Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003577

Physical Location & Seq

Genomic Coordinates Forward (+)

58639435 .. 58640667

Gene Structure 1233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0428500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGCTAAGACCTAGCTACATGGAAGCTGAAGCTCATCTTCCCGAGCTGCCAAGTGAAATCATATGCTTCCAAATACTCCCAAGGCTACCGGCCAAGTCCCTAATGCGCTTCAAGTGCGTTTGCAAGTCATGGTTCTCTCTCACTCGCAACCCTTCCTTTCTTAGAGTCCACCGAAACTTGCGCTGCAACAGCAGCAATATGTACACTCACCTCCTGTTACATTTCTACGACGAAACCGCATTGCATGAGCGCTTGCTCTCCCTCCAAATCAACCAAGATGGTAGTCCATCACTCCTCACACATTGTCTAACACTGCCCTACGAATATCGTCTTTACCAAACCTACTCTAGCAACGGCTTGGTACTTCTTAAGCTTGGTAATGCTTTGATTTATGACCACCCCATTCGTATATTTAATCCCTGCACCAGAGAGTCCATTACTCTTCCCCTTCCTAATTTTCCTACACATATAAGCTACCCCTGGTTCCAGATTGTACACCTCTTTGGGTTCAGTCCTCTCACTAATGAGTATAAGGTTCTCCAAGTCCAATATCGCAACTCTTTAGGTGTGCTCATGCTTCAATGTGCAACACAAACTCACTTATCTCTTTATGTATATGATATGAAGAGTAAAATTTTTCGGAGAAGTGAAATCATGTTGCCTGAACGGTTGCGTGGGCATGTTCGATTGGAGTTGCTTGCTACTTATGATGATGAAAACATTGTCTCCTTAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

245

Amino Acids

28.79

Weight (kDa)

8.95

Isoelectric Point (pI)

49.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	14 - 53	3.1e-07	F-box-like
FBA_3	PF08268	84 - 187	2.9e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11080 AT1G11080 AT1G61130 AT4G15100
fragaria_vesca	FvH4_3g04600 FvH4_3g04600 FvH4_3g04600 FvH4_3g04620
malus_domestica	MD05G1322000.v1.1 MD10G1300000.v1.1
prunus_persica	Prupe.4G040800_v2.0.a1 Prupe.4G040800_v2.0.a1
pyrus_communis	pycom05g29630 pycom10g25270
rosa_chinensis	RchiOBHm_Chr5g0007541 RchiOBHm_Chr5g0007551
rosa_laevigata	RLG00000031466 RLG00000031467
rosa_multiflora	Rmu_ssc0000182.1_g000013
rosa_roxburghii	Rroxscaffold_1G00068870 Rroxscaffold_1G00068880
rosa_rugosa	Rorug04G0428200 Rorug04G0428300 Rorug04G0428400 Rorug04G0428500
rosa_samantha	Rh5AG055900 Rh5AG056100 Rh5BG053600 Rh5BG053700 Rh5CG063400 Rh5CG063500 Rh5DG052600 Rh5DG052700
rosa_wichuraiana	Rw5G005400 Rw5G005410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	237
AcoI	YGGCCR	1 cut(s)	90
AcsI	RAATTY	1 cut(s)	633
AcuI	CTGAAG	1 cut(s)	48
AfaI	GTAC	3 cut(s)	203, 363, 495
AfeI	AGCGCT	1 cut(s)	251
AflII	CTTAAG	2 cut(s)	368, 730
AgsI	TTSAA	2 cut(s)	112, 581
AjnI	CCWGG	1 cut(s)	479
AluBI	AGCT	6 cut(s)	15, 26, 32, 46, 373, 474
AluI	AGCT	6 cut(s)	15, 26, 32, 46, 373, 474
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	1 cut(s)	730
Ama87I	CYCGRG	1 cut(s)	41
Aor51HI	AGCGCT	1 cut(s)	251
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	3 cut(s)	46, 183, 192
ApoI	RAATTY	1 cut(s)	633
AspLEI	GCGC	3 cut(s)	108, 183, 252
AsuHPI	GGTGA	1 cut(s)	200
AvaI	CYCGRG	1 cut(s)	41
Bbv12I	GWGCWC	1 cut(s)	573
BbvI	GCAGC	3 cut(s)	33, 170, 204
BccI	CCATC	2 cut(s)	272, 295
BceAI	ACGGC	1 cut(s)	370
BciT130I	CCWGG	1 cut(s)	481
BcoDI	GTCTC	1 cut(s)	730
BfaI	CTAG	2 cut(s)	12, 348
BfoI	RGCGCY	1 cut(s)	253
BfrI	CTTAAG	2 cut(s)	368, 730
BisI	GCNGC	3 cut(s)	47, 184, 193
BlsI	GCNGC	3 cut(s)	48, 185, 194
Bme1390I	CCNGG	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	485
BmrFI	CCNGG	1 cut(s)	481
BsaJI	CCNNGG	2 cut(s)	80, 479
BsaXI	ACNNNNNCTCC	1 cut(s)	710
Bse118I	RCCGGY	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	481
BseDI	CCNNGG	2 cut(s)	80, 479
BseMI	GCAATG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	3 cut(s)	33, 170, 204
BsgI	GTGCAG	1 cut(s)	406
BshFI	GGCC	1 cut(s)	92
BsiHKAI	GWGCWC	1 cut(s)	573
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	730
BsmFI	GGGAC	1 cut(s)	82
BsnI	GGCC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	41
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp1407I	TGTACA	2 cut(s)	201, 493
BspACI	CCGC	1 cut(s)	237
BspANI	GGCC	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	485
BspTI	CTTAAG	2 cut(s)	368, 730
BsrDI	GCAATG	1 cut(s)	239
BsrFI	RCCGGY	1 cut(s)	88
BsrGI	TGTACA	2 cut(s)	201, 493
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	80, 479
BssT1I	CCWWGG	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	1 cut(s)	669
Bst6I	CTCTTC	2 cut(s)	447, 620
BstAFI	CTTAAG	2 cut(s)	368, 730
BstAUI	TGTACA	2 cut(s)	201, 493
BstC8I	GCNNGC	2 cut(s)	254, 699
BstDEI	CTNAG	2 cut(s)	5, 161
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	3 cut(s)	108, 183, 252
BstMAI	GTCTC	1 cut(s)	730
BstMWI	GCNNNNNNNGC	3 cut(s)	114, 189, 192
BstNI	CCWGG	1 cut(s)	481
BstNSI	RCATGY	1 cut(s)	683
BstSCI	CCNGG	1 cut(s)	479
BstV1I	GCAGC	3 cut(s)	33, 170, 204
BsuRI	GGCC	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	311
BtsIMutI	CAGTG	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	254, 699
CfoI	GCGC	3 cut(s)	108, 183, 252
Cfr10I	RCCGGY	1 cut(s)	88
Csp6I	GTAC	3 cut(s)	202, 362, 494
CviAII	CATG	6 cut(s)	19, 129, 245, 574, 655, 680
CviJI	RGCY	9 cut(s)	15, 26, 32, 46, 85, 92, 357, 373, 474
CviKI_1	RGCY	9 cut(s)	15, 26, 32, 46, 85, 92, 357, 373, 474
CviQI	GTAC	3 cut(s)	202, 362, 494
DdeI	CTNAG	2 cut(s)	5, 161
EaeI	YGGCCR	1 cut(s)	90
Eam1104I	CTCTTC	2 cut(s)	447, 620
EarI	CTCTTC	2 cut(s)	447, 620
Eco130I	CCWWGG	1 cut(s)	80
Eco47III	AGCGCT	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	41
EcoRII	CCWGG	1 cut(s)	479
EcoT14I	CCWWGG	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	80
FaeI	CATG	6 cut(s)	22, 132, 248, 577, 658, 683
FalI	AAGNNNNNCTT	2 cut(s)	21, 53
FaqI	GGGAC	1 cut(s)	82
FatI	CATG	6 cut(s)	18, 128, 244, 573, 654, 679
FauNDI	CATATG	1 cut(s)	62
Fnu4HI	GCNGC	3 cut(s)	47, 184, 193
Fsp4HI	GCNGC	3 cut(s)	47, 184, 193
FspBI	CTAG	2 cut(s)	12, 348
GlaI	GCGC	3 cut(s)	107, 182, 251
GluI	GCNGC	3 cut(s)	47, 184, 193
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	1 cut(s)	89
HhaI	GCGC	3 cut(s)	108, 183, 252
Hin1II	CATG	6 cut(s)	22, 132, 248, 577, 658, 683
Hin6I	GCGC	3 cut(s)	106, 181, 250
HinP1I	GCGC	3 cut(s)	106, 181, 250
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	2 cut(s)	165, 431
HpaII	CCGG	1 cut(s)	89
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	3 cut(s)	169, 204, 496
Hpy188I	TCNGA	1 cut(s)	642
Hpy188III	TCNNGA	2 cut(s)	41, 487
Hpy8I	GTNNAC	3 cut(s)	169, 204, 496
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	162, 458
HpyCH4III	ACNGT	1 cut(s)	669
HpyCH4V	TGCA	5 cut(s)	123, 186, 244, 423, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	114, 189, 192
HpyF3I	CTNAG	2 cut(s)	5, 161
Hsp92II	CATG	6 cut(s)	22, 132, 248, 577, 658, 683
HspAI	GCGC	3 cut(s)	106, 181, 250
LpnPI	CCDG	8 cut(s)	102, 227, 433, 439, 466, 493, 500, 675
Lsp1109I	GCAGC	3 cut(s)	33, 170, 204
MaeI	CTAG	2 cut(s)	12, 348
MaeIII	GTNAC	1 cut(s)	216
MboII	GAAGA	3 cut(s)	29, 434, 637
MhlI	GDGCHC	1 cut(s)	573
MluCI	AATT	2 cut(s)	454, 633
MlyI	GAGTC	2 cut(s)	174, 440
MnlI	CCTC	5 cut(s)	221, 272, 305, 509, 525
MseI	TTAA	3 cut(s)	369, 414, 731
MspCI	CTTAAG	2 cut(s)	368, 730
MspI	CCGG	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	481
MwoI	GCNNNNNNNGC	3 cut(s)	114, 189, 192
NdeI	CATATG	1 cut(s)	62
NlaIII	CATG	6 cut(s)	22, 132, 248, 577, 658, 683
NlaIV	GGNNCC	1 cut(s)	485
NspI	RCATGY	1 cut(s)	683
PkrI	GCNGC	3 cut(s)	48, 185, 194
PleI	GAGTC	2 cut(s)	173, 439
PpsI	GAGTC	2 cut(s)	173, 439
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	1 cut(s)	485
RsaI	GTAC	3 cut(s)	203, 363, 495
RsaNI	GTAC	3 cut(s)	202, 362, 494
SaqAI	TTAA	3 cut(s)	369, 414, 731
SatI	GCNGC	3 cut(s)	47, 184, 193
SchI	GAGTC	2 cut(s)	174, 440
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	1 cut(s)	573
SmlI	CTYRAG	2 cut(s)	368, 730
SmoI	CTYRAG	2 cut(s)	368, 730
Sse9I	AATT	2 cut(s)	454, 633
SsiI	CCGC	1 cut(s)	237
SspMI	CTAG	2 cut(s)	12, 348
StyD4I	CCNGG	1 cut(s)	479
StyI	CCWWGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	669
TaqI	TCGA	1 cut(s)	685
TasI	AATT	2 cut(s)	454, 633
TatI	WGTACW	2 cut(s)	201, 493
Tru1I	TTAA	3 cut(s)	369, 414, 731
Tru9I	TTAA	3 cut(s)	369, 414, 731
TscAI	CASTG	1 cut(s)	318
TseI	GCWGC	3 cut(s)	46, 183, 192
TspDTI	ATGAA	2 cut(s)	638, 729
TspRI	CASTG	1 cut(s)	318
Vha464I	CTTAAG	2 cut(s)	368, 730
XapI	RAATTY	1 cut(s)	633
XceI	RCATGY	1 cut(s)	683
XspI	CTAG	2 cut(s)	12, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.