Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003577

Physical Location & Seq

Genomic Coordinates Forward (+)

4490753 .. 4493138

Gene Structure 2386 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG052700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGTCTGTGTTCGATGACGCAGAGGCCAACGTGCTATTCGTGGAATCTCCGATTGGGGTTGGCTTTTCATACACCAACACAACTTCTGATTTTGATAAGCTAGGAGATAACTTCACAGCGCAAGATTCATACACATTCCTGCATAAGTGGTTTCTCAAATTCCCATCATACAGAAACCGGACCTTGTATATTGCAGGCGAGAGTTATGCAGGAAAATATATTCCGGAGCTAGCTGATTTCATCTTTGATAGGAACTCAGATCCTTCCCTCCATATTGATCTCAAGGGTATCCTGATGGGTAATCCTGAAACAGATGATGCTGAGGATTGGAGAGGTCTGGTGGATTATGCTTGGAGTCATGCTGTGGTTTCGGACGAAACTCACAAATTAATAAGCGAGTACTGTGATTTCCACAGTAATGATACTTGGGAAAATAAAAATTGTACACAAGGTGTGGATGAAGTATTTAAACAGTACAAGGAGATAGATATATACAGCCTTTACACCCCGACCTGCACTACATATGATATAGCAACTTCGAATACTGCTGATTCTAAAGTTCAAGTCATGACGATGAAGCACACATCTACAATGATACCAAGGATTATGGGAGGCTATGATGCATGTCTGGATGGTTATTCGAAAAAATTCTTCAACAGAGCAGATGTGCAAAAGGCCCTCCATGCCAGTGATGGTCTCCAGCTCAAGAACTGGAGCATCTGCAATAATCAAATATTTACCAATTGGTCAGATTCAAAGCCATCTCTTCTTCCCATATACAAGAAACTCATTGCAGCAGGACTAAGAATATGGTTGTACAGTGGAGACACGGATGGAAGAGTACCTGTGCTGTCCACAAGATATAGCTTAGGTGCTCTAGGGCTGCCTATTACAAAGACATGGAGACCTTGGTACCATCAGAAGCAGGTGAGTGGTTGGTATCAAGAATATAAGGGGCTTACATATGCAACAGTTAGAGGAGCTGGGCATGATGTTCCCTCCTTCAAACCAGCAGAGTCATTGGTTCTATTCACATCTTTTCTCCTAGGGGAATCTCCGCCTTCGACTCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

357

Amino Acids

40.52

Weight (kDa)

5.49

Isoelectric Point (pI)

29.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	8 - 349	1.5e-99	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003577)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11080 AT1G11080 AT1G61130 AT4G15100
fragaria_vesca	FvH4_3g04600 FvH4_3g04600 FvH4_3g04600 FvH4_3g04620
malus_domestica	MD05G1322000.v1.1 MD10G1300000.v1.1
prunus_persica	Prupe.4G040800_v2.0.a1 Prupe.4G040800_v2.0.a1
pyrus_communis	pycom05g29630 pycom10g25270
rosa_chinensis	RchiOBHm_Chr5g0007541 RchiOBHm_Chr5g0007551
rosa_laevigata	RLG00000031466 RLG00000031467
rosa_multiflora	Rmu_ssc0000182.1_g000013
rosa_roxburghii	Rroxscaffold_1G00068870 Rroxscaffold_1G00068880
rosa_rugosa	Rorug04G0428200 Rorug04G0428300 Rorug04G0428400 Rorug04G0428500
rosa_samantha	Rh5AG055900 Rh5AG056100 Rh5BG053600 Rh5BG053700 Rh5CG063400 Rh5CG063500 Rh5DG052600 Rh5DG052700
rosa_wichuraiana	Rw5G005400 Rw5G005410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	916
Acc36I	ACCTGC	2 cut(s)	521, 916
Acc65I	GGTACC	1 cut(s)	912
AccB1I	GGYRCC	1 cut(s)	912
AccIII	TCCGGA	1 cut(s)	223
AciI	CCGC	1 cut(s)	1058
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	158, 647
AdeI	CACNNNGTG	1 cut(s)	452
AfaI	GTAC	6 cut(s)	401, 445, 476, 818, 843, 914
AgsI	TTSAA	4 cut(s)	563, 655, 756, 1006
AjuI	GAANNNNNNNTTGG	4 cut(s)	20, 36, 52, 68
AluBI	AGCT	6 cut(s)	100, 229, 233, 703, 867, 983
AluI	AGCT	6 cut(s)	100, 229, 233, 703, 867, 983
Alw21I	GWGCWC	1 cut(s)	877
Alw26I	GTCTC	3 cut(s)	701, 819, 898
AlwI	GGATC	1 cut(s)	254
Aor13HI	TCCGGA	1 cut(s)	223
AoxI	GGCC	2 cut(s)	24, 675
ApeKI	GCWGC	2 cut(s)	794, 883
ApoI	RAATTY	2 cut(s)	158, 647
AseI	ATTAAT	1 cut(s)	389
Asp700I	GAANNNNTTC	1 cut(s)	647
Asp718I	GGTACC	1 cut(s)	912
AspA2I	CCTAGG	1 cut(s)	1045
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	2 cut(s)	180, 676
AsuHPI	GGTGA	1 cut(s)	940
AsuII	TTCGAA	2 cut(s)	539, 641
AsuNHI	GCTAGC	1 cut(s)	229
AvaII	GGWCC	1 cut(s)	180
AvrII	CCTAGG	1 cut(s)	1045
BaeI	ACNNNNGTAYC	2 cut(s)	896, 929
BanI	GGYRCC	1 cut(s)	912
Bbv12I	GWGCWC	1 cut(s)	877
BbvCI	CCTCAGC	1 cut(s)	321
BbvI	GCAGC	2 cut(s)	806, 870
BccI	CCATC	7 cut(s)	172, 289, 626, 686, 769, 827, 924
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciVI	GTATCC	1 cut(s)	299
BcoDI	GTCTC	3 cut(s)	701, 819, 898
BfaI	CTAG	4 cut(s)	101, 230, 878, 1046
BfuAI	ACCTGC	2 cut(s)	521, 916
BfuI	GTATCC	1 cut(s)	299
BisI	GCNGC	2 cut(s)	795, 884
BlnI	CCTAGG	1 cut(s)	1045
BlsI	GCNGC	2 cut(s)	796, 885
BmcAI	AGTACT	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	180
BmgT120I	GGNCC	2 cut(s)	180, 676
BmiI	GGNNCC	1 cut(s)	914
BmsI	GCATC	3 cut(s)	307, 610, 726
BmtI	GCTAGC	1 cut(s)	233
BpmI	CTGGAG	2 cut(s)	683, 733
Bpu10I	CCTNAGC	2 cut(s)	321, 868
Bpu14I	TTCGAA	2 cut(s)	539, 641
BpuEI	CTTGAG	2 cut(s)	266, 689
BsaI	GGTCTC	2 cut(s)	701, 898
BsaJI	CCNNGG	3 cut(s)	599, 908, 1045
BsaWI	WCCGGW	2 cut(s)	177, 223
Bse1I	ACTGG	2 cut(s)	687, 716
Bse3DI	GCAATG	1 cut(s)	789
BseAI	TCCGGA	1 cut(s)	223
BseDI	CCNNGG	3 cut(s)	599, 908, 1045
BseGI	GGATG	3 cut(s)	463, 637, 838
BseMI	GCAATG	1 cut(s)	789
BseMII	CTCAG	2 cut(s)	270, 312
BseNI	ACTGG	2 cut(s)	687, 716
BseRI	GAGGAG	1 cut(s)	993
BseXI	GCAGC	2 cut(s)	806, 870
BseYI	CCCAGC	1 cut(s)	983
BsgI	GTGCAG	1 cut(s)	499
BshFI	GGCC	2 cut(s)	26, 677
BshNI	GGYRCC	1 cut(s)	912
BsiHKAI	GWGCWC	1 cut(s)	877
BsiSI	CCGG	2 cut(s)	178, 224
BsmAI	GTCTC	3 cut(s)	701, 819, 898
BsnI	GGCC	2 cut(s)	26, 677
Bso31I	GGTCTC	2 cut(s)	701, 898
Bsp119I	TTCGAA	2 cut(s)	539, 641
Bsp1286I	GDGCHC	1 cut(s)	877
Bsp13I	TCCGGA	1 cut(s)	223
Bsp1407I	TGTACA	2 cut(s)	443, 816
Bsp143I	GATC	2 cut(s)	259, 277
BspACI	CCGC	1 cut(s)	1058
BspANI	GGCC	2 cut(s)	26, 677
BspCNI	CTCAG	2 cut(s)	269, 313
BspEI	TCCGGA	1 cut(s)	223
BspHI	TCATGA	1 cut(s)	567
BspLI	GGNNCC	1 cut(s)	914
BspMI	ACCTGC	2 cut(s)	521, 916
BspOI	GCTAGC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	254
BspT104I	TTCGAA	2 cut(s)	539, 641
BspT107I	GGYRCC	1 cut(s)	912
BspTNI	GGTCTC	2 cut(s)	701, 898
BsrDI	GCAATG	1 cut(s)	789
BsrGI	TGTACA	2 cut(s)	443, 816
BsrI	ACTGG	2 cut(s)	687, 716
BssECI	CCNNGG	3 cut(s)	599, 908, 1045
BssMI	GATC	2 cut(s)	259, 277
BssT1I	CCWWGG	3 cut(s)	599, 908, 1045
Bst4CI	ACNGT	5 cut(s)	404, 416, 474, 821, 973
Bst6I	CTCTTC	2 cut(s)	771, 832
BstAUI	TGTACA	2 cut(s)	443, 816
BstBI	TTCGAA	2 cut(s)	539, 641
BstC8I	GCNNGC	2 cut(s)	196, 231
BstDEI	CTNAG	4 cut(s)	256, 321, 803, 868
BstF5I	GGATG	3 cut(s)	463, 637, 838
BstHHI	GCGC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	262, 280
BstMAI	GTCTC	3 cut(s)	701, 819, 898
BstMBI	GATC	2 cut(s)	259, 277
BstMWI	GCNNNNNNNGC	1 cut(s)	683
BstNSI	RCATGY	1 cut(s)	627
BstV1I	GCAGC	2 cut(s)	806, 870
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuI	GTATCC	1 cut(s)	299
BsuRI	GGCC	2 cut(s)	26, 677
BtsCI	GGATG	3 cut(s)	463, 637, 838
BtsIMutI	CAGTG	2 cut(s)	694, 826
BveI	ACCTGC	2 cut(s)	521, 916
Cac8I	GCNNGC	2 cut(s)	196, 231
CciI	TCATGA	1 cut(s)	567
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	180, 676
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	6 cut(s)	400, 444, 475, 817, 842, 913
CviAII	CATG	6 cut(s)	359, 568, 624, 683, 900, 989
CviQI	GTAC	6 cut(s)	400, 444, 475, 817, 842, 913
DdeI	CTNAG	4 cut(s)	256, 321, 803, 868
DpnI	GATC	2 cut(s)	261, 279
DpnII	GATC	2 cut(s)	259, 277
DraI	TTTAAA	1 cut(s)	469
DraIII	CACNNNGTG	1 cut(s)	452
Eam1104I	CTCTTC	2 cut(s)	771, 832
EarI	CTCTTC	2 cut(s)	771, 832
EciI	GGCGGA	1 cut(s)	1047
Eco130I	CCWWGG	3 cut(s)	599, 908, 1045
Eco31I	GGTCTC	2 cut(s)	701, 898
Eco47I	GGWCC	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	676
EcoT14I	CCWWGG	3 cut(s)	599, 908, 1045
EcoT22I	ATGCAT	1 cut(s)	625
ErhI	CCWWGG	3 cut(s)	599, 908, 1045
FaeI	CATG	6 cut(s)	362, 571, 627, 686, 903, 992
FatI	CATG	6 cut(s)	358, 567, 623, 682, 899, 988
FauNDI	CATATG	2 cut(s)	523, 964
Fnu4HI	GCNGC	2 cut(s)	795, 884
FokI	GGATG	3 cut(s)	470, 644, 845
Fsp4HI	GCNGC	2 cut(s)	795, 884
FspBI	CTAG	4 cut(s)	101, 230, 878, 1046
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	2 cut(s)	795, 884
GsaI	CCCAGC	1 cut(s)	987
GsuI	CTGGAG	2 cut(s)	683, 733
HaeIII	GGCC	2 cut(s)	26, 677
HapII	CCGG	2 cut(s)	178, 224
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	1 cut(s)	121
Hin1II	CATG	6 cut(s)	362, 571, 627, 686, 903, 992
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HinfI	GANTC	8 cut(s)	44, 125, 355, 551, 752, 1016, 1052, 1066
HpaII	CCGG	2 cut(s)	178, 224
HphI	GGTGA	1 cut(s)	940
Hpy166II	GTNNAC	2 cut(s)	446, 855
Hpy188I	TCNGA	6 cut(s)	51, 88, 259, 373, 751, 921
Hpy188III	TCNNGA	7 cut(s)	224, 292, 305, 568, 629, 706, 944
Hpy8I	GTNNAC	2 cut(s)	446, 855
HpyAV	CCTTC	3 cut(s)	273, 1012, 1071
HpyCH4III	ACNGT	5 cut(s)	404, 416, 474, 821, 973
HpyCH4IV	ACGT	1 cut(s)	30
HpyCH4V	TGCA	9 cut(s)	142, 194, 209, 516, 623, 670, 723, 794, 968
HpyF10VI	GCNNNNNNNGC	1 cut(s)	683
HpyF3I	CTNAG	4 cut(s)	256, 321, 803, 868
HpySE526I	ACGT	1 cut(s)	30
Hsp92II	CATG	6 cut(s)	362, 571, 627, 686, 903, 992
HspAI	GCGC	1 cut(s)	119
Kpn2I	TCCGGA	1 cut(s)	223
KpnI	GGTACC	1 cut(s)	916
Kzo9I	GATC	2 cut(s)	259, 277
LmnI	GCTCC	3 cut(s)	226, 714, 980
Lsp1109I	GCAGC	2 cut(s)	806, 870
LweI	GCATC	3 cut(s)	307, 610, 726
MaeI	CTAG	4 cut(s)	101, 230, 878, 1046
MaeII	ACGT	1 cut(s)	30
MalI	GATC	2 cut(s)	261, 279
MboI	GATC	2 cut(s)	259, 277
MboII	GAAGA	4 cut(s)	643, 758, 761, 849
MfeI	CAATTG	1 cut(s)	742
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	877
MluCI	AATT	5 cut(s)	158, 386, 439, 647, 742
MlyI	GAGTC	3 cut(s)	364, 1025, 1060
MnlI	CCTC	8 cut(s)	16, 278, 316, 326, 605, 689, 971, 1009
Mph1103I	ATGCAT	1 cut(s)	625
MroI	TCCGGA	1 cut(s)	223
MroXI	GAANNNNTTC	1 cut(s)	647
MseI	TTAA	2 cut(s)	389, 468
MslI	CAYNNNNRTG	3 cut(s)	417, 572, 687
MspI	CCGG	2 cut(s)	178, 224
MunI	CAATTG	1 cut(s)	742
MwoI	GCNNNNNNNGC	1 cut(s)	683
NdeI	CATATG	2 cut(s)	523, 964
NdeII	GATC	2 cut(s)	259, 277
NheI	GCTAGC	1 cut(s)	229
NlaIII	CATG	6 cut(s)	362, 571, 627, 686, 903, 992
NlaIV	GGNNCC	1 cut(s)	914
NsiI	ATGCAT	1 cut(s)	625
NspI	RCATGY	1 cut(s)	627
NspV	TTCGAA	2 cut(s)	539, 641
PagI	TCATGA	1 cut(s)	567
PaqCI	CACCTGC	1 cut(s)	916
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdmI	GAANNNNTTC	1 cut(s)	647
PfeI	GAWTC	5 cut(s)	44, 125, 551, 752, 1052
PkrI	GCNGC	2 cut(s)	796, 885
PleI	GAGTC	3 cut(s)	363, 1024, 1060
PpsI	GAGTC	3 cut(s)	363, 1024, 1060
PshBI	ATTAAT	1 cut(s)	389
PspFI	CCCAGC	1 cut(s)	983
PspN4I	GGNNCC	1 cut(s)	914
PspPI	GGNCC	2 cut(s)	180, 676
PsuI	RGATCY	1 cut(s)	259
RsaI	GTAC	6 cut(s)	401, 445, 476, 818, 843, 914
RsaNI	GTAC	6 cut(s)	400, 444, 475, 817, 842, 913
RseI	CAYNNNNRTG	3 cut(s)	417, 572, 687
SaqAI	TTAA	2 cut(s)	389, 468
SatI	GCNGC	2 cut(s)	795, 884
Sau3AI	GATC	2 cut(s)	259, 277
Sau96I	GGNCC	2 cut(s)	180, 676
ScaI	AGTACT	1 cut(s)	401
SchI	GAGTC	3 cut(s)	364, 1025, 1060
SduI	GDGCHC	1 cut(s)	877
SfaNI	GCATC	3 cut(s)	307, 610, 726
SfuI	TTCGAA	2 cut(s)	539, 641
SinI	GGWCC	1 cut(s)	180
SmiMI	CAYNNNNRTG	3 cut(s)	417, 572, 687
SmlI	CTYRAG	2 cut(s)	281, 704
SmoI	CTYRAG	2 cut(s)	281, 704
Sse9I	AATT	5 cut(s)	158, 386, 439, 647, 742
SsiI	CCGC	1 cut(s)	1058
SspI	AATATT	1 cut(s)	735
SspMI	CTAG	4 cut(s)	101, 230, 878, 1046
StyI	CCWWGG	3 cut(s)	599, 908, 1045
TaaI	ACNGT	5 cut(s)	404, 416, 474, 821, 973
TaiI	ACGT	1 cut(s)	33
TaqI	TCGA	5 cut(s)	12, 539, 641, 1064, 1069
TasI	AATT	5 cut(s)	158, 386, 439, 647, 742
TatI	WGTACW	4 cut(s)	399, 443, 474, 816
TfiI	GAWTC	5 cut(s)	44, 125, 551, 752, 1052
Tru1I	TTAA	2 cut(s)	389, 468
Tru9I	TTAA	2 cut(s)	389, 468
TscAI	CASTG	2 cut(s)	694, 826
TseI	GCWGC	2 cut(s)	794, 883
TspDTI	ATGAA	5 cut(s)	57, 117, 229, 474, 590
TspGWI	ACGGA	1 cut(s)	845
TspRI	CASTG	2 cut(s)	694, 826
VpaK11BI	GGWCC	1 cut(s)	180
VspI	ATTAAT	1 cut(s)	389
XapI	RAATTY	2 cut(s)	158, 647
XceI	RCATGY	1 cut(s)	627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	689
XmaJI	CCTAGG	1 cut(s)	1045
XmnI	GAANNNNTTC	1 cut(s)	647
XspI	CTAG	4 cut(s)	101, 230, 878, 1046
ZrmI	AGTACT	1 cut(s)	401
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.