Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0001809

Physical Location & Seq

Genomic Coordinates Forward (+)

21503254 .. 21505908

Gene Structure 2655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG230000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGGCAACCGCGAACCCTTTCGATCTGTTGGGCGATGACGACAACGATGACGTAAGTCAACTCGCTGCTAAGGTGGTGGCTCCTGCCGCCGCCGCCGCCCAGCCCAAGAAGGGTGCCCCGGCCCAAGCTGTTCAGCCTGCTAAGTCCGCCAAGCTCCCCTCCAAGCCTCTCCCTCCTGCTCAAGCTGTGAGGGAAGGCGGGCGTGGAGGTGGACGTGGTGGCGGCCGCGGATATGGTGGCGAGGGCCGTGGATATGGCGAGGGCCGTGGGTATGGTGGCCGTGGACGTGGTGGAGGTGGTGGTGGATATAATCGGGATCGTGGCAGCGATGAGAACACTAATGGTTTCTCTGGTGGAGGGTACAGCAAACCTGAAGAGGGGGACAGGGATGTTTCTGAAAGGCGTGGTGGCTACGGGGGACCTCGTGGTTCCTTCCGTGGTGGACGCCGTGGTGGCTTTAGCAATGGAGAGGATGCAGAAGGGGAGCGTCCTCGGAGGACATTTGACCGTCACAGTGGCACTGGACGTGGAGCTAACTTTAAACGTGATGGAGCTGGTCGTGGGAATTGGGGAACTCCCACTGATGAAATTGCTTCGGAGATAGAGGCTGGCACTGAAGTTGAGAAGGATGTTGGTGCTGAGAAGCAGTTGGGAGAGAATGAGGCTGCTGATGCCAGCAAGGAAAATCCTGTGGAAGAGCCAGAAGAGAAGGAGCCTGAGGAAAAGGAGATGACTCTGGAAGAGTATGAGAAGGTTCTTGAAGAGAAGAGGAAGGCTCTGGCTGCACTTAAGACTGAGGAGAGAAAGGTTGACTTGGACAAAGAGTTGAAGTCTATGCAGCAGCTCTCAAGCAAGAAGACAAATGATGAAATATTTATCAAGCTGGGTTCTGAAAAGGATAAACGCAAGGAAGCTGCTGAGAAGGAGGAGAGAGCCAAGAAGTCTGTTAGCATAAACGAATTCCTGAAGCCTGCTGAAGGGGAGAACCAGAGGTTCTATGGTGGTCGTAATCGGGGACGTGGAGGCCGTGGTTCAAGAGGCGGAAACAGTGGAGGACATGGAGGTTACTCGAGCAATGTGCAAGCACCGCCCATTGCAGATCCTGGGCACTTTCCATCCCTTGGTGGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HABP4_PAI-RBP1 Stm1_N

Protein Analysis

377

Amino Acids

39.81

Weight (kDa)

6.92

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stm1_N	PF09598	1 - 74	3.7e-21	Stm1
HABP4_PAI-RBP1	PF04774	164 - 270	4.7e-30	Hyaluronan / mRNA binding family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16830 AT4G16830 AT4G16830
fragaria_vesca	FvH4_5g20020 FvH4_5g20020 FvH4_5g20020 FvH4_7g10280
malus_domestica	MD02G1213500.v1.1 MD04G1050100.v1.1 MD06G1049800.v1.1 MD07G1109500.v1.1
prunus_persica	Prupe.2G132500_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1
pyrus_communis	pycom04g04410 pycom06g04220 pycom07g09400 pycom12646g00030
rosa_chinensis	RchiOBHm_Chr1g0348031 RchiOBHm_Chr7g0204831 RchiOBHm_Chr7g0204851
rosa_laevigata	RLG00000003428 RLG00000028697
rosa_multiflora	Rmu_sc0002180.1_g000016 Rmu_sc0002180.1_g000023 Rmu_ssc0000263.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252730 Rroxscaffold_4G00307320
rosa_rugosa	Rorug01G0190700 Rorug01G0190800 Rorug07G0086000 Rorug07G0086000 Rorug07G0086100
rosa_samantha	Rh1AG209300 Rh1BG174300 Rh1CG193700 Rh1DG204100 Rh7AG216500 Rh7AG216700 Rh7BG213600 Rh7CG230000 Rh7DG224100 Rh7DG224300
rosa_wichuraiana	Rw1G017440 Rw7G018760 Rw7G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	113
AccB7I	CCANNNNNTGG	1 cut(s)	1121
AccII	CGCG	2 cut(s)	11, 228
AclWI	GGATC	2 cut(s)	324, 1094
AcoI	YGGCCR	2 cut(s)	223, 277
AcsI	RAATTY	1 cut(s)	959
AcuI	CTGAAG	4 cut(s)	393, 636, 986, 996
AcyI	GRCGYC	1 cut(s)	445
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	4 cut(s)	110, 377, 977, 1121
AflII	CTTAAG	1 cut(s)	788
AgsI	TTSAA	3 cut(s)	761, 829, 1035
AjiI	CACGTC	4 cut(s)	215, 287, 527, 1019
AjnI	CCWGG	1 cut(s)	1102
AluBI	AGCT	8 cut(s)	128, 154, 185, 533, 554, 844, 883, 914
AluI	AGCT	8 cut(s)	128, 154, 185, 533, 554, 844, 883, 914
AlwI	GGATC	2 cut(s)	324, 1094
AlwNI	CAGNNNCTG	1 cut(s)	1103
Ama87I	CYCGRG	1 cut(s)	1069
AoxI	GGCC	6 cut(s)	120, 223, 244, 262, 277, 1024
ApeKI	GCWGC	7 cut(s)	65, 324, 665, 782, 838, 841, 914
ApoI	RAATTY	1 cut(s)	959
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	4 cut(s)	121, 244, 262, 419
AsuC2I	CCSGG	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	1069
AvaII	GGWCC	1 cut(s)	419
AxyI	CCTNAGG	1 cut(s)	717
BaeGI	GKGCMC	2 cut(s)	118, 1110
BanI	GGYRCC	1 cut(s)	113
BauI	CACGAG	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	863
BbvI	GCAGC	7 cut(s)	52, 336, 652, 769, 850, 853, 901
BccI	CCATC	2 cut(s)	542, 1123
BceAI	ACGGC	5 cut(s)	231, 249, 264, 432, 1011
BcgI	CGANNNNNNTGC	2 cut(s)	1060, 1094
BciT130I	CCWGG	1 cut(s)	1104
BcnI	CCSGG	1 cut(s)	119
BfrI	CTTAAG	1 cut(s)	788
BglI	GCCNNNNNGGC	1 cut(s)	453
Bme1390I	CCNGG	2 cut(s)	119, 1104
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	1069
BmgBI	CACGTC	4 cut(s)	215, 287, 527, 1019
BmgT120I	GGNCC	4 cut(s)	121, 244, 262, 419
BmiI	GGNNCC	5 cut(s)	81, 115, 420, 430, 714
BmrFI	CCNGG	2 cut(s)	119, 1104
BmsI	GCATC	2 cut(s)	463, 661
BoxI	GACNNNNGTC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	863
BplI	GAGNNNNNCTC	2 cut(s)	760, 792
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	2 cut(s)	165, 832
BpuMI	CCSGG	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	4 cut(s)	110, 377, 977, 1121
Bse1I	ACTGG	1 cut(s)	526
Bse21I	CCTNAGG	1 cut(s)	717
Bse3DI	GCAATG	3 cut(s)	469, 1081, 1092
BseBI	CCWGG	1 cut(s)	1104
BseGI	GGATG	4 cut(s)	394, 478, 634, 1115
BseLI	CCNNNNNNNGG	4 cut(s)	110, 377, 977, 1121
BseMI	GCAATG	3 cut(s)	469, 1081, 1092
BseMII	CTCAG	4 cut(s)	630, 708, 786, 909
BseNI	ACTGG	1 cut(s)	526
BseRI	GAGGAG	2 cut(s)	812, 941
BseSI	GKGCMC	2 cut(s)	118, 1110
BseX3I	CGGCCG	1 cut(s)	223
BseXI	GCAGC	7 cut(s)	52, 336, 652, 769, 850, 853, 901
BseYI	CCCAGC	2 cut(s)	99, 883
BsgI	GTGCAG	1 cut(s)	768
Bsh1236I	CGCG	2 cut(s)	11, 228
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	6 cut(s)	122, 225, 246, 264, 279, 1026
BshNI	GGYRCC	1 cut(s)	113
BsiEI	CGRYCG	1 cut(s)	226
BsiHKCI	CYCGRG	1 cut(s)	1069
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	3 cut(s)	395, 432, 1029
BslI	CCNNNNNNNGG	4 cut(s)	110, 377, 977, 1121
BsmFI	GGGAC	3 cut(s)	395, 432, 1029
BsnI	GGCC	6 cut(s)	122, 225, 246, 264, 279, 1026
BsoBI	CYCGRG	1 cut(s)	1069
Bsp1286I	GDGCHC	2 cut(s)	118, 1110
Bsp143I	GATC	3 cut(s)	22, 316, 1099
BspANI	GGCC	6 cut(s)	122, 225, 246, 264, 279, 1026
BspCNI	CTCAG	4 cut(s)	631, 709, 787, 910
BspFNI	CGCG	2 cut(s)	11, 228
BspLI	GGNNCC	5 cut(s)	81, 115, 420, 430, 714
BspPI	GGATC	2 cut(s)	324, 1094
BspQI	GCTCTTC	1 cut(s)	690
BspT107I	GGYRCC	1 cut(s)	113
BspTI	CTTAAG	1 cut(s)	788
BsrDI	GCAATG	3 cut(s)	469, 1081, 1092
BsrI	ACTGG	1 cut(s)	526
BssMI	GATC	3 cut(s)	22, 316, 1099
BssNI	GRCGYC	1 cut(s)	445
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	1120
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	1 cut(s)	1104
Bst4CI	ACNGT	3 cut(s)	509, 515, 1049
Bst6I	CTCTTC	6 cut(s)	369, 690, 699, 735, 756, 761
BstACI	GRCGYC	1 cut(s)	445
BstAFI	CTTAAG	1 cut(s)	788
BstC8I	GCNNGC	6 cut(s)	138, 200, 610, 676, 972, 1083
BstDEI	CTNAG	6 cut(s)	69, 141, 639, 717, 795, 918
BstDSI	CCRYGG	7 cut(s)	226, 247, 265, 280, 436, 448, 1027
BstENI	CCTNNNNNAGG	1 cut(s)	975
BstF5I	GGATG	4 cut(s)	394, 478, 634, 1115
BstFNI	CGCG	2 cut(s)	11, 228
BstKTI	GATC	3 cut(s)	25, 319, 1102
BstMBI	GATC	3 cut(s)	22, 316, 1099
BstMCI	CGRYCG	1 cut(s)	226
BstMWI	GCNNNNNNNGC	8 cut(s)	86, 92, 95, 146, 453, 671, 782, 1087
BstNI	CCWGG	1 cut(s)	1104
BstPAI	GACNNNNGTC	1 cut(s)	54
BstSCI	CCNGG	2 cut(s)	117, 1102
BstSLI	GKGCMC	2 cut(s)	118, 1110
BstUI	CGCG	2 cut(s)	11, 228
BstV1I	GCAGC	7 cut(s)	52, 336, 652, 769, 850, 853, 901
BstV2I	GAAGAC	1 cut(s)	863
BstX2I	RGATCY	1 cut(s)	1099
BstYI	RGATCY	1 cut(s)	1099
BstZI	CGGCCG	1 cut(s)	223
Bsu36I	CCTNAGG	1 cut(s)	717
BsuRI	GGCC	6 cut(s)	122, 225, 246, 264, 279, 1026
BtgI	CCRYGG	7 cut(s)	226, 247, 265, 280, 436, 448, 1027
BtgZI	GCGATG	2 cut(s)	48, 342
BtrI	CACGTC	4 cut(s)	215, 287, 527, 1019
BtsCI	GGATG	4 cut(s)	394, 478, 634, 1115
BtsIMutI	CAGTG	5 cut(s)	519, 520, 579, 612, 1054
Cac8I	GCNNGC	6 cut(s)	138, 200, 610, 676, 972, 1083
CaiI	CAGNNNCTG	1 cut(s)	1103
CciNI	GCGGCCGC	1 cut(s)	223
Cfr13I	GGNCC	4 cut(s)	121, 244, 262, 419
Cfr42I	CCGCGG	1 cut(s)	229
CseI	GACGC	2 cut(s)	453, 476
Csp6I	GTAC	1 cut(s)	361
CviAII	CATG	1 cut(s)	1058
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	6 cut(s)	69, 141, 639, 717, 795, 918
DpnI	GATC	3 cut(s)	24, 318, 1101
DpnII	GATC	3 cut(s)	22, 316, 1099
DraI	TTTAAA	1 cut(s)	541
EaeI	YGGCCR	2 cut(s)	223, 277
EagI	CGGCCG	1 cut(s)	223
Eam1104I	CTCTTC	6 cut(s)	369, 690, 699, 735, 756, 761
EarI	CTCTTC	6 cut(s)	369, 690, 699, 735, 756, 761
EciI	GGCGGA	2 cut(s)	136, 1056
EclXI	CGGCCG	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	1120
Eco47I	GGWCC	1 cut(s)	419
Eco52I	CGGCCG	1 cut(s)	223
Eco57I	CTGAAG	4 cut(s)	393, 636, 986, 996
Eco81I	CCTNAGG	1 cut(s)	717
Eco88I	CYCGRG	1 cut(s)	1069
EcoNI	CCTNNNNNAGG	1 cut(s)	975
EcoO109I	RGGNCCY	1 cut(s)	419
EcoRI	GAATTC	1 cut(s)	959
EcoRII	CCWGG	1 cut(s)	1102
EcoT14I	CCWWGG	1 cut(s)	1120
ErhI	CCWWGG	1 cut(s)	1120
FaeI	CATG	1 cut(s)	1061
FaiI	YATR	9 cut(s)	234, 255, 273, 309, 747, 836, 953, 999, 1059
FalI	AAGNNNNNCTT	2 cut(s)	797, 829
FaqI	GGGAC	3 cut(s)	395, 432, 1029
FatI	CATG	1 cut(s)	1057
FauI	CCCGC	1 cut(s)	191
FokI	GGATG	4 cut(s)	401, 485, 641, 1102
GsaI	CCCAGC	2 cut(s)	103, 887
HaeIII	GGCC	6 cut(s)	122, 225, 246, 264, 279, 1026
HapII	CCGG	1 cut(s)	119
HgaI	GACGC	2 cut(s)	453, 476
Hin1I	GRCGYC	1 cut(s)	445
Hin1II	CATG	1 cut(s)	1061
HincII	GTYRAC	2 cut(s)	59, 811
HindII	GTYRAC	2 cut(s)	59, 811
HinfI	GANTC	1 cut(s)	733
HpaII	CCGG	1 cut(s)	119
Hpy166II	GTNNAC	5 cut(s)	59, 212, 284, 443, 811
Hpy188I	TCNGA	4 cut(s)	397, 495, 598, 892
Hpy188III	TCNNGA	5 cut(s)	314, 737, 758, 964, 1035
Hpy8I	GTNNAC	5 cut(s)	59, 212, 284, 443, 811
HpyCH4III	ACNGT	3 cut(s)	509, 515, 1049
HpyCH4IV	ACGT	6 cut(s)	51, 214, 286, 526, 544, 1018
HpyCH4V	TGCA	5 cut(s)	476, 785, 838, 1081, 1097
HpyF10VI	GCNNNNNNNGC	8 cut(s)	86, 92, 95, 146, 453, 671, 782, 1087
HpyF3I	CTNAG	6 cut(s)	69, 141, 639, 717, 795, 918
HpySE526I	ACGT	6 cut(s)	51, 214, 286, 526, 544, 1018
Hsp92I	GRCGYC	1 cut(s)	445
Hsp92II	CATG	1 cut(s)	1061
KspI	CCGCGG	1 cut(s)	229
Kzo9I	GATC	3 cut(s)	22, 316, 1099
LguI	GCTCTTC	1 cut(s)	690
LmnI	GCTCC	6 cut(s)	85, 159, 484, 530, 551, 712
Lsp1109I	GCAGC	7 cut(s)	52, 336, 652, 769, 850, 853, 901
LweI	GCATC	2 cut(s)	463, 661
MaeII	ACGT	6 cut(s)	51, 214, 286, 526, 544, 1018
MaeIII	GTNAC	2 cut(s)	509, 1064
MalI	GATC	3 cut(s)	24, 318, 1101
MboI	GATC	3 cut(s)	22, 316, 1099
MboII	GAAGA	7 cut(s)	386, 707, 716, 752, 773, 778, 868
MflI	RGATCY	1 cut(s)	1099
MhlI	GDGCHC	2 cut(s)	118, 1110
MluCI	AATT	3 cut(s)	565, 588, 959
MlyI	GAGTC	1 cut(s)	727
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	2 cut(s)	540, 789
MspA1I	CMGCKG	1 cut(s)	228
MspCI	CTTAAG	1 cut(s)	788
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	2 cut(s)	119, 1104
MvaI	CCWGG	1 cut(s)	1104
MvnI	CGCG	2 cut(s)	11, 228
MwoI	GCNNNNNNNGC	8 cut(s)	86, 92, 95, 146, 453, 671, 782, 1087
NciI	CCSGG	1 cut(s)	119
NdeII	GATC	3 cut(s)	22, 316, 1099
NlaIII	CATG	1 cut(s)	1061
NlaIV	GGNNCC	5 cut(s)	81, 115, 420, 430, 714
NmuCI	GTSAC	1 cut(s)	509
NotI	GCGGCCGC	1 cut(s)	223
PaeR7I	CTCGAG	1 cut(s)	1069
PciSI	GCTCTTC	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	1 cut(s)	1024
PdmI	GAANNNNTTC	1 cut(s)	17
PflMI	CCANNNNNTGG	1 cut(s)	1121
PleI	GAGTC	1 cut(s)	727
PpsI	GAGTC	1 cut(s)	727
PpuMI	RGGWCCY	1 cut(s)	419
PshAI	GACNNNNGTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	419
Psp6I	CCWGG	1 cut(s)	1102
PspFI	CCCAGC	2 cut(s)	99, 883
PspGI	CCWGG	1 cut(s)	1102
PspN4I	GGNNCC	5 cut(s)	81, 115, 420, 430, 714
PspPI	GGNCC	4 cut(s)	121, 244, 262, 419
PspPPI	RGGWCCY	1 cut(s)	419
PspXI	VCTCGAGB	1 cut(s)	1069
PstNI	CAGNNNCTG	1 cut(s)	1103
PsuI	RGATCY	1 cut(s)	1099
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SacII	CCGCGG	1 cut(s)	229
SapI	GCTCTTC	1 cut(s)	690
SaqAI	TTAA	2 cut(s)	540, 789
Sau3AI	GATC	3 cut(s)	22, 316, 1099
Sau96I	GGNCC	4 cut(s)	121, 244, 262, 419
SchI	GAGTC	1 cut(s)	727
ScrFI	CCNGG	2 cut(s)	119, 1104
SduI	GDGCHC	2 cut(s)	118, 1110
SfaNI	GCATC	2 cut(s)	463, 661
Sfr274I	CTCGAG	1 cut(s)	1069
Sfr303I	CCGCGG	1 cut(s)	229
SgrBI	CCGCGG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	419
SlaI	CTCGAG	1 cut(s)	1069
SmlI	CTYRAG	4 cut(s)	180, 788, 847, 1069
SmoI	CTYRAG	4 cut(s)	180, 788, 847, 1069
Sse9I	AATT	3 cut(s)	565, 588, 959
SspI	AATATT	1 cut(s)	873
StyD4I	CCNGG	2 cut(s)	117, 1102
StyI	CCWWGG	1 cut(s)	1120
TaaI	ACNGT	3 cut(s)	509, 515, 1049
TaiI	ACGT	6 cut(s)	54, 217, 289, 529, 547, 1021
TaqI	TCGA	2 cut(s)	21, 1070
TasI	AATT	3 cut(s)	565, 588, 959
TauI	GCSGC	6 cut(s)	89, 92, 95, 98, 225, 228
Tru1I	TTAA	2 cut(s)	540, 789
Tru9I	TTAA	2 cut(s)	540, 789
TscAI	CASTG	5 cut(s)	520, 526, 586, 619, 1054
TseFI	GTSAC	1 cut(s)	509
TseI	GCWGC	7 cut(s)	65, 324, 665, 782, 838, 841, 914
Tsp45I	GTSAC	1 cut(s)	509
TspDTI	ATGAA	2 cut(s)	600, 882
TspGWI	ACGGA	1 cut(s)	425
TspRI	CASTG	5 cut(s)	520, 526, 586, 619, 1054
Van91I	CCANNNNNTGG	1 cut(s)	1121
Vha464I	CTTAAG	1 cut(s)	788
VpaK11BI	GGWCC	1 cut(s)	419
XagI	CCTNNNNNAGG	1 cut(s)	975
XapI	RAATTY	1 cut(s)	959
XcmI	CCANNNNNNNNNTGG	1 cut(s)	995
XhoI	CTCGAG	1 cut(s)	1069
XmnI	GAANNNNTTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.