Rw7G018760

Plasminogen activator inhibitor 1 RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0001809
Physical Location & Seq
Forward (+)
20486964 .. 20490327
3364 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G018760.1

Sequence Viewer

Length: 888 bp
ATGGCGAGGGGCGTGGGTATGGTGGCCGTGGACGTGGTGGAGGGTGGTGGATATGGTGGATATAATCGGGATCGTGGCAGCGATGAGAACACTAATGGTTTCTCCGGTGGAGGGTACAGCAAACCCGAAGAGGGGGATAGGGATGTTTCTGAAAGGCGTGGTGGCTACGGGGGACCTCGTGGTTCCTTCCGTGGTGGACGCCGTGGTGGCTTTAGCAATGGAGAGGATGCAGAAGGGGAGCGTCCTCGGAGGACATTTGACCGTCACAGTGGCACTGGACGTGGAGCTAACTTTAAACGTGATGGAGCTGGTCGTGGGAATTGGGGAACTCCCACTGATGAAATTGCTTCGGAGATAGAGGCTGGCACTGAAGTTGAGAAGGATGTTGGTGCTGAGAAGCAGTTGGGAGAGAATGAGGCTGCTGATGCCAGCAAGGAGAATCCTGTGGAAGAGCCAGAAGAGAAGGAGCCTGAGGAAAAGGAGATGACTCTGGAAGAGTATGAGAAGGTTCTTGAAGAGAAGAGGAAGGCTCTGGCTGCACTTAAGACTGAGGAGAGAAAGGTTGACTTGGACAAAGAGTTGAAGTCTATGCAGCAGCTCTCAAGCAAGAAGACAAATGATGAAATATTTATCAAGCTGGGTTCTGAAAAGGATAAACGCAAGGAAGCTGCTGAGAAGGAGGAGAGAGCCAAGAAGTCTGTTAGCATAAACGAATTCCTGAAGCCTGCTGAAGGGGAGAACCAGAGGTTCTATGGTGGTCGTAATCGGGGACGTGGAGGCCGTGGTTCAAGAGGTGGAAACAGTGGAGGACATGGAGGTTACTCGAGCAATGTGCAAGCACCGCCCATTGCAGATCCTGGGCACTTTCCATCCCTTGGTGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HABP4_PAI-RBP1 Stm1_N

Protein Analysis

295

Amino Acids

31.89

Weight (kDa)

5.52

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HABP4_PAI-RBP1 PF04774 82 - 188 2.9e-30 Hyaluronan / mRNA binding family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 875
AciI CCGC 1 cut(s) 842
AclWI GGATC 2 cut(s) 78, 848
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 713
AcuI CTGAAG 3 cut(s) 390, 740, 750
AcyI GRCGYC 1 cut(s) 199
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 5 cut(s) 111, 131, 132, 731, 875
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 3 cut(s) 515, 583, 789
AjiI CACGTC 3 cut(s) 34, 281, 773
AjnI CCWGG 1 cut(s) 856
AluBI AGCT 5 cut(s) 287, 308, 598, 637, 668
AluI AGCT 5 cut(s) 287, 308, 598, 637, 668
AlwI GGATC 2 cut(s) 78, 848
AlwNI CAGNNNCTG 1 cut(s) 857
Ama87I CYCGRG 1 cut(s) 823
AoxI GGCC 2 cut(s) 24, 778
ApeKI GCWGC 6 cut(s) 78, 419, 536, 592, 595, 668
ApoI RAATTY 1 cut(s) 713
AspS9I GGNCC 1 cut(s) 173
AvaI CYCGRG 1 cut(s) 823
AvaII GGWCC 1 cut(s) 173
AxyI CCTNAGG 1 cut(s) 471
BaeGI GKGCMC 1 cut(s) 864
BauI CACGAG 1 cut(s) 177
BbsI GAAGAC 1 cut(s) 617
BbvI GCAGC 6 cut(s) 90, 406, 523, 604, 607, 655
BccI CCATC 2 cut(s) 296, 877
BceAI ACGGC 3 cut(s) 11, 186, 765
BcgI CGANNNNNNTGC 2 cut(s) 814, 848
BciT130I CCWGG 1 cut(s) 858
BfrI CTTAAG 1 cut(s) 542
BglI GCCNNNNNGGC 1 cut(s) 207
BisI GCNGC 6 cut(s) 79, 420, 537, 593, 596, 669
BlsI GCNGC 6 cut(s) 80, 421, 538, 594, 597, 670
Bme1390I CCNGG 1 cut(s) 858
Bme18I GGWCC 1 cut(s) 173
BmeT110I CYCGRG 1 cut(s) 823
BmgBI CACGTC 3 cut(s) 34, 281, 773
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 3 cut(s) 174, 184, 468
BmrFI CCNGG 1 cut(s) 858
BmsI GCATC 2 cut(s) 217, 415
BpiI GAAGAC 1 cut(s) 617
BplI GAGNNNNNCTC 2 cut(s) 514, 546
BpuEI CTTGAG 1 cut(s) 586
BsaHI GRCGYC 1 cut(s) 199
BsaJI CCNNGG 7 cut(s) 27, 190, 202, 245, 781, 857, 874
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 5 cut(s) 111, 131, 132, 731, 875
Bse1I ACTGG 1 cut(s) 280
Bse21I CCTNAGG 1 cut(s) 471
Bse3DI GCAATG 3 cut(s) 223, 835, 846
BseBI CCWGG 1 cut(s) 858
BseDI CCNNGG 7 cut(s) 27, 190, 202, 245, 781, 857, 874
BseGI GGATG 4 cut(s) 148, 232, 388, 869
BseLI CCNNNNNNNGG 5 cut(s) 111, 131, 132, 731, 875
BseMI GCAATG 3 cut(s) 223, 835, 846
BseMII CTCAG 4 cut(s) 384, 462, 540, 663
BseNI ACTGG 1 cut(s) 280
BseRI GAGGAG 2 cut(s) 566, 695
BseSI GKGCMC 1 cut(s) 864
BseXI GCAGC 6 cut(s) 90, 406, 523, 604, 607, 655
BseYI CCCAGC 1 cut(s) 637
BsgI GTGCAG 1 cut(s) 522
BshFI GGCC 2 cut(s) 26, 780
BsiHKCI CYCGRG 1 cut(s) 823
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 2 cut(s) 186, 783
BslI CCNNNNNNNGG 5 cut(s) 111, 131, 132, 731, 875
BsmFI GGGAC 2 cut(s) 186, 783
BsnI GGCC 2 cut(s) 26, 780
BsoBI CYCGRG 1 cut(s) 823
Bsp1286I GDGCHC 1 cut(s) 864
Bsp143I GATC 2 cut(s) 70, 853
BspACI CCGC 1 cut(s) 842
BspANI GGCC 2 cut(s) 26, 780
BspCNI CTCAG 4 cut(s) 385, 463, 541, 664
BspLI GGNNCC 3 cut(s) 174, 184, 468
BspPI GGATC 2 cut(s) 78, 848
BspQI GCTCTTC 1 cut(s) 444
BspTI CTTAAG 1 cut(s) 542
BsrDI GCAATG 3 cut(s) 223, 835, 846
BsrI ACTGG 1 cut(s) 280
BssECI CCNNGG 7 cut(s) 27, 190, 202, 245, 781, 857, 874
BssMI GATC 2 cut(s) 70, 853
BssNI GRCGYC 1 cut(s) 199
BssSI CACGAG 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 874
Bst2BI CACGAG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 858
Bst4CI ACNGT 3 cut(s) 263, 269, 803
Bst6I CTCTTC 6 cut(s) 123, 444, 453, 489, 510, 515
BstACI GRCGYC 1 cut(s) 199
BstAFI CTTAAG 1 cut(s) 542
BstC8I GCNNGC 4 cut(s) 364, 430, 726, 837
BstDEI CTNAG 4 cut(s) 393, 471, 549, 672
BstDSI CCRYGG 4 cut(s) 27, 190, 202, 781
BstENI CCTNNNNNAGG 1 cut(s) 729
BstF5I GGATG 4 cut(s) 148, 232, 388, 869
BstKTI GATC 2 cut(s) 73, 856
BstMBI GATC 2 cut(s) 70, 853
BstMWI GCNNNNNNNGC 4 cut(s) 207, 425, 536, 841
BstNI CCWGG 1 cut(s) 858
BstSCI CCNGG 1 cut(s) 856
BstSLI GKGCMC 1 cut(s) 864
BstV1I GCAGC 6 cut(s) 90, 406, 523, 604, 607, 655
BstV2I GAAGAC 1 cut(s) 617
BstX2I RGATCY 1 cut(s) 853
BstYI RGATCY 1 cut(s) 853
Bsu36I CCTNAGG 1 cut(s) 471
BsuRI GGCC 2 cut(s) 26, 780
BtgI CCRYGG 4 cut(s) 27, 190, 202, 781
BtgZI GCGATG 1 cut(s) 96
BtrI CACGTC 3 cut(s) 34, 281, 773
BtsCI GGATG 4 cut(s) 148, 232, 388, 869
BtsIMutI CAGTG 5 cut(s) 273, 274, 333, 366, 808
Cac8I GCNNGC 4 cut(s) 364, 430, 726, 837
CaiI CAGNNNCTG 1 cut(s) 857
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 2 cut(s) 207, 230
Csp6I GTAC 1 cut(s) 115
CviAII CATG 1 cut(s) 812
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 4 cut(s) 393, 471, 549, 672
DpnI GATC 2 cut(s) 72, 855
DpnII GATC 2 cut(s) 70, 853
DraI TTTAAA 1 cut(s) 295
EaeI YGGCCR 1 cut(s) 24
Eam1104I CTCTTC 6 cut(s) 123, 444, 453, 489, 510, 515
EarI CTCTTC 6 cut(s) 123, 444, 453, 489, 510, 515
Eco130I CCWWGG 1 cut(s) 874
Eco47I GGWCC 1 cut(s) 173
Eco57I CTGAAG 3 cut(s) 390, 740, 750
Eco81I CCTNAGG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 823
EcoNI CCTNNNNNAGG 1 cut(s) 729
EcoO109I RGGNCCY 1 cut(s) 173
EcoRI GAATTC 1 cut(s) 713
EcoRII CCWGG 1 cut(s) 856
EcoT14I CCWWGG 1 cut(s) 874
ErhI CCWWGG 1 cut(s) 874
FaeI CATG 1 cut(s) 815
FaiI YATR 8 cut(s) 20, 54, 63, 501, 590, 707, 753, 813
FalI AAGNNNNNCTT 2 cut(s) 551, 583
FaqI GGGAC 2 cut(s) 186, 783
FatI CATG 1 cut(s) 811
Fnu4HI GCNGC 6 cut(s) 79, 420, 537, 593, 596, 669
FokI GGATG 4 cut(s) 155, 239, 395, 856
Fsp4HI GCNGC 6 cut(s) 79, 420, 537, 593, 596, 669
GluI GCNGC 6 cut(s) 79, 420, 537, 593, 596, 669
GsaI CCCAGC 1 cut(s) 641
HaeIII GGCC 2 cut(s) 26, 780
HapII CCGG 1 cut(s) 105
HgaI GACGC 2 cut(s) 207, 230
Hin1I GRCGYC 1 cut(s) 199
Hin1II CATG 1 cut(s) 815
HincII GTYRAC 1 cut(s) 565
HindII GTYRAC 1 cut(s) 565
HinfI GANTC 2 cut(s) 439, 487
HpaII CCGG 1 cut(s) 105
Hpy166II GTNNAC 3 cut(s) 31, 197, 565
Hpy188I TCNGA 4 cut(s) 151, 249, 352, 646
Hpy188III TCNNGA 5 cut(s) 68, 491, 512, 718, 789
Hpy8I GTNNAC 3 cut(s) 31, 197, 565
HpyAV CCTTC 8 cut(s) 196, 227, 373, 457, 499, 520, 670, 725
HpyCH4III ACNGT 3 cut(s) 263, 269, 803
HpyCH4IV ACGT 4 cut(s) 33, 280, 298, 772
HpyCH4V TGCA 5 cut(s) 230, 539, 592, 835, 851
HpyF10VI GCNNNNNNNGC 4 cut(s) 207, 425, 536, 841
HpyF3I CTNAG 4 cut(s) 393, 471, 549, 672
HpySE526I ACGT 4 cut(s) 33, 280, 298, 772
Hsp92I GRCGYC 1 cut(s) 199
Hsp92II CATG 1 cut(s) 815
Kzo9I GATC 2 cut(s) 70, 853
LguI GCTCTTC 1 cut(s) 444
LmnI GCTCC 4 cut(s) 238, 284, 305, 466
Lsp1109I GCAGC 6 cut(s) 90, 406, 523, 604, 607, 655
LweI GCATC 2 cut(s) 217, 415
MaeII ACGT 4 cut(s) 33, 280, 298, 772
MaeIII GTNAC 2 cut(s) 263, 818
MalI GATC 2 cut(s) 72, 855
MboI GATC 2 cut(s) 70, 853
MboII GAAGA 7 cut(s) 140, 461, 470, 506, 527, 532, 622
MflI RGATCY 1 cut(s) 853
MhlI GDGCHC 1 cut(s) 864
MluCI AATT 3 cut(s) 319, 342, 713
MlyI GAGTC 1 cut(s) 481
MseI TTAA 2 cut(s) 294, 543
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 1 cut(s) 105
MspR9I CCNGG 1 cut(s) 858
MvaI CCWGG 1 cut(s) 858
MwoI GCNNNNNNNGC 4 cut(s) 207, 425, 536, 841
NdeII GATC 2 cut(s) 70, 853
NlaIII CATG 1 cut(s) 815
NlaIV GGNNCC 3 cut(s) 174, 184, 468
NmuCI GTSAC 1 cut(s) 263
PaeR7I CTCGAG 1 cut(s) 823
PciSI GCTCTTC 1 cut(s) 444
PcsI WCGNNNNNNNCGW 1 cut(s) 778
PfeI GAWTC 1 cut(s) 439
PflMI CCANNNNNTGG 1 cut(s) 875
PkrI GCNGC 6 cut(s) 80, 421, 538, 594, 597, 670
PleI GAGTC 1 cut(s) 481
PpsI GAGTC 1 cut(s) 481
PpuMI RGGWCCY 1 cut(s) 173
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 856
PspFI CCCAGC 1 cut(s) 637
PspGI CCWGG 1 cut(s) 856
PspN4I GGNNCC 3 cut(s) 174, 184, 468
PspPI GGNCC 1 cut(s) 173
PspPPI RGGWCCY 1 cut(s) 173
PspXI VCTCGAGB 1 cut(s) 823
PstNI CAGNNNCTG 1 cut(s) 857
PsuI RGATCY 1 cut(s) 853
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 444
SaqAI TTAA 2 cut(s) 294, 543
SatI GCNGC 6 cut(s) 79, 420, 537, 593, 596, 669
Sau3AI GATC 2 cut(s) 70, 853
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 1 cut(s) 481
ScrFI CCNGG 1 cut(s) 858
SduI GDGCHC 1 cut(s) 864
SfaNI GCATC 2 cut(s) 217, 415
Sfr274I CTCGAG 1 cut(s) 823
SinI GGWCC 1 cut(s) 173
SlaI CTCGAG 1 cut(s) 823
SmlI CTYRAG 3 cut(s) 542, 601, 823
SmoI CTYRAG 3 cut(s) 542, 601, 823
Sse9I AATT 3 cut(s) 319, 342, 713
SsiI CCGC 1 cut(s) 842
SspI AATATT 1 cut(s) 627
StyD4I CCNGG 1 cut(s) 856
StyI CCWWGG 1 cut(s) 874
TaaI ACNGT 3 cut(s) 263, 269, 803
TaiI ACGT 4 cut(s) 36, 283, 301, 775
TaqI TCGA 1 cut(s) 824
TasI AATT 3 cut(s) 319, 342, 713
TfiI GAWTC 1 cut(s) 439
Tru1I TTAA 2 cut(s) 294, 543
Tru9I TTAA 2 cut(s) 294, 543
TscAI CASTG 5 cut(s) 274, 280, 340, 373, 808
TseFI GTSAC 1 cut(s) 263
TseI GCWGC 6 cut(s) 78, 419, 536, 592, 595, 668
Tsp45I GTSAC 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 354, 636
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 5 cut(s) 274, 280, 340, 373, 808
Van91I CCANNNNNTGG 1 cut(s) 875
Vha464I CTTAAG 1 cut(s) 542
VpaK11BI GGWCC 1 cut(s) 173
XagI CCTNNNNNAGG 1 cut(s) 729
XapI RAATTY 1 cut(s) 713
XcmI CCANNNNNNNNNTGG 1 cut(s) 749
XhoI CTCGAG 1 cut(s) 823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.