Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003577

Physical Location & Seq

Genomic Coordinates Forward (+)

4274990 .. 4278391

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG053600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCTGTTCTTGGAATCTCCAGTTGGGGTTGGCTTTTCATACTCCAATACAACTACTGATTATGATAATCTCGGAGATGCCTTTACAGCAAATGATGCATATGCGTTTCTGCACAAGTGGTTTCTCAAGTTCCCATCATACAGAACAAGAACCTTCTACATTGCAGGGGAGAGTTATGCAGGAAAATATGTTCCGGAGCTGGCCGAGCTCATCAATGACAAGAATACAGATCCTTCCCTCCATATTGATCTCAAGGGAGTCCTGCTGGGTAATCCTGAAACCTCAGATGCTGAGGATTGGAGAGGTATAGTGGATTATGCTTGGAGTCATGCTGTGATATCAGACGAAACTCACAAAGTTATACGCGAAAACTGTGATTTTGACGGTGATACTTGGAGTAATAAGATCTGTGCTCAAGCTGTGGATGAAGTACTAAAACAATACAAGGAGATAGACATTTACAGCCTTTATACCTCAATCTGCATCGGTGATACAGCAAGTTCAAATGATGGTTCGATGCAAGTAATGATGATGAAGCACACATCTACAATGATGCCAAGAATTATGGGTGGCTATGATCCGTGTCTGGATGATTATTCAAGAAAATTCTATAACAGAGCAGATGTGCAAAAGGCCCTCCATGTTAGTAATGGTCCCCAGCTCAAGAACTGGAGCATCTGCAGTACCAAAATATTTCATGAGTGGGTTGATTCAAAGCCATCTGTTCTTCCTATATACAAGAAACTCATTGCAGCAGGAATGAGAATATGGGTGTACAGTGGAGACACGGATGGAAGAGTTCCTGTGCTGTCCACGAGATATAGCATAAGTGCTCTGGGACTGCCTATTACAAAAGCATGGACACCGTGGTACCACCAAAAGCAGGTGAGTGGGTGGTTTCAAGAATATAAGGGGCTTACATTTGCAACATTCAGAGGAGCCGGGCATGCAGTTCCGTGCTTCAAACCAAGCAACTCACTGGCTTTATTCACCTCTTTTCTCCTTGGGGAATCTCTGCCTTCTGCTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

343

Amino Acids

38.67

Weight (kDa)

5.99

Isoelectric Point (pI)

24.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	1 - 335	1.1e-98	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11080 AT1G11080 AT1G61130 AT4G15100
fragaria_vesca	FvH4_3g04600 FvH4_3g04600 FvH4_3g04600 FvH4_3g04620
malus_domestica	MD05G1322000.v1.1 MD10G1300000.v1.1
prunus_persica	Prupe.4G040800_v2.0.a1 Prupe.4G040800_v2.0.a1
pyrus_communis	pycom05g29630 pycom10g25270
rosa_chinensis	RchiOBHm_Chr5g0007541 RchiOBHm_Chr5g0007551
rosa_laevigata	RLG00000031466 RLG00000031467
rosa_multiflora	Rmu_ssc0000182.1_g000013
rosa_roxburghii	Rroxscaffold_1G00068870 Rroxscaffold_1G00068880
rosa_rugosa	Rorug04G0428200 Rorug04G0428300 Rorug04G0428400 Rorug04G0428500
rosa_samantha	Rh5AG055900 Rh5AG056100 Rh5BG053600 Rh5BG053700 Rh5CG063400 Rh5CG063500 Rh5DG052600 Rh5DG052700
rosa_wichuraiana	Rw5G005400 Rw5G005410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	874
Acc36I	ACCTGC	1 cut(s)	874
Acc65I	GGTACC	1 cut(s)	870
AccB1I	GGYRCC	1 cut(s)	870
AccII	CGCG	1 cut(s)	366
AccIII	TCCGGA	1 cut(s)	193
AclWI	GGATC	2 cut(s)	224, 572
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	1 cut(s)	605
AfaI	GTAC	4 cut(s)	432, 685, 776, 872
AfiI	CCNNNNNNNGG	1 cut(s)	883
AgsI	TTSAA	5 cut(s)	504, 600, 714, 902, 964
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AloI	GAACNNNNNNTCC	2 cut(s)	174, 206
AluBI	AGCT	4 cut(s)	199, 208, 419, 661
AluI	AGCT	4 cut(s)	199, 208, 419, 661
Alw21I	GWGCWC	3 cut(s)	210, 415, 835
Alw26I	GTCTC	1 cut(s)	777
AlwI	GGATC	2 cut(s)	224, 572
AlwNI	CAGNNNCTG	1 cut(s)	290
Aor13HI	TCCGGA	1 cut(s)	193
AoxI	GGCC	2 cut(s)	201, 633
ApeKI	GCWGC	1 cut(s)	752
ApoI	RAATTY	1 cut(s)	605
Asp718I	GGTACC	1 cut(s)	870
AspS9I	GGNCC	2 cut(s)	634, 653
AsuC2I	CCSGG	1 cut(s)	943
AsuHPI	GGTGA	4 cut(s)	398, 500, 898, 982
AvaII	GGWCC	1 cut(s)	653
BaeI	ACNNNNGTAYC	2 cut(s)	854, 887
BanI	GGYRCC	1 cut(s)	870
BanII	GRGCYC	1 cut(s)	210
BauI	CACGAG	1 cut(s)	814
Bbv12I	GWGCWC	3 cut(s)	210, 415, 835
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	1 cut(s)	764
BccI	CCATC	4 cut(s)	142, 503, 727, 785
BcnI	CCSGG	1 cut(s)	943
BcoDI	GTCTC	1 cut(s)	777
BfmI	CTRYAG	1 cut(s)	679
BfuAI	ACCTGC	1 cut(s)	874
BglII	AGATCT	1 cut(s)	405
BisI	GCNGC	1 cut(s)	753
BlsI	GCNGC	1 cut(s)	754
BmcAI	AGTACT	1 cut(s)	432
Bme1390I	CCNGG	1 cut(s)	943
Bme18I	GGWCC	1 cut(s)	653
BmgT120I	GGNCC	2 cut(s)	634, 653
BmiI	GGNNCC	3 cut(s)	655, 872, 940
BmrFI	CCNGG	1 cut(s)	943
BmsI	GCATC	7 cut(s)	67, 85, 277, 492, 507, 543, 684
BpmI	CTGGAG	1 cut(s)	691
Bpu10I	CCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	4 cut(s)	110, 236, 399, 647
BpuMI	CCSGG	1 cut(s)	943
BsaJI	CCNNGG	2 cut(s)	866, 1003
BsaWI	WCCGGW	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	1 cut(s)	883
Bse1I	ACTGG	3 cut(s)	20, 674, 984
Bse3DI	GCAATG	2 cut(s)	159, 747
BseAI	TCCGGA	1 cut(s)	193
BseDI	CCNNGG	2 cut(s)	866, 1003
BseGI	GGATG	3 cut(s)	430, 595, 796
BseLI	CCNNNNNNNGG	1 cut(s)	883
BseMI	GCAATG	2 cut(s)	159, 747
BseMII	CTCAG	2 cut(s)	282, 297
BseNI	ACTGG	3 cut(s)	20, 674, 984
BseRI	GAGGAG	1 cut(s)	951
BseXI	GCAGC	1 cut(s)	764
BseYI	CCCAGC	2 cut(s)	265, 657
BsgI	GTGCAG	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	366
BshFI	GGCC	2 cut(s)	203, 635
BshNI	GGYRCC	1 cut(s)	870
BsiHKAI	GWGCWC	3 cut(s)	210, 415, 835
BsiSI	CCGG	2 cut(s)	194, 942
BslFI	GGGAC	2 cut(s)	639, 852
BslI	CCNNNNNNNGG	1 cut(s)	883
BsmAI	GTCTC	1 cut(s)	777
BsmFI	GGGAC	2 cut(s)	639, 852
BsnI	GGCC	2 cut(s)	203, 635
Bsp1286I	GDGCHC	3 cut(s)	210, 415, 835
Bsp13I	TCCGGA	1 cut(s)	193
Bsp1407I	TGTACA	1 cut(s)	774
Bsp143I	GATC	4 cut(s)	229, 247, 405, 577
BspANI	GGCC	2 cut(s)	203, 635
BspCNI	CTCAG	2 cut(s)	283, 296
BspEI	TCCGGA	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	697
BspLI	GGNNCC	3 cut(s)	655, 872, 940
BspMAI	CTGCAG	1 cut(s)	683
BspMI	ACCTGC	1 cut(s)	874
BspPI	GGATC	2 cut(s)	224, 572
BspT107I	GGYRCC	1 cut(s)	870
BsrDI	GCAATG	2 cut(s)	159, 747
BsrGI	TGTACA	1 cut(s)	774
BsrI	ACTGG	3 cut(s)	20, 674, 984
BssECI	CCNNGG	2 cut(s)	866, 1003
BssMI	GATC	4 cut(s)	229, 247, 405, 577
BssSI	CACGAG	1 cut(s)	814
BssT1I	CCWWGG	1 cut(s)	1003
Bst2BI	CACGAG	1 cut(s)	814
Bst4CI	ACNGT	4 cut(s)	374, 386, 779, 867
Bst6I	CTCTTC	1 cut(s)	790
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstAUI	TGTACA	1 cut(s)	774
BstC8I	GCNNGC	2 cut(s)	201, 948
BstDEI	CTNAG	2 cut(s)	283, 291
BstDSI	CCRYGG	1 cut(s)	866
BstF5I	GGATG	3 cut(s)	430, 595, 796
BstFNI	CGCG	1 cut(s)	366
BstKTI	GATC	4 cut(s)	232, 250, 408, 580
BstMAI	GTCTC	1 cut(s)	777
BstMBI	GATC	4 cut(s)	229, 247, 405, 577
BstMWI	GCNNNNNNNGC	4 cut(s)	86, 95, 205, 947
BstNSI	RCATGY	1 cut(s)	950
BstSCI	CCNGG	1 cut(s)	941
BstSFI	CTRYAG	1 cut(s)	679
BstUI	CGCG	1 cut(s)	366
BstV1I	GCAGC	1 cut(s)	764
BstX2I	RGATCY	2 cut(s)	229, 405
BstYI	RGATCY	2 cut(s)	229, 405
BsuRI	GGCC	2 cut(s)	203, 635
BtgI	CCRYGG	1 cut(s)	866
BtsCI	GGATG	3 cut(s)	430, 595, 796
BtsIMutI	CAGTG	2 cut(s)	784, 977
BveI	ACCTGC	1 cut(s)	874
Cac8I	GCNNGC	2 cut(s)	201, 948
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	1 cut(s)	697
Cfr13I	GGNCC	2 cut(s)	634, 653
Csp6I	GTAC	4 cut(s)	431, 684, 775, 871
CviAII	CATG	5 cut(s)	329, 641, 698, 858, 947
CviQI	GTAC	4 cut(s)	431, 684, 775, 871
DdeI	CTNAG	2 cut(s)	283, 291
DpnI	GATC	4 cut(s)	231, 249, 407, 579
DpnII	GATC	4 cut(s)	229, 247, 405, 577
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	790
EarI	CTCTTC	1 cut(s)	790
Ecl136II	GAGCTC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	1003
Eco24I	GRGCYC	1 cut(s)	210
Eco32I	GATATC	1 cut(s)	339
Eco47I	GGWCC	1 cut(s)	653
Eco53kI	GAGCTC	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRV	GATATC	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	1003
EcoT22I	ATGCAT	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	1003
FaeI	CATG	5 cut(s)	332, 644, 701, 861, 950
FaqI	GGGAC	2 cut(s)	639, 852
FatI	CATG	5 cut(s)	328, 640, 697, 857, 946
FauNDI	CATATG	1 cut(s)	100
Fnu4HI	GCNGC	1 cut(s)	753
FokI	GGATG	3 cut(s)	437, 602, 803
FriOI	GRGCYC	1 cut(s)	210
Fsp4HI	GCNGC	1 cut(s)	753
GluI	GCNGC	1 cut(s)	753
GsaI	CCCAGC	2 cut(s)	269, 661
GsuI	CTGGAG	1 cut(s)	691
HaeIII	GGCC	2 cut(s)	203, 635
HapII	CCGG	2 cut(s)	194, 942
Hin1II	CATG	5 cut(s)	332, 644, 701, 861, 950
HinfI	GANTC	5 cut(s)	14, 258, 325, 710, 1010
HpaII	CCGG	2 cut(s)	194, 942
HphI	GGTGA	4 cut(s)	398, 500, 898, 982
Hpy166II	GTNNAC	2 cut(s)	775, 813
Hpy188I	TCNGA	4 cut(s)	74, 286, 343, 935
Hpy188III	TCNNGA	7 cut(s)	194, 275, 587, 600, 664, 698, 902
Hpy8I	GTNNAC	2 cut(s)	775, 813
HpyAV	CCTTC	3 cut(s)	163, 243, 1029
HpyCH4III	ACNGT	4 cut(s)	374, 386, 779, 867
HpyF10VI	GCNNNNNNNGC	4 cut(s)	86, 95, 205, 947
HpyF3I	CTNAG	2 cut(s)	283, 291
Hsp92II	CATG	5 cut(s)	332, 644, 701, 861, 950
Kpn2I	TCCGGA	1 cut(s)	193
KpnI	GGTACC	1 cut(s)	874
Kzo9I	GATC	4 cut(s)	229, 247, 405, 577
LmnI	GCTCC	3 cut(s)	196, 672, 938
Lsp1109I	GCAGC	1 cut(s)	764
LweI	GCATC	7 cut(s)	67, 85, 277, 492, 507, 543, 684
MalI	GATC	4 cut(s)	231, 249, 407, 579
MboI	GATC	4 cut(s)	229, 247, 405, 577
MboII	GAAGA	2 cut(s)	719, 807
MflI	RGATCY	2 cut(s)	229, 405
MhlI	GDGCHC	3 cut(s)	210, 415, 835
MluCI	AATT	2 cut(s)	561, 605
MlyI	GAGTC	2 cut(s)	267, 334
MnlI	CCTC	8 cut(s)	248, 286, 292, 296, 484, 647, 929, 1003
Mph1103I	ATGCAT	1 cut(s)	100
MroI	TCCGGA	1 cut(s)	193
MspI	CCGG	2 cut(s)	194, 942
MspR9I	CCNGG	1 cut(s)	943
MvnI	CGCG	1 cut(s)	366
MwoI	GCNNNNNNNGC	4 cut(s)	86, 95, 205, 947
NciI	CCSGG	1 cut(s)	943
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	4 cut(s)	229, 247, 405, 577
NlaIII	CATG	5 cut(s)	332, 644, 701, 861, 950
NlaIV	GGNNCC	3 cut(s)	655, 872, 940
NmeAIII	GCCGAG	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	100
NspI	RCATGY	1 cut(s)	950
PaeI	GCATGC	1 cut(s)	950
PagI	TCATGA	1 cut(s)	697
PaqCI	CACCTGC	1 cut(s)	874
PfeI	GAWTC	3 cut(s)	14, 710, 1010
PkrI	GCNGC	1 cut(s)	754
PleI	GAGTC	2 cut(s)	266, 333
PpsI	GAGTC	2 cut(s)	266, 333
Psp124BI	GAGCTC	1 cut(s)	210
PspFI	CCCAGC	2 cut(s)	265, 657
PspN4I	GGNNCC	3 cut(s)	655, 872, 940
PspPI	GGNCC	2 cut(s)	634, 653
PstI	CTGCAG	1 cut(s)	683
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	2 cut(s)	229, 405
RsaI	GTAC	4 cut(s)	432, 685, 776, 872
RsaNI	GTAC	4 cut(s)	431, 684, 775, 871
SacI	GAGCTC	1 cut(s)	210
SatI	GCNGC	1 cut(s)	753
Sau3AI	GATC	4 cut(s)	229, 247, 405, 577
Sau96I	GGNCC	2 cut(s)	634, 653
ScaI	AGTACT	1 cut(s)	432
SchI	GAGTC	2 cut(s)	267, 334
ScrFI	CCNGG	1 cut(s)	943
SduI	GDGCHC	3 cut(s)	210, 415, 835
SfaNI	GCATC	7 cut(s)	67, 85, 277, 492, 507, 543, 684
SfcI	CTRYAG	1 cut(s)	679
SinI	GGWCC	1 cut(s)	653
SmlI	CTYRAG	4 cut(s)	125, 251, 414, 662
SmoI	CTYRAG	4 cut(s)	125, 251, 414, 662
SphI	GCATGC	1 cut(s)	950
Sse9I	AATT	2 cut(s)	561, 605
SspI	AATATT	1 cut(s)	693
SstI	GAGCTC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	941
StyI	CCWWGG	1 cut(s)	1003
TaaI	ACNGT	4 cut(s)	374, 386, 779, 867
TaqI	TCGA	2 cut(s)	515, 1027
TasI	AATT	2 cut(s)	561, 605
TatI	WGTACW	2 cut(s)	430, 774
TfiI	GAWTC	3 cut(s)	14, 710, 1010
TscAI	CASTG	2 cut(s)	784, 984
TseI	GCWGC	1 cut(s)	752
TspDTI	ATGAA	4 cut(s)	27, 441, 548, 686
TspGWI	ACGGA	3 cut(s)	570, 803, 945
TspRI	CASTG	2 cut(s)	784, 984
VpaK11BI	GGWCC	1 cut(s)	653
XapI	RAATTY	1 cut(s)	605
XceI	RCATGY	1 cut(s)	950
XcmI	CCANNNNNNNNNTGG	1 cut(s)	647
ZrmI	AGTACT	1 cut(s)	432
Zsp2I	ATGCAT	1 cut(s)	100

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.