Rroxscaffold_4G00307320

Plasminogen activator inhibitor 1 RNA-binding

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
28510285 .. 28513780
3496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00307320.1

Sequence Viewer

Length: 1170 bp
ATGGCGACCATGAACCCGTTTGATTTGTTGGGCGACGATGATGCCGAGGACCCTTCGCTGCTGGTCGCGGCTCACCAACAGAAGCTCGCTGCCGCACCCAAGAAAGCTCAGGCTCAGCCCAACAAGCCCGGTCTCGACGCCAAGCCGGCCAAGTTGCCTTCCAAGCCTGCCCCTCCTTCTCAGGCTGTGAGGGATTCAAAGAATGAAGCTGGTCGTGGAGGCCGCGGGGGTGGACGTGGATATGGGCGTGGCCGTGGCGGTGGTGGTGGCTACAGTCGTGATTCAGCCAATAATGAAAACAACAGTGGGTACAATCGTGAATCAGCCCCTGCTGGTCAGGGTGCTTTTGAGGATGCACCTCCTAAAAGGCGTTTCTCTGGTGGGGATGGTGATGGAAGGCCATCTGAAAGGCGTGGCTATGGGGGAGATGGAGAAGGGAGGACGACTGAAAGGCGTAGCTATGGTGGACCACGCGGTTCTTACCATGGTGGTCGCCGTGGTGGTTTTGGGAATGGGGAAGTTGGTGATGAGGAGCGCCCGCGGAGGACCCATGAACGTCGTAGTGGGACTGGACGCGGAAATGAACTCAAGCGTGAAGGTTCTGGTCGTGGAAACTGGGGATCACAAACTGATGAATTTCCTGAGGTGACTGAAGACGGACTCAATGCAACTGAAAAAATTTTGGGCGAAGAAAAGCCTGTGGGAGTGGTAGATGCAGCAGATGACAGCAAAGAGACCCCTGCCAATGAACCTGAAGAAAAGGAACCTGAGGAGAAGGAAATGACACTTGAAGAGTATGAGAAGGTGCTTGAAGAGAAAAGGAAGGCCCTGCAGGCACTTAAGACTGAAGAAAGAAAGGTTGATACTAAGGAATTTGAATCACTACAACAGCTTTCAAACAAGAAAGGGAATGATGATATCTTCATTAAATTGGGATCTGACAAGGATAAGAAGAAAGAGTCTGCTGAGAAGGAAGAAAAAGCCAAAAAGTCTGTCAGTATCAATGAGTTCTTGAAGCCAGCAGAAGGAGAAAGGTTCTCTTACCCATCTCGTGGCCGTGGCCGTGGTCGTGGTTCCCGGGGAGGGTTTAGCAGCAACTATTCCCAAAGCAGTGTGGAAGCCCCACCAATTGAAGATCCTTCTCACTTCCCAACCTTGGGTGGCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

389

Amino Acids

41.98

Weight (kDa)

6.55

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stm1_N PF09598 1 - 77 5e-23 Stm1
HABP4_PAI-RBP1 PF04774 180 - 287 2.1e-26 Hyaluronan / mRNA binding family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1052
AccII CGCG 5 cut(s) 68, 225, 474, 541, 576
AciI CCGC 9 cut(s) 68, 93, 223, 225, 258, 474, 539, 541, 576
AclWI GGATC 3 cut(s) 628, 943, 1130
AcoI YGGCCR 4 cut(s) 147, 250, 1054, 1060
AcsI RAATTY 3 cut(s) 635, 678, 872
AcuI CTGAAG 3 cut(s) 672, 774, 867
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 311
AfiI CCNNNNNNNGG 5 cut(s) 1025, 1052, 1083, 1156, 1157
AflII CTTAAG 1 cut(s) 839
AgsI TTSAA 7 cut(s) 198, 791, 812, 878, 897, 1015, 1133
AjiI CACGTC 1 cut(s) 236
AluBI AGCT 5 cut(s) 85, 107, 209, 459, 892
AluI AGCT 5 cut(s) 85, 107, 209, 459, 892
Alw26I GTCTC 2 cut(s) 137, 728
AlwI GGATC 3 cut(s) 628, 943, 1130
AlwNI CAGNNNCTG 1 cut(s) 329
Ama87I CYCGRG 1 cut(s) 1077
AoxI GGCC 7 cut(s) 147, 220, 250, 398, 825, 1054, 1060
ApeKI GCWGC 4 cut(s) 58, 89, 716, 1092
ApoI RAATTY 3 cut(s) 635, 678, 872
ArsI GACNNNNNNTTYG 2 cut(s) 978, 1010
AspLEI GCGC 1 cut(s) 537
AspS9I GGNCC 4 cut(s) 49, 467, 546, 826
AsuC2I CCSGG 3 cut(s) 129, 1078, 1079
AsuHPI GGTGA 4 cut(s) 65, 401, 536, 658
AvaI CYCGRG 1 cut(s) 1077
AvaII GGWCC 3 cut(s) 49, 467, 546
AxyI CCTNAGG 2 cut(s) 642, 768
BaeI ACNNNNGTAYC 2 cut(s) 301, 334
BauI CACGAG 1 cut(s) 1050
BbsI GAAGAC 1 cut(s) 660
BbvI GCAGC 4 cut(s) 45, 76, 728, 1104
BccI CCATC 5 cut(s) 380, 386, 409, 422, 1054
BceAI ACGGC 4 cut(s) 237, 480, 1041, 1047
BcgI CGANNNNNNTGC 2 cut(s) 23, 57
BcnI CCSGG 3 cut(s) 129, 1078, 1079
BcoDI GTCTC 2 cut(s) 137, 728
BfmI CTRYAG 2 cut(s) 271, 830
BfoI RGCGCY 1 cut(s) 538
BfrI CTTAAG 1 cut(s) 839
BglI GCCNNNNNGGC 2 cut(s) 146, 833
BisI GCNGC 7 cut(s) 59, 69, 90, 93, 223, 717, 1093
BlpI GCTNAGC 1 cut(s) 114
BlsI GCNGC 7 cut(s) 60, 70, 91, 94, 224, 718, 1094
Bme1390I CCNGG 3 cut(s) 129, 1078, 1079
Bme18I GGWCC 3 cut(s) 49, 467, 546
BmeT110I CYCGRG 1 cut(s) 1077
BmgBI CACGTC 1 cut(s) 236
BmgT120I GGNCC 4 cut(s) 49, 467, 546, 826
BmiI GGNNCC 4 cut(s) 51, 548, 765, 1075
BmrFI CCNGG 3 cut(s) 129, 1078, 1079
BmrI ACTGGG 1 cut(s) 625
BmsI GCATC 3 cut(s) 31, 343, 703
BmuI ACTGGG 1 cut(s) 625
BpiI GAAGAC 1 cut(s) 660
Bpu10I CCTNAGC 1 cut(s) 108
Bpu1102I GCTNAGC 1 cut(s) 114
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 3 cut(s) 129, 1078, 1079
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 2 cut(s) 137, 728
Bsc4I CCNNNNNNNGG 5 cut(s) 1025, 1052, 1083, 1156, 1157
Bse118I RCCGGY 1 cut(s) 145
Bse1I ACTGG 2 cut(s) 574, 620
Bse21I CCTNAGG 2 cut(s) 642, 768
BseGI GGATG 2 cut(s) 358, 391
BseLI CCNNNNNNNGG 5 cut(s) 1025, 1052, 1083, 1156, 1157
BseMII CTCAG 6 cut(s) 122, 128, 194, 633, 759, 957
BseNI ACTGG 2 cut(s) 574, 620
BseRI GAGGAG 2 cut(s) 545, 785
BseXI GCAGC 4 cut(s) 45, 76, 728, 1104
Bsh1236I CGCG 5 cut(s) 68, 225, 474, 541, 576
BshFI GGCC 7 cut(s) 149, 222, 252, 400, 827, 1056, 1062
BsiHKCI CYCGRG 1 cut(s) 1077
BsiSI CCGG 3 cut(s) 129, 146, 1078
BslFI GGGAC 1 cut(s) 580
BslI CCNNNNNNNGG 5 cut(s) 1025, 1052, 1083, 1156, 1157
BsmAI GTCTC 2 cut(s) 137, 728
BsmFI GGGAC 1 cut(s) 580
BsnI GGCC 7 cut(s) 149, 222, 252, 400, 827, 1056, 1062
Bso31I GGTCTC 2 cut(s) 137, 728
BsoBI CYCGRG 1 cut(s) 1077
Bsp143I GATC 3 cut(s) 620, 935, 1135
Bsp1720I GCTNAGC 1 cut(s) 114
Bsp19I CCATGG 1 cut(s) 484
BspACI CCGC 9 cut(s) 68, 93, 223, 225, 258, 474, 539, 541, 576
BspANI GGCC 7 cut(s) 149, 222, 252, 400, 827, 1056, 1062
BspCNI CTCAG 6 cut(s) 121, 127, 193, 634, 760, 958
BspFNI CGCG 5 cut(s) 68, 225, 474, 541, 576
BspLI GGNNCC 4 cut(s) 51, 548, 765, 1075
BspMAI CTGCAG 1 cut(s) 834
BspPI GGATC 3 cut(s) 628, 943, 1130
BspTI CTTAAG 1 cut(s) 839
BspTNI GGTCTC 2 cut(s) 137, 728
BsrFI RCCGGY 1 cut(s) 145
BsrI ACTGG 2 cut(s) 574, 620
BssAI RCCGGY 1 cut(s) 145
BssMI GATC 3 cut(s) 620, 935, 1135
BssNI GRCGYC 1 cut(s) 138
BssSI CACGAG 1 cut(s) 1050
BssT1I CCWWGG 2 cut(s) 484, 1155
Bst2BI CACGAG 1 cut(s) 1050
Bst4CI ACNGT 2 cut(s) 275, 305
Bst6I CTCTTC 2 cut(s) 786, 807
BstACI GRCGYC 1 cut(s) 138
BstAFI CTTAAG 1 cut(s) 839
BstC8I GCNNGC 6 cut(s) 87, 147, 168, 539, 834, 1020
BstDEI CTNAG 7 cut(s) 108, 114, 180, 642, 768, 867, 966
BstDSI CCRYGG 7 cut(s) 223, 253, 484, 496, 539, 1057, 1063
BstF5I GGATG 2 cut(s) 358, 391
BstFNI CGCG 5 cut(s) 68, 225, 474, 541, 576
BstH2I RGCGCY 1 cut(s) 538
BstHHI GCGC 1 cut(s) 537
BstKTI GATC 3 cut(s) 623, 938, 1138
BstMAI GTCTC 2 cut(s) 137, 728
BstMBI GATC 3 cut(s) 620, 935, 1135
BstMWI GCNNNNNNNGC 4 cut(s) 124, 146, 163, 833
BstSCI CCNGG 3 cut(s) 127, 1076, 1077
BstSFI CTRYAG 2 cut(s) 271, 830
BstUI CGCG 5 cut(s) 68, 225, 474, 541, 576
BstV1I GCAGC 4 cut(s) 45, 76, 728, 1104
BstV2I GAAGAC 1 cut(s) 660
BstX2I RGATCY 2 cut(s) 935, 1135
BstYI RGATCY 2 cut(s) 935, 1135
Bsu36I CCTNAGG 2 cut(s) 642, 768
BsuRI GGCC 7 cut(s) 149, 222, 252, 400, 827, 1056, 1062
BtgI CCRYGG 7 cut(s) 223, 253, 484, 496, 539, 1057, 1063
BtrI CACGTC 1 cut(s) 236
BtsCI GGATG 2 cut(s) 358, 391
BtsI GCAGTG 1 cut(s) 1117
BtsIMutI CAGTG 2 cut(s) 310, 1117
Cac8I GCNNGC 6 cut(s) 87, 147, 168, 539, 834, 1020
CaiI CAGNNNCTG 1 cut(s) 329
CfoI GCGC 1 cut(s) 537
Cfr10I RCCGGY 1 cut(s) 145
Cfr13I GGNCC 4 cut(s) 49, 467, 546, 826
Cfr42I CCGCGG 2 cut(s) 226, 542
Cfr9I CCCGGG 1 cut(s) 1077
CseI GACGC 2 cut(s) 146, 582
Csp6I GTAC 1 cut(s) 310
CviAII CATG 3 cut(s) 10, 485, 551
CviQI GTAC 1 cut(s) 310
DdeI CTNAG 7 cut(s) 108, 114, 180, 642, 768, 867, 966
DpnI GATC 3 cut(s) 622, 937, 1137
DpnII GATC 3 cut(s) 620, 935, 1135
EaeI YGGCCR 4 cut(s) 147, 250, 1054, 1060
Eam1104I CTCTTC 2 cut(s) 786, 807
EarI CTCTTC 2 cut(s) 786, 807
Eco130I CCWWGG 2 cut(s) 484, 1155
Eco31I GGTCTC 2 cut(s) 137, 728
Eco32I GATATC 1 cut(s) 919
Eco47I GGWCC 3 cut(s) 49, 467, 546
Eco57I CTGAAG 3 cut(s) 672, 774, 867
Eco81I CCTNAGG 2 cut(s) 642, 768
Eco88I CYCGRG 1 cut(s) 1077
EcoO109I RGGNCCY 3 cut(s) 49, 546, 826
EcoRV GATATC 1 cut(s) 919
EcoT14I CCWWGG 2 cut(s) 484, 1155
ErhI CCWWGG 2 cut(s) 484, 1155
FaeI CATG 3 cut(s) 13, 488, 554
FaiI YATR 7 cut(s) 11, 243, 420, 462, 486, 552, 798
FalI AAGNNNNNCTT 2 cut(s) 1024, 1056
FaqI GGGAC 1 cut(s) 580
FatI CATG 3 cut(s) 9, 484, 550
FauI CCCGC 2 cut(s) 218, 546
Fnu4HI GCNGC 7 cut(s) 59, 69, 90, 93, 223, 717, 1093
FokI GGATG 2 cut(s) 365, 398
Fsp4HI GCNGC 7 cut(s) 59, 69, 90, 93, 223, 717, 1093
GlaI GCGC 1 cut(s) 536
GluI GCNGC 7 cut(s) 59, 69, 90, 93, 223, 717, 1093
HaeII RGCGCY 1 cut(s) 538
HaeIII GGCC 7 cut(s) 149, 222, 252, 400, 827, 1056, 1062
HapII CCGG 3 cut(s) 129, 146, 1078
HgaI GACGC 2 cut(s) 146, 582
HhaI GCGC 1 cut(s) 537
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 3 cut(s) 13, 488, 554
Hin6I GCGC 1 cut(s) 535
HinP1I GCGC 1 cut(s) 535
HinfI GANTC 6 cut(s) 194, 281, 320, 660, 878, 959
HpaII CCGG 3 cut(s) 129, 146, 1078
HphI GGTGA 4 cut(s) 65, 401, 536, 658
Hpy166II GTNNAC 2 cut(s) 233, 467
Hpy188I TCNGA 2 cut(s) 406, 940
Hpy188III TCNNGA 5 cut(s) 134, 278, 317, 641, 1012
Hpy8I GTNNAC 2 cut(s) 233, 467
Hpy99I CGWCG 3 cut(s) 38, 140, 561
HpyCH4III ACNGT 2 cut(s) 275, 305
HpyCH4IV ACGT 2 cut(s) 235, 556
HpyCH4V TGCA 4 cut(s) 356, 668, 716, 832
HpyF10VI GCNNNNNNNGC 4 cut(s) 124, 146, 163, 833
HpyF3I CTNAG 7 cut(s) 108, 114, 180, 642, 768, 867, 966
HpySE526I ACGT 2 cut(s) 235, 556
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 3 cut(s) 13, 488, 554
HspAI GCGC 1 cut(s) 535
KroI GCCGGC 1 cut(s) 145
KroNI GCCGGC 1 cut(s) 147
KspI CCGCGG 2 cut(s) 226, 542
Kzo9I GATC 3 cut(s) 620, 935, 1135
LmnI GCTCC 1 cut(s) 532
Lsp1109I GCAGC 4 cut(s) 45, 76, 728, 1104
LweI GCATC 3 cut(s) 31, 343, 703
MaeII ACGT 2 cut(s) 235, 556
MaeIII GTNAC 1 cut(s) 646
MalI GATC 3 cut(s) 622, 937, 1137
MboI GATC 3 cut(s) 620, 935, 1135
MfeI CAATTG 1 cut(s) 1128
MflI RGATCY 2 cut(s) 935, 1135
MluCI AATT 5 cut(s) 635, 678, 872, 929, 1128
MlyI GAGTC 2 cut(s) 654, 968
MroNI GCCGGC 1 cut(s) 145
MseI TTAA 2 cut(s) 840, 927
MspA1I CMGCKG 2 cut(s) 225, 541
MspCI CTTAAG 1 cut(s) 839
MspI CCGG 3 cut(s) 129, 146, 1078
MspR9I CCNGG 3 cut(s) 129, 1078, 1079
MunI CAATTG 1 cut(s) 1128
MvnI CGCG 5 cut(s) 68, 225, 474, 541, 576
MwoI GCNNNNNNNGC 4 cut(s) 124, 146, 163, 833
NaeI GCCGGC 1 cut(s) 147
NciI CCSGG 3 cut(s) 129, 1078, 1079
NcoI CCATGG 1 cut(s) 484
NdeII GATC 3 cut(s) 620, 935, 1135
NgoMIV GCCGGC 1 cut(s) 145
NlaIII CATG 3 cut(s) 13, 488, 554
NlaIV GGNNCC 4 cut(s) 51, 548, 765, 1075
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 646
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PdiI GCCGGC 1 cut(s) 147
PfeI GAWTC 4 cut(s) 194, 281, 320, 878
PflMI CCANNNNNTGG 1 cut(s) 1052
PkrI GCNGC 7 cut(s) 60, 70, 91, 94, 224, 718, 1094
PleI GAGTC 2 cut(s) 654, 967
PpsI GAGTC 2 cut(s) 654, 967
PpuMI RGGWCCY 2 cut(s) 49, 546
Psp5II RGGWCCY 2 cut(s) 49, 546
PspN4I GGNNCC 4 cut(s) 51, 548, 765, 1075
PspPI GGNCC 4 cut(s) 49, 467, 546, 826
PspPPI RGGWCCY 2 cut(s) 49, 546
PstI CTGCAG 1 cut(s) 834
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 2 cut(s) 935, 1135
RsaI GTAC 1 cut(s) 311
RsaNI GTAC 1 cut(s) 310
SacII CCGCGG 2 cut(s) 226, 542
SaqAI TTAA 2 cut(s) 840, 927
SatI GCNGC 7 cut(s) 59, 69, 90, 93, 223, 717, 1093
Sau3AI GATC 3 cut(s) 620, 935, 1135
Sau96I GGNCC 4 cut(s) 49, 467, 546, 826
SbfI CCTGCAGG 1 cut(s) 834
SchI GAGTC 2 cut(s) 654, 968
ScrFI CCNGG 3 cut(s) 129, 1078, 1079
SdaI CCTGCAGG 1 cut(s) 834
SfaNI GCATC 3 cut(s) 31, 343, 703
SfcI CTRYAG 2 cut(s) 271, 830
Sfr303I CCGCGG 2 cut(s) 226, 542
SgrBI CCGCGG 2 cut(s) 226, 542
SinI GGWCC 3 cut(s) 49, 467, 546
SmaI CCCGGG 1 cut(s) 1079
SmlI CTYRAG 2 cut(s) 587, 839
SmoI CTYRAG 2 cut(s) 587, 839
Sse8387I CCTGCAGG 1 cut(s) 834
Sse9I AATT 5 cut(s) 635, 678, 872, 929, 1128
SsiI CCGC 9 cut(s) 68, 93, 223, 225, 258, 474, 539, 541, 576
StyD4I CCNGG 3 cut(s) 127, 1076, 1077
StyI CCWWGG 2 cut(s) 484, 1155
TaaI ACNGT 2 cut(s) 275, 305
TaiI ACGT 2 cut(s) 238, 559
TaqI TCGA 1 cut(s) 135
TasI AATT 5 cut(s) 635, 678, 872, 929, 1128
TauI GCSGC 3 cut(s) 71, 95, 225
TfiI GAWTC 4 cut(s) 194, 281, 320, 878
Tru1I TTAA 2 cut(s) 840, 927
Tru9I TTAA 2 cut(s) 840, 927
TscAI CASTG 2 cut(s) 310, 1117
TseFI GTSAC 1 cut(s) 646
TseI GCWGC 4 cut(s) 58, 89, 716, 1092
Tsp45I GTSAC 1 cut(s) 646
TspDTI ATGAA 8 cut(s) 26, 219, 309, 567, 597, 648, 762, 913
TspGWI ACGGA 1 cut(s) 672
TspMI CCCGGG 1 cut(s) 1077
TspRI CASTG 2 cut(s) 310, 1117
Van91I CCANNNNNTGG 1 cut(s) 1052
Vha464I CTTAAG 1 cut(s) 839
VpaK11BI GGWCC 3 cut(s) 49, 467, 546
XapI RAATTY 3 cut(s) 635, 678, 872
XmaI CCCGGG 1 cut(s) 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.