Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0001809

Physical Location & Seq

Genomic Coordinates Reverse (-)

6485943 .. 6489221

Gene Structure 3279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G060200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGCAACCGCGAACCCTTTCGATCTCTTGGGTGATGACGACAACGAGGACCCAAGTCAACTTCTCGCTGCTCAGCGGCAGAAGCTGCCTCCGCCTCAGCCCAAGAAGCCCCAGCAGGCCCAACCTGCTCAGCCCGCTAAGCTTCCTTCCAAGCCACTTCCTCCTACTCAAGCTGTGAGGGAAGGGAAGTATGAAACTGGCCGTGGAGGGGGCCGTGGTGGTGGACGCGGGTTTGGCCGTGGACGTGGTGGAGGTGGTGGTGGATTTCCTCGAGATCCAATCAGCAATGAGAGCGCTAATGGTGTTTATGGTGGATACAGAGCACCAGAAGAGGGAGATACAGGGAAACCTTCTGAAAGACGTGGTGGCTACGGTGGGCCTCGTGGTTCCTTCCGTGGTGGGCGTCGTAGTGGTTTTAACAATGGGGACGATGCAGAAGGGGAACGCCCTCGGAGGGTATTTGATCGCCGCAGTGGTACAGGACATGGAAGTGAGTTTAAACGTGATGGGGCTGGTCGTGGGAATTGGGGAACACCCACCGATGACATTGCTCAGGAGACTGAAGAGCCTGGAACTGAAATTGAGAAGAATGTTGGTGCTGAGAAGCAGTTGGGAGAGAATGAGGCTGCTGATGCCAACAAGGAGAATACTGTGAATGAGTCGGAAGAGAAGGAGCCGGAGGAGAAGGAGATGACTTTAGAAGAGTATGAGAAGGTGCTTGAAGAGAAGAGGAAGGCTCTGCTTGCATTGAAGACTGAGGAAAGAAAGGTTGATTTGGACAAAGAGTTGAAGTCCATGCAGCAGCTTTCAAACAAGAAGGAAAACAATGACATCTTTATCAAACTGGGTTCTGAAAAGGATAAGCGCAAAGAGGCAGCTGAGAAAGAAGAGAGAGCCAAGAAGTCTGTTAGCATAAATGAGTTTCTGAAGCCAGCTGAAGGGGAGAGGTACTATGGTGGTCGTGGTCGAGGCCGTGGCCGTGGTCCACGAGGTGGATACAGTGGCGGACCCGGAGGTTACTCAGGCAGTGCAGCACCCTCCATTGAAGACCCTGGGCAGTTCCCGACTCTGGGTGGTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HABP4_PAI-RBP1 Stm1_N

Protein Analysis

361

Amino Acids

38.81

Weight (kDa)

6.76

Isoelectric Point (pI)

46.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16830 AT4G16830 AT4G16830
fragaria_vesca	FvH4_5g20020 FvH4_5g20020 FvH4_5g20020 FvH4_7g10280
malus_domestica	MD02G1213500.v1.1 MD04G1050100.v1.1 MD06G1049800.v1.1 MD07G1109500.v1.1
prunus_persica	Prupe.2G132500_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1
pyrus_communis	pycom04g04410 pycom06g04220 pycom07g09400 pycom12646g00030
rosa_chinensis	RchiOBHm_Chr1g0348031 RchiOBHm_Chr7g0204831 RchiOBHm_Chr7g0204851
rosa_laevigata	RLG00000003428 RLG00000028697
rosa_multiflora	Rmu_sc0002180.1_g000016 Rmu_sc0002180.1_g000023 Rmu_ssc0000263.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252730 Rroxscaffold_4G00307320
rosa_rugosa	Rorug01G0190700 Rorug01G0190800 Rorug07G0086000 Rorug07G0086000 Rorug07G0086100
rosa_samantha	Rh1AG209300 Rh1BG174300 Rh1CG193700 Rh1DG204100 Rh7AG216500 Rh7AG216700 Rh7BG213600 Rh7CG230000 Rh7DG224100 Rh7DG224300
rosa_wichuraiana	Rw1G017440 Rw7G018760 Rw7G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	133
AccB7I	CCANNNNNTGG	1 cut(s)	992
AccII	CGCG	2 cut(s)	11, 228
AciI	CCGC	7 cut(s)	9, 76, 92, 135, 228, 469, 1005
AclWI	GGATC	1 cut(s)	269
AcoI	YGGCCR	3 cut(s)	199, 235, 976
AcuI	CTGAAG	3 cut(s)	582, 947, 957
AcyI	GRCGYC	1 cut(s)	403
AdeI	CACNNNGTG	1 cut(s)	992
AfaI	GTAC	2 cut(s)	478, 950
AfeI	AGCGCT	1 cut(s)	295
AfiI	CCNNNNNNNGG	7 cut(s)	208, 332, 454, 938, 992, 1069, 1070
AgsI	TTSAA	5 cut(s)	722, 751, 790, 810, 1046
AjiI	CACGTC	2 cut(s)	245, 362
AjnI	CCWGG	2 cut(s)	568, 1051
AluBI	AGCT	6 cut(s)	85, 142, 173, 805, 878, 935
AluI	AGCT	6 cut(s)	85, 142, 173, 805, 878, 935
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	551
AlwI	GGATC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	85
Ama87I	CYCGRG	1 cut(s)	270
Aor51HI	AGCGCT	1 cut(s)	295
AoxI	GGCC	7 cut(s)	117, 199, 211, 235, 377, 970, 976
ApeKI	GCWGC	7 cut(s)	68, 85, 626, 799, 802, 875, 1031
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	296, 867
AspS9I	GGNCC	6 cut(s)	49, 118, 211, 377, 983, 1007
AsuC2I	CCSGG	1 cut(s)	1011
AsuHPI	GGTGA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	270
AvaII	GGWCC	3 cut(s)	49, 983, 1007
BaeI	ACNNNNGTAYC	2 cut(s)	940, 973
BauI	CACGAG	2 cut(s)	381, 987
BbsI	GAAGAC	2 cut(s)	758, 1053
Bbv12I	GWGCWC	1 cut(s)	325
BbvCI	CCTCAGC	1 cut(s)	96
BbvI	GCAGC	7 cut(s)	55, 72, 613, 811, 814, 887, 1043
BccI	CCATC	1 cut(s)	500
BceAI	ACGGC	5 cut(s)	186, 198, 222, 957, 963
BcgI	CGANNNNNNTGC	2 cut(s)	530, 564
BciT130I	CCWGG	2 cut(s)	570, 1053
BciVI	GTATCC	2 cut(s)	308, 989
BcnI	CCSGG	1 cut(s)	1011
BcoDI	GTCTC	1 cut(s)	551
BfoI	RGCGCY	1 cut(s)	297
BfuAI	ACCTGC	1 cut(s)	133
BfuI	GTATCC	2 cut(s)	308, 989
BisI	GCNGC	9 cut(s)	69, 77, 86, 469, 627, 800, 803, 876, 1032
BlpI	GCTNAGC	3 cut(s)	72, 129, 138
BlsI	GCNGC	9 cut(s)	70, 78, 87, 470, 628, 801, 804, 877, 1033
Bme1390I	CCNGG	3 cut(s)	570, 1011, 1053
Bme18I	GGWCC	3 cut(s)	49, 983, 1007
BmeT110I	CYCGRG	1 cut(s)	270
BmgBI	CACGTC	2 cut(s)	245, 362
BmgT120I	GGNCC	6 cut(s)	49, 118, 211, 377, 983, 1007
BmiI	GGNNCC	5 cut(s)	51, 212, 388, 675, 1009
BmrFI	CCNGG	3 cut(s)	570, 1011, 1053
BmrI	ACTGGG	1 cut(s)	854
BmsI	GCATC	2 cut(s)	421, 622
BmuI	ACTGGG	1 cut(s)	854
BoxI	GACNNNNGTC	1 cut(s)	54
BpiI	GAAGAC	2 cut(s)	758, 1053
BplI	GAGNNNNNCTC	2 cut(s)	721, 753
Bpu10I	CCTNAGC	2 cut(s)	96, 552
Bpu1102I	GCTNAGC	3 cut(s)	72, 129, 138
BpuEI	CTTGAG	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	1011
BsaHI	GRCGYC	1 cut(s)	403
BsaJI	CCNNGG	9 cut(s)	202, 214, 238, 394, 449, 973, 979, 1051, 1052
Bsc4I	CCNNNNNNNGG	7 cut(s)	208, 332, 454, 938, 992, 1069, 1070
Bse1I	ACTGG	2 cut(s)	202, 849
Bse3DI	GCAATG	2 cut(s)	292, 546
BseBI	CCWGG	2 cut(s)	570, 1053
BseDI	CCNNGG	9 cut(s)	202, 214, 238, 394, 449, 973, 979, 1051, 1052
BseLI	CCNNNNNNNGG	7 cut(s)	208, 332, 454, 938, 992, 1069, 1070
BseMI	GCAATG	2 cut(s)	292, 546
BseMII	CTCAG	8 cut(s)	86, 110, 143, 566, 591, 747, 870, 1035
BseNI	ACTGG	2 cut(s)	202, 849
BseRI	GAGGAG	1 cut(s)	695
BseXI	GCAGC	7 cut(s)	55, 72, 613, 811, 814, 887, 1043
BseYI	CCCAGC	1 cut(s)	111
BsgI	GTGCAG	1 cut(s)	1050
Bsh1236I	CGCG	2 cut(s)	11, 228
BshFI	GGCC	7 cut(s)	119, 201, 213, 237, 379, 972, 978
BsiHKAI	GWGCWC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	270
BsiSI	CCGG	2 cut(s)	677, 1011
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	7 cut(s)	208, 332, 454, 938, 992, 1069, 1070
BsmAI	GTCTC	1 cut(s)	551
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	7 cut(s)	119, 201, 213, 237, 379, 972, 978
BsoBI	CYCGRG	1 cut(s)	270
Bsp1286I	GDGCHC	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	22, 274, 463
Bsp1720I	GCTNAGC	3 cut(s)	72, 129, 138
BspACI	CCGC	7 cut(s)	9, 76, 92, 135, 228, 469, 1005
BspANI	GGCC	7 cut(s)	119, 201, 213, 237, 379, 972, 978
BspCNI	CTCAG	8 cut(s)	85, 109, 142, 565, 592, 748, 871, 1034
BspFNI	CGCG	2 cut(s)	11, 228
BspLI	GGNNCC	5 cut(s)	51, 212, 388, 675, 1009
BspMI	ACCTGC	1 cut(s)	133
BspPI	GGATC	1 cut(s)	269
BspQI	GCTCTTC	1 cut(s)	558
BsrDI	GCAATG	2 cut(s)	292, 546
BsrI	ACTGG	2 cut(s)	202, 849
BssECI	CCNNGG	9 cut(s)	202, 214, 238, 394, 449, 973, 979, 1051, 1052
BssMI	GATC	3 cut(s)	22, 274, 463
BssNI	GRCGYC	1 cut(s)	403
BssSI	CACGAG	2 cut(s)	381, 987
Bst2BI	CACGAG	2 cut(s)	381, 987
Bst2UI	CCWGG	2 cut(s)	570, 1053
Bst4CI	ACNGT	3 cut(s)	374, 652, 1001
Bst6I	CTCTTC	7 cut(s)	324, 558, 660, 696, 717, 722, 882
BstACI	GRCGYC	1 cut(s)	403
BstAPI	GCANNNNNTGC	1 cut(s)	85
BstC8I	GCNNGC	4 cut(s)	117, 135, 744, 933
BstDEI	CTNAG	9 cut(s)	72, 96, 129, 138, 552, 600, 756, 879, 1021
BstDSI	CCRYGG	6 cut(s)	202, 214, 238, 394, 973, 979
BstFNI	CGCG	2 cut(s)	11, 228
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	296, 867
BstKTI	GATC	3 cut(s)	25, 277, 466
BstMAI	GTCTC	1 cut(s)	551
BstMBI	GATC	3 cut(s)	22, 274, 463
BstNI	CCWGG	2 cut(s)	570, 1053
BstPAI	GACNNNNGTC	1 cut(s)	54
BstSCI	CCNGG	3 cut(s)	568, 1009, 1051
BstUI	CGCG	2 cut(s)	11, 228
BstV1I	GCAGC	7 cut(s)	55, 72, 613, 811, 814, 887, 1043
BstV2I	GAAGAC	2 cut(s)	758, 1053
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuI	GTATCC	2 cut(s)	308, 989
BsuRI	GGCC	7 cut(s)	119, 201, 213, 237, 379, 972, 978
BtgI	CCRYGG	6 cut(s)	202, 214, 238, 394, 973, 979
BtrI	CACGTC	2 cut(s)	245, 362
BtsI	GCAGTG	2 cut(s)	478, 1033
BtsIMutI	CAGTG	3 cut(s)	478, 1006, 1033
BveI	ACCTGC	1 cut(s)	133
Cac8I	GCNNGC	4 cut(s)	117, 135, 744, 933
CaiI	CAGNNNCTG	1 cut(s)	85
CfoI	GCGC	2 cut(s)	296, 867
Cfr13I	GGNCC	6 cut(s)	49, 118, 211, 377, 983, 1007
CseI	GACGC	2 cut(s)	234, 392
Csp6I	GTAC	2 cut(s)	477, 949
CviAII	CATG	2 cut(s)	485, 796
CviQI	GTAC	2 cut(s)	477, 949
DdeI	CTNAG	9 cut(s)	72, 96, 129, 138, 552, 600, 756, 879, 1021
DpnI	GATC	3 cut(s)	24, 276, 465
DpnII	GATC	3 cut(s)	22, 274, 463
DraI	TTTAAA	1 cut(s)	499
DraIII	CACNNNGTG	1 cut(s)	992
EaeI	YGGCCR	3 cut(s)	199, 235, 976
Eam1104I	CTCTTC	7 cut(s)	324, 558, 660, 696, 717, 722, 882
EarI	CTCTTC	7 cut(s)	324, 558, 660, 696, 717, 722, 882
EciI	GGCGGA	2 cut(s)	81, 1020
Eco47I	GGWCC	3 cut(s)	49, 983, 1007
Eco47III	AGCGCT	1 cut(s)	295
Eco57I	CTGAAG	3 cut(s)	582, 947, 957
Eco88I	CYCGRG	1 cut(s)	270
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRII	CCWGG	2 cut(s)	568, 1051
FaeI	CATG	2 cut(s)	488, 799
FaiI	YATR	7 cut(s)	192, 309, 486, 708, 797, 914, 954
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	2 cut(s)	484, 795
FauI	CCCGC	2 cut(s)	142, 221
Fnu4HI	GCNGC	9 cut(s)	69, 77, 86, 469, 627, 800, 803, 876, 1032
Fsp4HI	GCNGC	9 cut(s)	69, 77, 86, 469, 627, 800, 803, 876, 1032
GlaI	GCGC	2 cut(s)	295, 866
GluI	GCNGC	9 cut(s)	69, 77, 86, 469, 627, 800, 803, 876, 1032
GsaI	CCCAGC	1 cut(s)	115
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	7 cut(s)	119, 201, 213, 237, 379, 972, 978
HapII	CCGG	2 cut(s)	677, 1011
HgaI	GACGC	2 cut(s)	234, 392
HhaI	GCGC	2 cut(s)	296, 867
Hin1I	GRCGYC	1 cut(s)	403
Hin1II	CATG	2 cut(s)	488, 799
Hin6I	GCGC	2 cut(s)	294, 865
HinP1I	GCGC	2 cut(s)	294, 865
HincII	GTYRAC	1 cut(s)	59
HindII	GTYRAC	1 cut(s)	59
HindIII	AAGCTT	1 cut(s)	140
HinfI	GANTC	2 cut(s)	659, 1066
HpaII	CCGG	2 cut(s)	677, 1011
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	4 cut(s)	59, 224, 242, 986
Hpy188I	TCNGA	5 cut(s)	355, 453, 664, 853, 927
Hpy188III	TCNNGA	3 cut(s)	272, 554, 1063
Hpy8I	GTNNAC	4 cut(s)	59, 224, 242, 986
Hpy99I	CGWCG	1 cut(s)	408
HpyCH4III	ACNGT	3 cut(s)	374, 652, 1001
HpyCH4IV	ACGT	3 cut(s)	244, 361, 502
HpyCH4V	TGCA	4 cut(s)	434, 746, 799, 1031
HpyF3I	CTNAG	9 cut(s)	72, 96, 129, 138, 552, 600, 756, 879, 1021
HpySE526I	ACGT	3 cut(s)	244, 361, 502
Hsp92I	GRCGYC	1 cut(s)	403
Hsp92II	CATG	2 cut(s)	488, 799
HspAI	GCGC	2 cut(s)	294, 865
Kzo9I	GATC	3 cut(s)	22, 274, 463
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	1 cut(s)	673
Lsp1109I	GCAGC	7 cut(s)	55, 72, 613, 811, 814, 887, 1043
LweI	GCATC	2 cut(s)	421, 622
MaeII	ACGT	3 cut(s)	244, 361, 502
MaeIII	GTNAC	1 cut(s)	1016
MalI	GATC	3 cut(s)	24, 276, 465
MboI	GATC	3 cut(s)	22, 274, 463
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	325
MluCI	AATT	2 cut(s)	523, 579
MlyI	GAGTC	2 cut(s)	668, 1060
MmeI	TCCRAC	1 cut(s)	642
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	2 cut(s)	417, 498
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	3 cut(s)	76, 878, 935
MspI	CCGG	2 cut(s)	677, 1011
MspR9I	CCNGG	3 cut(s)	570, 1011, 1053
MssI	GTTTAAAC	1 cut(s)	499
MvaI	CCWGG	2 cut(s)	570, 1053
MvnI	CGCG	2 cut(s)	11, 228
NciI	CCSGG	1 cut(s)	1011
NdeII	GATC	3 cut(s)	22, 274, 463
NlaIII	CATG	2 cut(s)	488, 799
NlaIV	GGNNCC	5 cut(s)	51, 212, 388, 675, 1009
PaeR7I	CTCGAG	1 cut(s)	270
PasI	CCCWGGG	1 cut(s)	1052
PciSI	GCTCTTC	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	992
PkrI	GCNGC	9 cut(s)	70, 78, 87, 470, 628, 801, 804, 877, 1033
PleI	GAGTC	2 cut(s)	667, 1060
PmeI	GTTTAAAC	1 cut(s)	499
PpsI	GAGTC	2 cut(s)	667, 1060
PpuMI	RGGWCCY	1 cut(s)	49
PshAI	GACNNNNGTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	49
Psp6I	CCWGG	2 cut(s)	568, 1051
PspFI	CCCAGC	1 cut(s)	111
PspGI	CCWGG	2 cut(s)	568, 1051
PspN4I	GGNNCC	5 cut(s)	51, 212, 388, 675, 1009
PspPI	GGNCC	6 cut(s)	49, 118, 211, 377, 983, 1007
PspPPI	RGGWCCY	1 cut(s)	49
PstNI	CAGNNNCTG	1 cut(s)	85
PsuI	RGATCY	1 cut(s)	274
PvuII	CAGCTG	2 cut(s)	878, 935
RsaI	GTAC	2 cut(s)	478, 950
RsaNI	GTAC	2 cut(s)	477, 949
RseI	CAYNNNNRTG	1 cut(s)	489
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	417, 498
SatI	GCNGC	9 cut(s)	69, 77, 86, 469, 627, 800, 803, 876, 1032
Sau3AI	GATC	3 cut(s)	22, 274, 463
Sau96I	GGNCC	6 cut(s)	49, 118, 211, 377, 983, 1007
SchI	GAGTC	2 cut(s)	668, 1060
ScrFI	CCNGG	3 cut(s)	570, 1011, 1053
SduI	GDGCHC	1 cut(s)	325
SfaNI	GCATC	2 cut(s)	421, 622
Sfr274I	CTCGAG	1 cut(s)	270
SinI	GGWCC	3 cut(s)	49, 983, 1007
SlaI	CTCGAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	489
SmlI	CTYRAG	2 cut(s)	168, 270
SmoI	CTYRAG	2 cut(s)	168, 270
Sse9I	AATT	2 cut(s)	523, 579
SsiI	CCGC	7 cut(s)	9, 76, 92, 135, 228, 469, 1005
StyD4I	CCNGG	3 cut(s)	568, 1009, 1051
TaaI	ACNGT	3 cut(s)	374, 652, 1001
TaiI	ACGT	3 cut(s)	247, 364, 505
TaqI	TCGA	3 cut(s)	21, 271, 967
TasI	AATT	2 cut(s)	523, 579
TauI	GCSGC	2 cut(s)	79, 471
Tru1I	TTAA	2 cut(s)	417, 498
Tru9I	TTAA	2 cut(s)	417, 498
TscAI	CASTG	3 cut(s)	478, 1006, 1033
TseI	GCWGC	7 cut(s)	68, 85, 626, 799, 802, 875, 1031
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	3 cut(s)	478, 1006, 1033
Van91I	CCANNNNNTGG	1 cut(s)	992
VpaK11BI	GGWCC	3 cut(s)	49, 983, 1007
XhoI	CTCGAG	1 cut(s)	270
XmnI	GAANNNNTTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.