RchiOBHm_Chr5g0007551

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
4760209 .. 4762949
2741 bp
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UTR
Exon/CDS
Intron
PRQ28859

Sequence Viewer

Length: 1296 bp
ATGAATATGATGGAGTTCGTAGTAAAAGCGACAGCCTTCTTCTTCATTCTGGCAACTATTGTGGAGCCTCAGCCTGTTTTGGGATCTAGAAGAATATTGCAACAACAGACTGGGATTAGTACTAGTAGTGATGATGATCTTGTGACCAACTTGCCTGGCCAGCCTGCCGTAGACTTCAAGCACTATGCCGGCTATGTCACTGTGAACGAAACAAAAGGACGGGCACTCTTTTACTGGTTCTTTGAGGCTGCTACCACTCCAGATCAAAAACCTCTTGTTTTGTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCCAGCCAAGAGATTGGTCCATTCCTATTGGACATTAAGAGCCAGGGACTCATATTTAATAACTACTCATGGAATAAAGAGGCCAACGTGCTATTCGTGGAATCTCCGATTGGGGTTGGCTTTTCATACACCAACACAACTTCTGATTTTGATAAGCTAGGAGATAACTTCACAGGCAAGTCACTAAAAGAAATGGGTAATCCTGAAACAGATGATGCTGAGGATTGGAGAGGTCTGGTGGATTATGCTTGGAGTCATGCTGTGGTTTCGGACGAAACTCACAAATTAATAAGCGAGTACTGTGATTTCCACAGTAATGATACTTGGGAAAATAAAAATTGTACACAAGGTGTGGATGAAGTATTTAAACAGTACAAGGAGATAGATATATACAGCCTTTACACCCCGGCCTGCACTACAAATGATATAGCAACTTCTAATACTGCTGATTCTAAAGTTCAAGTCATGACGATGAAGCACACATCTACAATGATACCAAGGATTATGGGAGGCTATGATGCATGTCTGGATGGTTATTCGAAAAAATTCTTCAACAGAGCAGATGTGCAAAAGGCCCTCCATGCCAGTGATGGTCTCCAGCTCAAGAACTGGAGCATCTGCAATAATCAAATATTTACCAATTGGTCAGATTCAAAGCCATCTCTTCTTCCCATATACAAGAAACTCATTGCAGCAGGACTAAGAATATGGTTGTACAGTGGAGACACGGATGGAAGAGTACCTGTGCTGTCCACAAGATATAGCTTAGGTGCTCTAGGGCTGCCTATTACAAAGACATGGAGACCTTGGTACCATCAGAAGCAGGTGAGTGGTTGGTATCAAGAATATGAGGGGCTTACATATGCAACAGTTAGAGGAGCTGGGCATGATGTTCCCTCCTTCAAACCAGCAGAGTCATTGGTTCTATTCACATCTTTTCTCCTTGGGGAATCTCCGCCTTCGACTCGATGA

Protein Analysis

431

Amino Acids

48.2

Weight (kDa)

5.34

Isoelectric Point (pI)

30.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 52 - 169 4.2e-48 Serine carboxypeptidase
Peptidase_S10 PF00450 173 - 423 2.4e-57 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1138
Acc36I ACCTGC 1 cut(s) 1138
Acc65I GGTACC 1 cut(s) 1134
AccB1I GGYRCC 1 cut(s) 1134
AccI GTMKAC 1 cut(s) 171
AciI CCGC 1 cut(s) 1280
AclWI GGATC 1 cut(s) 91
AcoI YGGCCR 1 cut(s) 157
AcsI RAATTY 1 cut(s) 869
AdeI CACNNNGTG 1 cut(s) 674
AfaI GTAC 7 cut(s) 121, 623, 667, 698, 1040, 1065, 1136
AfiI CCNNNNNNNGG 1 cut(s) 80
AgsI TTSAA 5 cut(s) 178, 785, 877, 978, 1228
AhlI ACTAGT 1 cut(s) 122
AjnI CCWGG 3 cut(s) 154, 298, 366
AjuI GAANNNNNNNTTGG 4 cut(s) 401, 417, 433, 449
AluBI AGCT 4 cut(s) 481, 925, 1089, 1205
AluI AGCT 4 cut(s) 481, 925, 1089, 1205
Alw21I GWGCWC 2 cut(s) 308, 1099
Alw26I GTCTC 3 cut(s) 923, 1041, 1120
AlwI GGATC 1 cut(s) 91
AoxI GGCC 4 cut(s) 157, 405, 732, 897
ApeKI GCWGC 3 cut(s) 248, 1016, 1105
ApoI RAATTY 1 cut(s) 869
AseI ATTAAT 1 cut(s) 611
Asp700I GAANNNNTTC 1 cut(s) 869
Asp718I GGTACC 1 cut(s) 1134
AspS9I GGNCC 3 cut(s) 296, 341, 898
AsuC2I CCSGG 1 cut(s) 731
AsuHPI GGTGA 1 cut(s) 1162
AsuII TTCGAA 1 cut(s) 863
AvaII GGWCC 2 cut(s) 296, 341
BaeGI GKGCMC 1 cut(s) 226
BaeI ACNNNNGTAYC 2 cut(s) 1118, 1151
BalI TGGCCA 1 cut(s) 159
BanI GGYRCC 1 cut(s) 1134
Bbv12I GWGCWC 2 cut(s) 308, 1099
BbvCI CCTCAGC 2 cut(s) 69, 543
BbvI GCAGC 3 cut(s) 235, 1028, 1092
BccI CCATC 6 cut(s) 4, 848, 908, 991, 1049, 1146
BceAI ACGGC 1 cut(s) 152
BciT130I CCWGG 3 cut(s) 156, 300, 368
BcnI CCSGG 1 cut(s) 731
BcoDI GTCTC 3 cut(s) 923, 1041, 1120
BcuI ACTAGT 1 cut(s) 122
BfaI CTAG 4 cut(s) 87, 123, 482, 1100
BfuAI ACCTGC 1 cut(s) 1138
BisI GCNGC 3 cut(s) 249, 1017, 1106
BlsI GCNGC 3 cut(s) 250, 1018, 1107
BmcAI AGTACT 2 cut(s) 121, 623
Bme1390I CCNGG 4 cut(s) 156, 300, 368, 731
Bme18I GGWCC 2 cut(s) 296, 341
BmgT120I GGNCC 3 cut(s) 296, 341, 898
BmiI GGNNCC 3 cut(s) 66, 325, 1136
BmrFI CCNGG 4 cut(s) 156, 300, 368, 731
BmrI ACTGGG 1 cut(s) 120
BmsI GCATC 3 cut(s) 529, 832, 948
BmuI ACTGGG 1 cut(s) 120
BpmI CTGGAG 3 cut(s) 243, 905, 955
Bpu10I CCTNAGC 3 cut(s) 69, 543, 1090
Bpu14I TTCGAA 1 cut(s) 863
BpuEI CTTGAG 1 cut(s) 911
BpuMI CCSGG 1 cut(s) 731
BsaBI GATNNNNATC 1 cut(s) 135
BsaI GGTCTC 2 cut(s) 923, 1120
BsaJI CCNNGG 6 cut(s) 299, 367, 729, 821, 1130, 1267
Bsc4I CCNNNNNNNGG 1 cut(s) 80
Bse118I RCCGGY 1 cut(s) 188
Bse1I ACTGG 4 cut(s) 115, 239, 909, 938
Bse3DI GCAATG 1 cut(s) 1011
Bse8I GATNNNNATC 1 cut(s) 135
BseBI CCWGG 3 cut(s) 156, 300, 368
BseDI CCNNGG 6 cut(s) 299, 367, 729, 821, 1130, 1267
BseGI GGATG 3 cut(s) 685, 859, 1060
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 80
BseMI GCAATG 1 cut(s) 1011
BseMII CTCAG 2 cut(s) 83, 534
BseNI ACTGG 4 cut(s) 115, 239, 909, 938
BseRI GAGGAG 1 cut(s) 1215
BseSI GKGCMC 1 cut(s) 226
BseXI GCAGC 3 cut(s) 235, 1028, 1092
BseYI CCCAGC 1 cut(s) 1205
BsgI GTGCAG 1 cut(s) 721
BshFI GGCC 4 cut(s) 159, 407, 734, 899
BshNI GGYRCC 1 cut(s) 1134
BsiHKAI GWGCWC 2 cut(s) 308, 1099
BsiSI CCGG 2 cut(s) 189, 731
BslFI GGGAC 1 cut(s) 384
BslI CCNNNNNNNGG 1 cut(s) 80
BsmAI GTCTC 3 cut(s) 923, 1041, 1120
BsmFI GGGAC 1 cut(s) 384
BsnI GGCC 4 cut(s) 159, 407, 734, 899
Bso31I GGTCTC 2 cut(s) 923, 1120
Bsp119I TTCGAA 1 cut(s) 863
Bsp1286I GDGCHC 3 cut(s) 226, 308, 1099
Bsp1407I TGTACA 2 cut(s) 665, 1038
Bsp143I GATC 3 cut(s) 83, 136, 262
BspACI CCGC 1 cut(s) 1280
BspANI GGCC 4 cut(s) 159, 407, 734, 899
BspCNI CTCAG 2 cut(s) 82, 535
BspHI TCATGA 1 cut(s) 789
BspLI GGNNCC 3 cut(s) 66, 325, 1136
BspMI ACCTGC 1 cut(s) 1138
BspPI GGATC 1 cut(s) 91
BspQI GCTCTTC 1 cut(s) 313
BspT104I TTCGAA 1 cut(s) 863
BspT107I GGYRCC 1 cut(s) 1134
BspTNI GGTCTC 2 cut(s) 923, 1120
BsrDI GCAATG 1 cut(s) 1011
BsrFI RCCGGY 1 cut(s) 188
BsrGI TGTACA 2 cut(s) 665, 1038
BsrI ACTGG 4 cut(s) 115, 239, 909, 938
BssAI RCCGGY 1 cut(s) 188
BssECI CCNNGG 6 cut(s) 299, 367, 729, 821, 1130, 1267
BssMI GATC 3 cut(s) 83, 136, 262
BssT1I CCWWGG 3 cut(s) 821, 1130, 1267
Bst2UI CCWGG 3 cut(s) 156, 300, 368
Bst4CI ACNGT 6 cut(s) 202, 626, 638, 696, 1043, 1195
Bst6I CTCTTC 3 cut(s) 313, 993, 1054
BstAUI TGTACA 2 cut(s) 665, 1038
BstBI TTCGAA 1 cut(s) 863
BstC8I GCNNGC 5 cut(s) 161, 165, 190, 328, 736
BstDEI CTNAG 4 cut(s) 69, 543, 1025, 1090
BstF5I GGATG 3 cut(s) 685, 859, 1060
BstKTI GATC 3 cut(s) 86, 139, 265
BstMAI GTCTC 3 cut(s) 923, 1041, 1120
BstMBI GATC 3 cut(s) 83, 136, 262
BstMWI GCNNNNNNNGC 2 cut(s) 160, 905
BstNI CCWGG 3 cut(s) 156, 300, 368
BstNSI RCATGY 1 cut(s) 849
BstSCI CCNGG 4 cut(s) 154, 298, 366, 729
BstSLI GKGCMC 1 cut(s) 226
BstV1I GCAGC 3 cut(s) 235, 1028, 1092
BstX2I RGATCY 1 cut(s) 83
BstXI CCANNNNNNTGG 1 cut(s) 338
BstYI RGATCY 1 cut(s) 83
BsuRI GGCC 4 cut(s) 159, 407, 734, 899
BtsCI GGATG 3 cut(s) 685, 859, 1060
BtsIMutI CAGTG 3 cut(s) 198, 916, 1048
BveI ACCTGC 1 cut(s) 1138
Cac8I GCNNGC 5 cut(s) 161, 165, 190, 328, 736
CciI TCATGA 1 cut(s) 789
Cfr10I RCCGGY 1 cut(s) 188
Cfr13I GGNCC 3 cut(s) 296, 341, 898
Csp6I GTAC 7 cut(s) 120, 622, 666, 697, 1039, 1064, 1135
CspCI CAANNNNNGTGG 2 cut(s) 42, 77
CviAII CATG 7 cut(s) 393, 581, 790, 846, 905, 1122, 1211
CviQI GTAC 7 cut(s) 120, 622, 666, 697, 1039, 1064, 1135
DdeI CTNAG 4 cut(s) 69, 543, 1025, 1090
DpnI GATC 3 cut(s) 85, 138, 264
DpnII GATC 3 cut(s) 83, 136, 262
DraI TTTAAA 1 cut(s) 691
DraIII CACNNNGTG 1 cut(s) 674
EaeI YGGCCR 1 cut(s) 157
Eam1104I CTCTTC 3 cut(s) 313, 993, 1054
EarI CTCTTC 3 cut(s) 313, 993, 1054
EciI GGCGGA 1 cut(s) 1269
Eco130I CCWWGG 3 cut(s) 821, 1130, 1267
Eco31I GGTCTC 2 cut(s) 923, 1120
Eco47I GGWCC 2 cut(s) 296, 341
EcoO109I RGGNCCY 2 cut(s) 296, 898
EcoRII CCWGG 3 cut(s) 154, 298, 366
EcoT14I CCWWGG 3 cut(s) 821, 1130, 1267
EcoT22I ATGCAT 1 cut(s) 847
ErhI CCWWGG 3 cut(s) 821, 1130, 1267
FaeI CATG 7 cut(s) 396, 584, 793, 849, 908, 1125, 1214
FaqI GGGAC 1 cut(s) 384
FatI CATG 7 cut(s) 392, 580, 789, 845, 904, 1121, 1210
FauNDI CATATG 1 cut(s) 1186
FblI GTMKAC 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 249, 1017, 1106
FokI GGATG 3 cut(s) 692, 866, 1067
Fsp4HI GCNGC 3 cut(s) 249, 1017, 1106
FspBI CTAG 4 cut(s) 87, 123, 482, 1100
GluI GCNGC 3 cut(s) 249, 1017, 1106
GsaI CCCAGC 1 cut(s) 1209
GsuI CTGGAG 3 cut(s) 243, 905, 955
HaeIII GGCC 4 cut(s) 159, 407, 734, 899
HapII CCGG 2 cut(s) 189, 731
Hin1II CATG 7 cut(s) 396, 584, 793, 849, 908, 1125, 1214
HinfI GANTC 8 cut(s) 372, 425, 577, 773, 974, 1238, 1274, 1288
HpaII CCGG 2 cut(s) 189, 731
HphI GGTGA 1 cut(s) 1162
Hpy166II GTNNAC 4 cut(s) 172, 205, 668, 1077
Hpy188I TCNGA 5 cut(s) 432, 469, 595, 973, 1143
Hpy188III TCNNGA 7 cut(s) 87, 260, 527, 790, 851, 928, 1166
Hpy8I GTNNAC 4 cut(s) 172, 205, 668, 1077
HpyAV CCTTC 3 cut(s) 46, 1234, 1293
HpyCH4III ACNGT 6 cut(s) 202, 626, 638, 696, 1043, 1195
HpyCH4IV ACGT 1 cut(s) 411
HpyCH4V TGCA 7 cut(s) 100, 738, 845, 892, 945, 1016, 1190
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 905
HpyF3I CTNAG 4 cut(s) 69, 543, 1025, 1090
HpySE526I ACGT 1 cut(s) 411
Hsp92II CATG 7 cut(s) 396, 584, 793, 849, 908, 1125, 1214
KpnI GGTACC 1 cut(s) 1138
KroI GCCGGC 1 cut(s) 188
KroNI GCCGGC 1 cut(s) 190
Kzo9I GATC 3 cut(s) 83, 136, 262
LguI GCTCTTC 1 cut(s) 313
LmnI GCTCC 4 cut(s) 64, 323, 936, 1202
Lsp1109I GCAGC 3 cut(s) 235, 1028, 1092
LweI GCATC 3 cut(s) 529, 832, 948
MaeI CTAG 4 cut(s) 87, 123, 482, 1100
MaeII ACGT 1 cut(s) 411
MaeIII GTNAC 3 cut(s) 142, 196, 504
MalI GATC 3 cut(s) 85, 138, 264
MboI GATC 3 cut(s) 83, 136, 262
MboII GAAGA 8 cut(s) 31, 34, 102, 300, 865, 980, 983, 1071
MfeI CAATTG 1 cut(s) 964
MflI RGATCY 1 cut(s) 83
MhlI GDGCHC 3 cut(s) 226, 308, 1099
MlsI TGGCCA 1 cut(s) 159
MluCI AATT 4 cut(s) 608, 661, 869, 964
MluNI TGGCCA 1 cut(s) 159
MlyI GAGTC 4 cut(s) 366, 586, 1247, 1282
Mox20I TGGCCA 1 cut(s) 159
Mph1103I ATGCAT 1 cut(s) 847
MroNI GCCGGC 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 869
MscI TGGCCA 1 cut(s) 159
MseI TTAA 5 cut(s) 288, 360, 381, 611, 690
MslI CAYNNNNRTG 3 cut(s) 639, 794, 909
Msp20I TGGCCA 1 cut(s) 159
MspI CCGG 2 cut(s) 189, 731
MspR9I CCNGG 4 cut(s) 156, 300, 368, 731
MunI CAATTG 1 cut(s) 964
MvaI CCWGG 3 cut(s) 156, 300, 368
MwoI GCNNNNNNNGC 2 cut(s) 160, 905
NaeI GCCGGC 1 cut(s) 190
NciI CCSGG 1 cut(s) 731
NdeI CATATG 1 cut(s) 1186
NdeII GATC 3 cut(s) 83, 136, 262
NgoMIV GCCGGC 1 cut(s) 188
NlaIII CATG 7 cut(s) 396, 584, 793, 849, 908, 1125, 1214
NlaIV GGNNCC 3 cut(s) 66, 325, 1136
NmuCI GTSAC 3 cut(s) 142, 196, 504
NsiI ATGCAT 1 cut(s) 847
NspI RCATGY 1 cut(s) 849
NspV TTCGAA 1 cut(s) 863
PagI TCATGA 1 cut(s) 789
PaqCI CACCTGC 1 cut(s) 1138
PciSI GCTCTTC 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 417
PdiI GCCGGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 869
PfeI GAWTC 4 cut(s) 425, 773, 974, 1274
PkrI GCNGC 3 cut(s) 250, 1018, 1107
PleI GAGTC 4 cut(s) 366, 585, 1246, 1282
PpsI GAGTC 4 cut(s) 366, 585, 1246, 1282
PpuMI RGGWCCY 1 cut(s) 296
PshBI ATTAAT 1 cut(s) 611
Psp5II RGGWCCY 1 cut(s) 296
Psp6I CCWGG 3 cut(s) 154, 298, 366
PspFI CCCAGC 1 cut(s) 1205
PspGI CCWGG 3 cut(s) 154, 298, 366
PspN4I GGNNCC 3 cut(s) 66, 325, 1136
PspPI GGNCC 3 cut(s) 296, 341, 898
PspPPI RGGWCCY 1 cut(s) 296
PsuI RGATCY 1 cut(s) 83
RsaI GTAC 7 cut(s) 121, 623, 667, 698, 1040, 1065, 1136
RsaNI GTAC 7 cut(s) 120, 622, 666, 697, 1039, 1064, 1135
RseI CAYNNNNRTG 3 cut(s) 639, 794, 909
SapI GCTCTTC 1 cut(s) 313
SaqAI TTAA 5 cut(s) 288, 360, 381, 611, 690
SatI GCNGC 3 cut(s) 249, 1017, 1106
Sau3AI GATC 3 cut(s) 83, 136, 262
Sau96I GGNCC 3 cut(s) 296, 341, 898
ScaI AGTACT 2 cut(s) 121, 623
SchI GAGTC 4 cut(s) 366, 586, 1247, 1282
ScrFI CCNGG 4 cut(s) 156, 300, 368, 731
SduI GDGCHC 3 cut(s) 226, 308, 1099
SfaNI GCATC 3 cut(s) 529, 832, 948
SfuI TTCGAA 1 cut(s) 863
SinI GGWCC 2 cut(s) 296, 341
SmiMI CAYNNNNRTG 3 cut(s) 639, 794, 909
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
SpeI ACTAGT 1 cut(s) 122
Sse9I AATT 4 cut(s) 608, 661, 869, 964
SsiI CCGC 1 cut(s) 1280
SspI AATATT 2 cut(s) 96, 957
SspMI CTAG 4 cut(s) 87, 123, 482, 1100
StyD4I CCNGG 4 cut(s) 154, 298, 366, 729
StyI CCWWGG 3 cut(s) 821, 1130, 1267
TaaI ACNGT 6 cut(s) 202, 626, 638, 696, 1043, 1195
TaiI ACGT 1 cut(s) 414
TaqI TCGA 3 cut(s) 863, 1286, 1291
TasI AATT 4 cut(s) 608, 661, 869, 964
TatI WGTACW 5 cut(s) 119, 621, 665, 696, 1038
TfiI GAWTC 4 cut(s) 425, 773, 974, 1274
Tru1I TTAA 5 cut(s) 288, 360, 381, 611, 690
Tru9I TTAA 5 cut(s) 288, 360, 381, 611, 690
TscAI CASTG 3 cut(s) 205, 916, 1048
TseFI GTSAC 3 cut(s) 142, 196, 504
TseI GCWGC 3 cut(s) 248, 1016, 1105
Tsp45I GTSAC 3 cut(s) 142, 196, 504
TspDTI ATGAA 5 cut(s) 17, 34, 438, 696, 812
TspGWI ACGGA 1 cut(s) 1067
TspRI CASTG 3 cut(s) 205, 916, 1048
VpaK11BI GGWCC 2 cut(s) 296, 341
VspI ATTAAT 1 cut(s) 611
XapI RAATTY 1 cut(s) 869
XbaI TCTAGA 1 cut(s) 86
XceI RCATGY 1 cut(s) 849
XcmI CCANNNNNNNNNTGG 1 cut(s) 911
XmiI GTMKAC 1 cut(s) 171
XmnI GAANNNNTTC 1 cut(s) 869
XspI CTAG 4 cut(s) 87, 123, 482, 1100
ZrmI AGTACT 2 cut(s) 121, 623
Zsp2I ATGCAT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.