Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0001809

Physical Location & Seq

Genomic Coordinates Forward (+)

21888048 .. 21891302

Gene Structure 3255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG224100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGGCAACCGCGAACCCTTTCGATCTGTTGGGCGACGACGACAACGATGACGTAAGTCAACTCGCTGCTAAGGTGGTGGCTCCTGCCGCCGCCGCCGCCGCCCAGCCCAAGAAGGGTGCTCCGGCCCAAGCTGTTCAGCCTGGGAAGTCCGCCAAGCTCCCCTCCAAGCCTCTCCCTCCTGCTCAAGCTGTGAGGGAAGGTGGCCGTGGAGGTGGCCGTGGCGGCGGCCGAGGGTTTGGTGGTGAGGGGCGTGGATATGGTGAGGGGCGTGGGTATGGTGGCCGTGGACGTGGTGGAGGTGGTGGTGGATATGGTGGATATAATCGGGATCGTGGCAGCGATGAGAACACTAATGGTTTCTCTGGTGGAGGGTACAGCAAACCCGAAGAGGGGGATAGGGATGTTTCTGAAAGGCGTGGTGGCTACGGGGGACCTCGTGGTTCCTTCCGTGGTGGACGCCGTGGTGGCTTTAGCAATGGAGAGGATGCAGAAGGGGAGCGTCCTCGGAGGACATTTGACCGTCACAGTGGCACTGGACGTGGAGCTAACTTTAAACGTGATGGAGCTGGTCGTGGGAATTGGGGAACTCCCACTGATGAAATTGCTTCTGAGATAGAGGCTGGCACTGAAGTTGAGAAGGATGTTGGTGCTGAGAAGCAGTTGGGAGAGAATGAGGCTGCTGATGCCAGCAAGGAGAATCCTGTGGAAGAGCCAGAAGAGAAGGAGCCTGAGGAAAAGGAGATGACTCTGGAAGAGTATGAGAAGGTTCTTGAAGAGAAGAGGAAGGCTCTGGCTGCACTTAAGACTGAGGAGAGAAAGGTTGACTTGGACAAAGAGTTGAAGTCTATGCAGCAGCTCTCAAGCAAGAAGACAAATGATGAAATATTTATCAAGCTGGTGATTACCTTGCACTTTATACTTATAATACTTCATTTTATGCGAGGAAGTGTATTAATTCTGCATTTCAGGGTTCTGAAAAGGATAAACGCAAGGAAGCTGCTGAGAAGGAGGAGAGAGCCAAGAAGTCTGTTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HABP4_PAI-RBP1 Stm1_N

Protein Analysis

345

Amino Acids

37.06

Weight (kDa)

9.01

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stm1_N	PF09598	1 - 76	7.1e-21	Stm1
HABP4_PAI-RBP1	PF04774	168 - 274	4e-30	Hyaluronan / mRNA binding family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16830 AT4G16830 AT4G16830
fragaria_vesca	FvH4_5g20020 FvH4_5g20020 FvH4_5g20020 FvH4_7g10280
malus_domestica	MD02G1213500.v1.1 MD04G1050100.v1.1 MD06G1049800.v1.1 MD07G1109500.v1.1
prunus_persica	Prupe.2G132500_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1
pyrus_communis	pycom04g04410 pycom06g04220 pycom07g09400 pycom12646g00030
rosa_chinensis	RchiOBHm_Chr1g0348031 RchiOBHm_Chr7g0204831 RchiOBHm_Chr7g0204851
rosa_laevigata	RLG00000003428 RLG00000028697
rosa_multiflora	Rmu_sc0002180.1_g000016 Rmu_sc0002180.1_g000023 Rmu_ssc0000263.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252730 Rroxscaffold_4G00307320
rosa_rugosa	Rorug01G0190700 Rorug01G0190800 Rorug07G0086000 Rorug07G0086000 Rorug07G0086100
rosa_samantha	Rh1AG209300 Rh1BG174300 Rh1CG193700 Rh1DG204100 Rh7AG216500 Rh7AG216700 Rh7BG213600 Rh7CG230000 Rh7DG224100 Rh7DG224300
rosa_wichuraiana	Rw1G017440 Rw7G018760 Rw7G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	923
AccII	CGCG	1 cut(s)	11
AciI	CCGC	9 cut(s)	9, 87, 90, 93, 96, 99, 150, 222, 225
AclWI	GGATC	1 cut(s)	336
AcoI	YGGCCR	4 cut(s)	202, 214, 226, 280
AcuI	CTGAAG	1 cut(s)	648
AcyI	GRCGYC	1 cut(s)	457
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	3 cut(s)	113, 389, 390
AflII	CTTAAG	1 cut(s)	800
AgsI	TTSAA	2 cut(s)	773, 841
AjiI	CACGTC	2 cut(s)	290, 539
AjnI	CCWGG	1 cut(s)	139
AluBI	AGCT	8 cut(s)	131, 157, 188, 545, 566, 856, 895, 997
AluI	AGCT	8 cut(s)	131, 157, 188, 545, 566, 856, 895, 997
Alw21I	GWGCWC	1 cut(s)	121
AlwI	GGATC	1 cut(s)	336
AoxI	GGCC	5 cut(s)	123, 202, 214, 226, 280
ApeKI	GCWGC	7 cut(s)	65, 336, 677, 794, 850, 853, 997
AseI	ATTAAT	1 cut(s)	953
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	124, 431
AsuHPI	GGTGA	3 cut(s)	254, 272, 910
AvaII	GGWCC	1 cut(s)	431
AxyI	CCTNAGG	1 cut(s)	729
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	875
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	7 cut(s)	52, 348, 664, 781, 862, 865, 984
BccI	CCATC	1 cut(s)	554
BceAI	ACGGC	4 cut(s)	189, 201, 267, 444
BciT130I	CCWGG	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	800
BglI	GCCNNNNNGGC	2 cut(s)	222, 465
Bme1390I	CCNGG	1 cut(s)	141
Bme18I	GGWCC	1 cut(s)	431
BmgBI	CACGTC	2 cut(s)	290, 539
BmgT120I	GGNCC	2 cut(s)	124, 431
BmiI	GGNNCC	4 cut(s)	81, 432, 442, 726
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	2 cut(s)	475, 673
BoxI	GACNNNNGTC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	875
BplI	GAGNNNNNCTC	2 cut(s)	772, 804
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	2 cut(s)	168, 844
BsaHI	GRCGYC	1 cut(s)	457
BsaJI	CCNNGG	8 cut(s)	140, 205, 217, 229, 283, 448, 460, 503
Bsc4I	CCNNNNNNNGG	3 cut(s)	113, 389, 390
Bse1I	ACTGG	1 cut(s)	538
Bse21I	CCTNAGG	1 cut(s)	729
Bse3DI	GCAATG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	8 cut(s)	140, 205, 217, 229, 283, 448, 460, 503
BseGI	GGATG	3 cut(s)	406, 490, 646
BseLI	CCNNNNNNNGG	3 cut(s)	113, 389, 390
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	5 cut(s)	600, 642, 720, 798, 992
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	2 cut(s)	824, 1024
BseX3I	CGGCCG	1 cut(s)	226
BseXI	GCAGC	7 cut(s)	52, 348, 664, 781, 862, 865, 984
BseYI	CCCAGC	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	5 cut(s)	125, 204, 216, 228, 282
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	1 cut(s)	444
BslI	CCNNNNNNNGG	3 cut(s)	113, 389, 390
BsmFI	GGGAC	1 cut(s)	444
BsnI	GGCC	5 cut(s)	125, 204, 216, 228, 282
Bsp1286I	GDGCHC	1 cut(s)	121
Bsp143I	GATC	2 cut(s)	22, 328
BspACI	CCGC	9 cut(s)	9, 87, 90, 93, 96, 99, 150, 222, 225
BspANI	GGCC	5 cut(s)	125, 204, 216, 228, 282
BspCNI	CTCAG	5 cut(s)	601, 643, 721, 799, 993
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	4 cut(s)	81, 432, 442, 726
BspPI	GGATC	1 cut(s)	336
BspQI	GCTCTTC	1 cut(s)	702
BspTI	CTTAAG	1 cut(s)	800
BsrDI	GCAATG	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	8 cut(s)	140, 205, 217, 229, 283, 448, 460, 503
BssMI	GATC	2 cut(s)	22, 328
BssNI	GRCGYC	1 cut(s)	457
BssSI	CACGAG	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	521, 527
Bst6I	CTCTTC	6 cut(s)	381, 702, 711, 747, 768, 773
BstACI	GRCGYC	1 cut(s)	457
BstAFI	CTTAAG	1 cut(s)	800
BstC8I	GCNNGC	2 cut(s)	622, 688
BstDEI	CTNAG	6 cut(s)	69, 609, 651, 729, 807, 1001
BstDSI	CCRYGG	5 cut(s)	205, 217, 283, 448, 460
BstF5I	GGATG	3 cut(s)	406, 490, 646
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	2 cut(s)	25, 331
BstMBI	GATC	2 cut(s)	22, 328
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 92, 95, 98, 222, 465, 683, 794
BstNI	CCWGG	1 cut(s)	141
BstPAI	GACNNNNGTC	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	139
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	7 cut(s)	52, 348, 664, 781, 862, 865, 984
BstV2I	GAAGAC	1 cut(s)	875
BstZI	CGGCCG	1 cut(s)	226
Bsu36I	CCTNAGG	1 cut(s)	729
BsuRI	GGCC	5 cut(s)	125, 204, 216, 228, 282
BtgI	CCRYGG	5 cut(s)	205, 217, 283, 448, 460
BtgZI	GCGATG	1 cut(s)	354
BtrI	CACGTC	2 cut(s)	290, 539
BtsCI	GGATG	3 cut(s)	406, 490, 646
BtsIMutI	CAGTG	4 cut(s)	531, 532, 591, 624
Cac8I	GCNNGC	2 cut(s)	622, 688
Cfr13I	GGNCC	2 cut(s)	124, 431
CseI	GACGC	2 cut(s)	465, 488
Csp6I	GTAC	1 cut(s)	373
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	6 cut(s)	69, 609, 651, 729, 807, 1001
DpnI	GATC	2 cut(s)	24, 330
DpnII	GATC	2 cut(s)	22, 328
DraI	TTTAAA	1 cut(s)	553
EaeI	YGGCCR	4 cut(s)	202, 214, 226, 280
EagI	CGGCCG	1 cut(s)	226
Eam1104I	CTCTTC	6 cut(s)	381, 702, 711, 747, 768, 773
EarI	CTCTTC	6 cut(s)	381, 702, 711, 747, 768, 773
EciI	GGCGGA	1 cut(s)	139
EclXI	CGGCCG	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	431
Eco52I	CGGCCG	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	648
Eco81I	CCTNAGG	1 cut(s)	729
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	139
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	1 cut(s)	444
FokI	GGATG	3 cut(s)	413, 497, 653
GsaI	CCCAGC	1 cut(s)	106
HaeIII	GGCC	5 cut(s)	125, 204, 216, 228, 282
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	2 cut(s)	465, 488
Hin1I	GRCGYC	1 cut(s)	457
HincII	GTYRAC	2 cut(s)	59, 823
HindII	GTYRAC	2 cut(s)	59, 823
HinfI	GANTC	2 cut(s)	697, 745
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	3 cut(s)	254, 272, 910
Hpy166II	GTNNAC	4 cut(s)	59, 287, 455, 823
Hpy188I	TCNGA	4 cut(s)	409, 507, 610, 975
Hpy188III	TCNNGA	3 cut(s)	326, 749, 770
Hpy8I	GTNNAC	4 cut(s)	59, 287, 455, 823
Hpy99I	CGWCG	2 cut(s)	38, 41
HpyAV	CCTTC	9 cut(s)	106, 191, 454, 485, 631, 715, 757, 778, 999
HpyCH4III	ACNGT	2 cut(s)	521, 527
HpyCH4IV	ACGT	4 cut(s)	51, 289, 538, 556
HpyCH4V	TGCA	5 cut(s)	488, 797, 850, 910, 961
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 92, 95, 98, 222, 465, 683, 794
HpyF3I	CTNAG	6 cut(s)	69, 609, 651, 729, 807, 1001
HpySE526I	ACGT	4 cut(s)	51, 289, 538, 556
Hsp92I	GRCGYC	1 cut(s)	457
Kzo9I	GATC	2 cut(s)	22, 328
LguI	GCTCTTC	1 cut(s)	702
LmnI	GCTCC	7 cut(s)	85, 124, 162, 496, 542, 563, 724
Lsp1109I	GCAGC	7 cut(s)	52, 348, 664, 781, 862, 865, 984
LweI	GCATC	2 cut(s)	475, 673
MaeII	ACGT	4 cut(s)	51, 289, 538, 556
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	2 cut(s)	24, 330
MboI	GATC	2 cut(s)	22, 328
MboII	GAAGA	7 cut(s)	398, 719, 728, 764, 785, 790, 880
MhlI	GDGCHC	1 cut(s)	121
MluCI	AATT	3 cut(s)	577, 600, 954
MlyI	GAGTC	1 cut(s)	739
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	3 cut(s)	552, 801, 953
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	8 cut(s)	86, 92, 95, 98, 222, 465, 683, 794
NdeII	GATC	2 cut(s)	22, 328
NlaIV	GGNNCC	4 cut(s)	81, 432, 442, 726
NmeAIII	GCCGAG	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	521
PciSI	GCTCTTC	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	697
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
PpuMI	RGGWCCY	1 cut(s)	431
PshAI	GACNNNNGTC	1 cut(s)	54
PshBI	ATTAAT	1 cut(s)	953
PsiI	TTATAA	1 cut(s)	923
Psp5II	RGGWCCY	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	4 cut(s)	81, 432, 442, 726
PspPI	GGNCC	2 cut(s)	124, 431
PspPPI	RGGWCCY	1 cut(s)	431
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SapI	GCTCTTC	1 cut(s)	702
SaqAI	TTAA	3 cut(s)	552, 801, 953
Sau3AI	GATC	2 cut(s)	22, 328
Sau96I	GGNCC	2 cut(s)	124, 431
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	121
SfaNI	GCATC	2 cut(s)	475, 673
SinI	GGWCC	1 cut(s)	431
SmlI	CTYRAG	3 cut(s)	183, 800, 859
SmoI	CTYRAG	3 cut(s)	183, 800, 859
Sse9I	AATT	3 cut(s)	577, 600, 954
SsiI	CCGC	9 cut(s)	9, 87, 90, 93, 96, 99, 150, 222, 225
SspI	AATATT	1 cut(s)	885
StyD4I	CCNGG	1 cut(s)	139
TaaI	ACNGT	2 cut(s)	521, 527
TaiI	ACGT	4 cut(s)	54, 292, 541, 559
TaqI	TCGA	1 cut(s)	21
TasI	AATT	3 cut(s)	577, 600, 954
TauI	GCSGC	7 cut(s)	89, 92, 95, 98, 101, 225, 228
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	3 cut(s)	552, 801, 953
Tru9I	TTAA	3 cut(s)	552, 801, 953
TscAI	CASTG	4 cut(s)	532, 538, 598, 631
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	7 cut(s)	65, 336, 677, 794, 850, 853, 997
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	3 cut(s)	612, 894, 920
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	4 cut(s)	532, 538, 598, 631
Vha464I	CTTAAG	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	431
VspI	ATTAAT	1 cut(s)	953
XmnI	GAANNNNTTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.