Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001809

Physical Location & Seq

Genomic Coordinates Forward (+)

9470370 .. 9472594

Gene Structure 2225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G16830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCAACTTTGAACCCTTTTGATTTGTTGGATGATGATGCTGAGGATCCAAGCCAGCTCGCTGTTGCCATCGAGAAGATTGATAAGTCCAAGAAATCTGGACAGGTTTCGAGCTTGCCTGCTAAGTCAGCTCCTAAGCTTCCATCGAAGCCACTTCCTCCTGCTCAAGCCGTGAGAGAGGCAAGGAGTGATGCTCCACGTGGTGGTGGAGGCCGTGGAGGATTTAACCGTGGTCGTGGTGGTTACAACCGTGATGATGGTAACAATGGATATTCAGGGGGATACACTAAACCCTCAGGTGAAGGAGATGTTTCAAAGTCTTCTTACGAGAGGCGTGGCGGTGGTGGTGCTCCTCGTGGTTCCTTCCGTGGTGAAGGTGGTGGACCTGGTGGTGGTCGTCGTGGTGGATTCAGCAATGAGGGTGGTGATGGGGAACGTCCTCGAAGGGCCTTTGAGCGTCGTAGTGGAACTGGCAGAGGGAGTGACTTCAAGCGTGACGGATCTGGTCGTGGGAATTGGGGAACTCCAGGGGAAGAGATAGCTGCTGAGACTGAAGCAGTAGCTGGTGTTGAGACTGAGAAGGATGTTGGAGAGAAGCCAGCTGTTGATGATGTAGCTGCTGATGCTAACAAGGAGGATACTGTTGTTGAGGAGAAAGAGCCTGAGGATAAGGAAATGACTCTTGATGAGTATGAGAAAATACTCGAGGAGAAGAAAAAGGCACTTCAATCATTAACTACCTCTGAGAGGAAAGTTGATACGAAAGTGTTTGAATCAATGCAACAACTGTCAAACAAGAAGTCTAATGATGAAATCTTCATCAAGCTGGGTTCTGATAAGGACAAACGCAAAGATGACAAAGAAGAGAAGGCTAAGAAGGCTGTGAGCATCAATGAGTTTCTGAAGCCAGCAGAGGGTGGGAACTACTACCGAGGAGGTCGTGGTGGCCGTGGACGTGGTGGTCGTGGCCGTGGAGGTGTTTCTAGTGGCGAATCTGGTGGTTACCGTAATGAAGCTGCACCGGCAATTGGAGATGCTGCTCAGTTCCCATCTCTTGGGGGCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0005886 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009737 GO:0009787 GO:0009966 GO:0009987 GO:0010033 GO:0010646 GO:0016020 GO:0023051 GO:0033554 GO:0033993 GO:0042221 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048471 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071944 GO:0097159 GO:0097305 GO:0104004 GO:1901363 GO:1901419 GO:1901700 GO:1905957

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HABP4_PAI-RBP1 Stm1_N

Protein Analysis

355

Amino Acids

37.47

Weight (kDa)

7.68

Isoelectric Point (pI)

39.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HABP4_PAI-RBP1	PF04774	137 - 242	3.6e-27	Hyaluronan / mRNA binding family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16830 AT4G16830 AT4G16830
fragaria_vesca	FvH4_5g20020 FvH4_5g20020 FvH4_5g20020 FvH4_7g10280
malus_domestica	MD02G1213500.v1.1 MD04G1050100.v1.1 MD06G1049800.v1.1 MD07G1109500.v1.1
prunus_persica	Prupe.2G132500_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1
pyrus_communis	pycom04g04410 pycom06g04220 pycom07g09400 pycom12646g00030
rosa_chinensis	RchiOBHm_Chr1g0348031 RchiOBHm_Chr7g0204831 RchiOBHm_Chr7g0204851
rosa_laevigata	RLG00000003428 RLG00000028697
rosa_multiflora	Rmu_sc0002180.1_g000016 Rmu_sc0002180.1_g000023 Rmu_ssc0000263.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252730 Rroxscaffold_4G00307320
rosa_rugosa	Rorug01G0190700 Rorug01G0190800 Rorug07G0086000 Rorug07G0086000 Rorug07G0086100
rosa_samantha	Rh1AG209300 Rh1BG174300 Rh1CG193700 Rh1DG204100 Rh7AG216500 Rh7AG216700 Rh7BG213600 Rh7CG230000 Rh7DG224100 Rh7DG224300
rosa_wichuraiana	Rw1G017440 Rw7G018760 Rw7G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	960
AccB7I	CCANNNNNTGG	2 cut(s)	203, 1055
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	3 cut(s)	41, 54, 508
AcoI	YGGCCR	2 cut(s)	946, 967
AcuI	CTGAAG	2 cut(s)	573, 923
AcvI	CACGTG	1 cut(s)	200
AdeI	CACNNNGTG	1 cut(s)	203
AfiI	CCNNNNNNNGG	6 cut(s)	203, 392, 747, 914, 1028, 1055
AgsI	TTSAA	5 cut(s)	13, 315, 490, 728, 773
AjiI	CACGTC	1 cut(s)	956
AjnI	CCWGG	2 cut(s)	385, 526
Alw21I	GWGCWC	1 cut(s)	352
Alw26I	GTCTC	2 cut(s)	542, 566
AlwI	GGATC	3 cut(s)	41, 54, 508
AlwNI	CAGNNNCTG	1 cut(s)	563
Ama87I	CYCGRG	1 cut(s)	704
AoxI	GGCC	4 cut(s)	211, 447, 946, 967
ApeKI	GCWGC	4 cut(s)	542, 617, 1016, 1037
ArsI	GACNNNNNNTTYG	2 cut(s)	785, 817
AspS9I	GGNCC	2 cut(s)	383, 447
AsuHPI	GGTGA	3 cut(s)	311, 383, 437
AvaI	CYCGRG	1 cut(s)	704
AvaII	GGWCC	1 cut(s)	383
AxyI	CCTNAGG	2 cut(s)	295, 663
BaeI	ACNNNNGTAYC	4 cut(s)	630, 663, 750, 783
BamHI	GGATCC	1 cut(s)	46
BauI	CACGAG	1 cut(s)	354
BbrPI	CACGTG	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	312
Bbv12I	GWGCWC	1 cut(s)	352
BbvCI	CCTCAGC	1 cut(s)	42
BbvI	GCAGC	4 cut(s)	529, 604, 1003, 1024
BccI	CCATC	5 cut(s)	77, 151, 251, 422, 1057
BceAI	ACGGC	4 cut(s)	155, 198, 933, 954
BciT130I	CCWGG	2 cut(s)	387, 528
BciVI	GTATCC	2 cut(s)	275, 631
BcoDI	GTCTC	2 cut(s)	542, 566
BfaI	CTAG	1 cut(s)	984
BfuI	GTATCC	2 cut(s)	275, 631
BisI	GCNGC	4 cut(s)	543, 618, 1017, 1038
BlsI	GCNGC	4 cut(s)	544, 619, 1018, 1039
Bme1390I	CCNGG	2 cut(s)	387, 528
Bme18I	GGWCC	1 cut(s)	383
BmeT110I	CYCGRG	1 cut(s)	704
BmgBI	CACGTC	1 cut(s)	956
BmgT120I	GGNCC	2 cut(s)	383, 447
BmiI	GGNNCC	2 cut(s)	48, 361
BmrFI	CCNGG	2 cut(s)	387, 528
BmsI	GCATC	5 cut(s)	28, 181, 613, 897, 1024
BpiI	GAAGAC	1 cut(s)	312
BplI	GAGNNNNNCTC	2 cut(s)	178, 210
BpmI	CTGGAG	1 cut(s)	510
Bpu10I	CCTNAGC	2 cut(s)	42, 135
BpuEI	CTTGAG	1 cut(s)	150
BsaAI	YACGTR	1 cut(s)	200
BsaJI	CCNNGG	7 cut(s)	214, 229, 367, 527, 931, 949, 970
Bsc4I	CCNNNNNNNGG	6 cut(s)	203, 392, 747, 914, 1028, 1055
Bse118I	RCCGGY	1 cut(s)	1021
Bse1I	ACTGG	1 cut(s)	475
Bse21I	CCTNAGG	2 cut(s)	295, 663
Bse3DI	GCAATG	1 cut(s)	421
BseBI	CCWGG	2 cut(s)	387, 528
BseDI	CCNNGG	7 cut(s)	214, 229, 367, 527, 931, 949, 970
BseGI	GGATG	2 cut(s)	37, 589
BseLI	CCNNNNNNNGG	6 cut(s)	203, 392, 747, 914, 1028, 1055
BseMI	GCAATG	1 cut(s)	421
BseMII	CTCAG	7 cut(s)	33, 309, 537, 567, 654, 735, 1055
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	4 cut(s)	342, 665, 722, 948
BseXI	GCAGC	4 cut(s)	529, 604, 1003, 1024
BseYI	CCCAGC	1 cut(s)	826
BsgI	GTGCAG	1 cut(s)	1002
BshFI	GGCC	4 cut(s)	213, 449, 948, 969
BsiHKAI	GWGCWC	1 cut(s)	352
BsiHKCI	CYCGRG	1 cut(s)	704
BsiSI	CCGG	1 cut(s)	1022
BslI	CCNNNNNNNGG	6 cut(s)	203, 392, 747, 914, 1028, 1055
BsmAI	GTCTC	2 cut(s)	542, 566
BsnI	GGCC	4 cut(s)	213, 449, 948, 969
BsoBI	CYCGRG	1 cut(s)	704
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	2 cut(s)	46, 500
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	4 cut(s)	213, 449, 948, 969
BspCNI	CTCAG	7 cut(s)	34, 308, 538, 568, 655, 736, 1054
BspLI	GGNNCC	2 cut(s)	48, 361
BspPI	GGATC	3 cut(s)	41, 54, 508
BsrDI	GCAATG	1 cut(s)	421
BsrFI	RCCGGY	1 cut(s)	1021
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	1 cut(s)	1021
BssECI	CCNNGG	7 cut(s)	214, 229, 367, 527, 931, 949, 970
BssMI	GATC	2 cut(s)	46, 500
BssSI	CACGAG	1 cut(s)	354
Bst2BI	CACGAG	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	387, 528
Bst4CI	ACNGT	5 cut(s)	230, 251, 643, 789, 1007
Bst6I	CTCTTC	2 cut(s)	528, 858
BstBAI	YACGTR	1 cut(s)	200
BstC8I	GCNNGC	6 cut(s)	56, 60, 116, 120, 600, 909
BstDSI	CCRYGG	5 cut(s)	214, 229, 367, 949, 970
BstEII	GGTNACC	1 cut(s)	1001
BstENI	CCTNNNNNAGG	1 cut(s)	745
BstF5I	GGATG	2 cut(s)	37, 589
BstKTI	GATC	2 cut(s)	49, 503
BstMAI	GTCTC	2 cut(s)	542, 566
BstMBI	GATC	2 cut(s)	46, 500
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 623, 878, 1022
BstNI	CCWGG	2 cut(s)	387, 528
BstPI	GGTNACC	1 cut(s)	1001
BstSCI	CCNGG	2 cut(s)	385, 526
BstV1I	GCAGC	4 cut(s)	529, 604, 1003, 1024
BstV2I	GAAGAC	1 cut(s)	312
BstX2I	RGATCY	2 cut(s)	46, 500
BstYI	RGATCY	2 cut(s)	46, 500
Bsu36I	CCTNAGG	2 cut(s)	295, 663
BsuI	GTATCC	2 cut(s)	275, 631
BsuRI	GGCC	4 cut(s)	213, 449, 948, 969
BtgI	CCRYGG	5 cut(s)	214, 229, 367, 949, 970
BtrI	CACGTC	1 cut(s)	956
BtsCI	GGATG	2 cut(s)	37, 589
Cac8I	GCNNGC	6 cut(s)	56, 60, 116, 120, 600, 909
CaiI	CAGNNNCTG	1 cut(s)	563
Cfr10I	RCCGGY	1 cut(s)	1021
Cfr13I	GGNCC	2 cut(s)	383, 447
CseI	GACGC	1 cut(s)	446
CsiI	ACCWGGT	1 cut(s)	385
CspCI	CAANNNNNGTGG	2 cut(s)	403, 438
DpnI	GATC	2 cut(s)	48, 502
DpnII	GATC	2 cut(s)	46, 500
DraIII	CACNNNGTG	1 cut(s)	203
DrdI	GACNNNNNNGTC	1 cut(s)	960
DseDI	GACNNNNNNGTC	1 cut(s)	960
EaeI	YGGCCR	2 cut(s)	946, 967
Eam1104I	CTCTTC	2 cut(s)	528, 858
EarI	CTCTTC	2 cut(s)	528, 858
Eco47I	GGWCC	1 cut(s)	383
Eco57I	CTGAAG	2 cut(s)	573, 923
Eco72I	CACGTG	1 cut(s)	200
Eco81I	CCTNAGG	2 cut(s)	295, 663
Eco88I	CYCGRG	1 cut(s)	704
Eco91I	GGTNACC	1 cut(s)	1001
EcoNI	CCTNNNNNAGG	1 cut(s)	745
EcoO109I	RGGNCCY	1 cut(s)	447
EcoO65I	GGTNACC	1 cut(s)	1001
EcoRII	CCWGG	2 cut(s)	385, 526
FaiI	YATR	1 cut(s)	693
Fnu4HI	GCNGC	4 cut(s)	543, 618, 1017, 1038
FokI	GGATG	2 cut(s)	44, 596
Fsp4HI	GCNGC	4 cut(s)	543, 618, 1017, 1038
FspBI	CTAG	1 cut(s)	984
GluI	GCNGC	4 cut(s)	543, 618, 1017, 1038
GsaI	CCCAGC	1 cut(s)	830
GsuI	CTGGAG	1 cut(s)	510
HaeIII	GGCC	4 cut(s)	213, 449, 948, 969
HapII	CCGG	1 cut(s)	1022
HgaI	GACGC	1 cut(s)	446
HindIII	AAGCTT	1 cut(s)	137
HinfI	GANTC	4 cut(s)	408, 679, 773, 992
HpaII	CCGG	1 cut(s)	1022
HphI	GGTGA	3 cut(s)	311, 383, 437
Hpy166II	GTNNAC	2 cut(s)	383, 953
Hpy188I	TCNGA	3 cut(s)	745, 835, 903
Hpy188III	TCNNGA	3 cut(s)	73, 99, 683
Hpy8I	GTNNAC	2 cut(s)	383, 953
Hpy99I	CGWCG	2 cut(s)	402, 462
HpyAV	CCTTC	7 cut(s)	296, 368, 373, 438, 574, 862, 871
HpyCH4III	ACNGT	5 cut(s)	230, 251, 643, 789, 1007
HpyCH4IV	ACGT	3 cut(s)	199, 436, 955
HpyCH4V	TGCA	2 cut(s)	781, 1019
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 623, 878, 1022
HpySE526I	ACGT	3 cut(s)	199, 436, 955
Kzo9I	GATC	2 cut(s)	46, 500
LmnI	GCTCC	3 cut(s)	136, 199, 355
Lsp1109I	GCAGC	4 cut(s)	529, 604, 1003, 1024
LweI	GCATC	5 cut(s)	28, 181, 613, 897, 1024
MabI	ACCWGGT	1 cut(s)	385
MaeI	CTAG	1 cut(s)	984
MaeII	ACGT	3 cut(s)	199, 436, 955
MaeIII	GTNAC	5 cut(s)	242, 260, 482, 494, 1001
MalI	GATC	2 cut(s)	48, 502
MboI	GATC	2 cut(s)	46, 500
MboII	GAAGA	6 cut(s)	88, 312, 545, 724, 808, 875
MfeI	CAATTG	1 cut(s)	1026
MflI	RGATCY	2 cut(s)	46, 500
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	2 cut(s)	514, 1026
MlyI	GAGTC	1 cut(s)	673
MmeI	TCCRAC	2 cut(s)	9, 568
MseI	TTAA	2 cut(s)	225, 734
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	1 cut(s)	1022
MspR9I	CCNGG	2 cut(s)	387, 528
MunI	CAATTG	1 cut(s)	1026
MvaI	CCWGG	2 cut(s)	387, 528
MwoI	GCNNNNNNNGC	4 cut(s)	128, 623, 878, 1022
NdeII	GATC	2 cut(s)	46, 500
NlaIV	GGNNCC	2 cut(s)	48, 361
NmuCI	GTSAC	2 cut(s)	482, 494
PaeR7I	CTCGAG	1 cut(s)	704
PcsI	WCGNNNNNNNCGW	2 cut(s)	946, 961
PfeI	GAWTC	3 cut(s)	408, 773, 992
PflMI	CCANNNNNTGG	2 cut(s)	203, 1055
PkrI	GCNGC	4 cut(s)	544, 619, 1018, 1039
PleI	GAGTC	1 cut(s)	673
PmaCI	CACGTG	1 cut(s)	200
PmlI	CACGTG	1 cut(s)	200
PpsI	GAGTC	1 cut(s)	673
Ppu21I	YACGTR	1 cut(s)	200
Psp6I	CCWGG	2 cut(s)	385, 526
PspCI	CACGTG	1 cut(s)	200
PspEI	GGTNACC	1 cut(s)	1001
PspFI	CCCAGC	1 cut(s)	826
PspGI	CCWGG	2 cut(s)	385, 526
PspN4I	GGNNCC	2 cut(s)	48, 361
PspPI	GGNCC	2 cut(s)	383, 447
PspXI	VCTCGAGB	1 cut(s)	704
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	2 cut(s)	46, 500
PvuII	CAGCTG	1 cut(s)	602
SaqAI	TTAA	2 cut(s)	225, 734
SatI	GCNGC	4 cut(s)	543, 618, 1017, 1038
Sau3AI	GATC	2 cut(s)	46, 500
Sau96I	GGNCC	2 cut(s)	383, 447
SchI	GAGTC	1 cut(s)	673
ScrFI	CCNGG	2 cut(s)	387, 528
SduI	GDGCHC	1 cut(s)	352
SexAI	ACCWGGT	1 cut(s)	385
SfaNI	GCATC	5 cut(s)	28, 181, 613, 897, 1024
Sfr274I	CTCGAG	1 cut(s)	704
SinI	GGWCC	1 cut(s)	383
SlaI	CTCGAG	1 cut(s)	704
SmlI	CTYRAG	2 cut(s)	165, 704
SmoI	CTYRAG	2 cut(s)	165, 704
Sse9I	AATT	2 cut(s)	514, 1026
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	1 cut(s)	984
StyD4I	CCNGG	2 cut(s)	385, 526
TaaI	ACNGT	5 cut(s)	230, 251, 643, 789, 1007
TaiI	ACGT	3 cut(s)	202, 439, 958
TaqI	TCGA	5 cut(s)	72, 110, 146, 442, 705
TasI	AATT	2 cut(s)	514, 1026
TfiI	GAWTC	3 cut(s)	408, 773, 992
Tru1I	TTAA	2 cut(s)	225, 734
Tru9I	TTAA	2 cut(s)	225, 734
TseFI	GTSAC	2 cut(s)	482, 494
TseI	GCWGC	4 cut(s)	542, 617, 1016, 1037
Tsp45I	GTSAC	2 cut(s)	482, 494
TspDTI	ATGAA	3 cut(s)	808, 825, 1026
TspGWI	ACGGA	2 cut(s)	356, 513
Van91I	CCANNNNNTGG	2 cut(s)	203, 1055
VpaK11BI	GGWCC	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	745
XhoI	CTCGAG	1 cut(s)	704
XspI	CTAG	1 cut(s)	984

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.