 cut(s) 497
CciI TCATGA 1 cut(s) 904
Cfr13I GGNCC 3 cut(s) 96, 841, 860
Csp6I GTAC 3 cut(s) 638, 982, 1078
CviAII CATG 5 cut(s) 536, 848, 905, 1065, 1154
CviQI GTAC 3 cut(s) 638, 982, 1078
DdeI CTNAG 5 cut(s) 66, 105, 490, 498, 682
DpnI GATC 6 cut(s) 138, 264, 438, 456, 614, 786
DpnII GATC 6 cut(s) 136, 262, 436, 454, 612, 784
EaeI YGGCCR 2 cut(s) 157, 408
Eam1104I CTCTTC 1 cut(s) 997
EarI CTCTTC 1 cut(s) 997
Ecl136II GAGCTC 1 cut(s) 415
Eco130I CCWWGG 1 cut(s) 1210
Eco24I GRGCYC 2 cut(s) 226, 417
Eco32I GATATC 1 cut(s) 546
Eco47I GGWCC 2 cut(s) 96, 860
Eco53kI GAGCTC 1 cut(s) 415
EcoICRI GAGCTC 1 cut(s) 415
EcoO109I RGGNCCY 1 cut(s) 841
EcoRII CCWGG 1 cut(s) 154
EcoRV GATATC 1 cut(s) 546
EcoT14I CCWWGG 1 cut(s) 1210
EcoT22I ATGCAT 1 cut(s) 307
EcoT38I GRGCYC 2 cut(s) 226, 417
ErhI CCWWGG 1 cut(s) 1210
FaeI CATG 5 cut(s) 539, 851, 908, 1068, 1157
FaqI GGGAC 2 cut(s) 846, 1059
FatI CATG 5 cut(s) 535, 847, 904, 1064, 1153
FauNDI CATATG 1 cut(s) 307
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 2 cut(s) 249, 960
FokI GGATG 4 cut(s) 92, 644, 809, 1010
FriOI GRGCYC 2 cut(s) 226, 417
Fsp4HI GCNGC 2 cut(s) 249, 960
FspBI CTAG 1 cut(s) 84
GluI GCNGC 2 cut(s) 249, 960
GsaI CCCAGC 2 cut(s) 476, 868
GsuI CTGGAG 1 cut(s) 898
HaeIII GGCC 3 cut(s) 159, 410, 842
HapII CCGG 4 cut(s) 77, 178, 401, 1149
Hin1II CATG 5 cut(s) 539, 851, 908, 1068, 1157
HinfI GANTC 5 cut(s) 130, 465, 532, 917, 1217
HpaII CCGG 4 cut(s) 77, 178, 401, 1149
HphI GGTGA 4 cut(s) 605, 707, 1105, 1189
Hpy166II GTNNAC 3 cut(s) 172, 982, 1020
Hpy188I TCNGA 3 cut(s) 493, 550, 1142
Hpy188III TCNNGA 9 cut(s) 77, 134, 401, 482, 794, 807, 871, 905, 1109
Hpy8I GTNNAC 3 cut(s) 172, 982, 1020
HpyAV CCTTC 3 cut(s) 370, 450, 1236
HpyCH4III ACNGT 6 cut(s) 55, 202, 581, 593, 986, 1074
HpyF10VI GCNNNNNNNGC 4 cut(s) 160, 302, 412, 1154
HpyF3I CTNAG 5 cut(s) 66, 105, 490, 498, 682
Hsp92II CATG 5 cut(s) 539, 851, 908, 1068, 1157
Kpn2I TCCGGA 2 cut(s) 76, 400
KpnI GGTACC 1 cut(s) 1081
Kzo9I GATC 6 cut(s) 136, 262, 436, 454, 612, 784
LmnI GCTCC 3 cut(s) 293, 403, 879
Lsp1109I GCAGC 2 cut(s) 235, 971
LweI GCATC 7 cut(s) 70, 292, 484, 699, 714, 750, 891
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 2 cut(s) 142, 196
MalI GATC 6 cut(s) 138, 264, 438, 456, 614, 786
MboI GATC 6 cut(s) 136, 262, 436, 454, 612, 784
MboII GAAGA 3 cut(s) 25, 926, 1014
MflI RGATCY 4 cut(s) 136, 262, 436, 612
MhlI GDGCHC 4 cut(s) 226, 417, 622, 1042
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 5 cut(s) 4, 39, 110, 768, 812
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 3 cut(s) 139, 474, 541
Mox20I TGGCCA 1 cut(s) 159
Mph1103I ATGCAT 1 cut(s) 307
MroI TCCGGA 2 cut(s) 76, 400
MroXI GAANNNNTTC 1 cut(s) 113
MscI TGGCCA 1 cut(s) 159
MseI TTAA 1 cut(s) 288
Msp20I TGGCCA 1 cut(s) 159
MspI CCGG 4 cut(s) 77, 178, 401, 1149
MspR9I CCNGG 2 cut(s) 156, 1150
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 1 cut(s) 573
MwoI GCNNNNNNNGC 4 cut(s) 160, 302, 412, 1154
NciI CCSGG 1 cut(s) 1150
NdeI CATATG 1 cut(s) 307
NdeII GATC 6 cut(s) 136, 262, 436, 454, 612, 784
NlaIII CATG 5 cut(s) 539, 851, 908, 1068, 1157
NlaIV GGNNCC 3 cut(s) 862, 1079, 1147
NmeAIII GCCGAG 1 cut(s) 436
NmuCI GTSAC 2 cut(s) 142, 196
NsiI ATGCAT 1 cut(s) 307
NspI RCATGY 1 cut(s) 1157
PaeI GCATGC 1 cut(s) 1157
PagI TCATGA 1 cut(s) 904
PaqCI CACCTGC 1 cut(s) 1081
PdmI GAANNNNTTC 1 cut(s) 113
PfeI GAWTC 2 cut(s) 917, 1217
PkrI GCNGC 2 cut(s) 250, 961
PleI GAGTC 3 cut(s) 138, 473, 540
PpsI GAGTC 3 cut(s) 138, 473, 540
Psp124BI GAGCTC 1 cut(s) 417
Psp6I CCWGG 1 cut(s) 154
PspFI CCCAGC 2 cut(s) 472, 864
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 3 cut(s) 862, 1079, 1147
PspPI GGNCC 3 cut(s) 96, 841, 860
PstNI CAGNNNCTG 1 cut(s) 497
PsuI RGATCY 4 cut(s) 136, 262, 436, 612
RsaI GTAC 3 cut(s) 639, 983, 1079
RsaNI GTAC 3 cut(s) 638, 982, 1078
SacI GAGCTC 1 cut(s) 417
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 249, 960
Sau3AI GATC 6 cut(s) 136, 262, 436, 454, 612, 784
Sau96I GGNCC 3 cut(s) 96, 841, 860
ScaI AGTACT 1 cut(s) 639
SchI GAGTC 3 cut(s) 139, 474, 541
ScrFI CCNGG 2 cut(s) 156, 1150
SduI GDGCHC 4 cut(s) 226, 417, 622, 1042
SfaNI GCATC 7 cut(s) 70, 292, 484, 699, 714, 750, 891
SfcI CTRYAG 1 cut(s) 168
SinI GGWCC 2 cut(s) 96, 860
SmlI CTYRAG 4 cut(s) 332, 458, 621, 869
SmoI CTYRAG 4 cut(s) 332, 458, 621, 869
SphI GCATGC 1 cut(s) 1157
Sse9I AATT 5 cut(s) 4, 39, 110, 768, 812
SsiI CCGC 1 cut(s) 94
SspI AATATT 1 cut(s) 900
SspMI CTAG 1 cut(s) 84
SstI GAGCTC 1 cut(s) 417
StyD4I CCNGG 2 cut(s) 154, 1148
StyI CCWWGG 1 cut(s) 1210
TaaI ACNGT 6 cut(s) 55, 202, 581, 593, 986, 1074
TaqI TCGA 3 cut(s) 60, 722, 1234
TasI AATT 5 cut(s) 4, 39, 110, 768, 812
TatI WGTACW 2 cut(s) 637, 981
TfiI GAWTC 2 cut(s) 917, 1217
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 3 cut(s) 205, 991, 1191
TseFI GTSAC 2 cut(s) 142, 196
TseI GCWGC 2 cut(s) 248, 959
Tsp45I GTSAC 2 cut(s) 142, 196
TspDTI ATGAA 5 cut(s) 17, 222, 648, 755, 893
TspGWI ACGGA 2 cut(s) 777, 1010
TspRI CASTG 3 cut(s) 205, 991, 1191
VpaK11BI GGWCC 2 cut(s) 96, 860
XapI RAATTY 2 cut(s) 4, 812
XceI RCATGY 1 cut(s) 1157
XcmI CCANNNNNNNNNTGG 1 cut(s) 854
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 113
XspI CTAG 1 cut(s) 84
ZrmI AGTACT 1 cut(s) 639
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.