Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001809

Physical Location & Seq

Genomic Coordinates Forward (+)

22537786 .. 22541162

Gene Structure 3377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18335

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCAACCGCGAACCCTTTCGATCTGTTGGGCGACGACGACAACGATGACGTAAGTCAACTCGCTGCTAAGGTGGTGGCTCCTGCCGCCGCCGCCGCCGCCCAGCCCAAGAAGGGTGCTCCGGCCCAAGCTGTTCAGCCTGGGAAGTCCGCCAAGCTCCCCTCCAAGCCTCTCCCTCCTGCTCAAGCTGTGAGGGAAGGTGGCCGTGGAGGTGGCCGTGGCGGCGGCCGAGGGTTTGGTGGTGAGGGGCGTGGATATGGTGAGGGGCGTGGGTATGGTGGCCGTGGACGTGGTGGAGGTGGTGGTGGATATGGTGGATATAATCGGGATCGTGGCAGCGATGAGAACACTAATGGTTTCTCTGGTGGAGGGTACAGCAAACCCGAAGAGGGGGATAGGGATGTTTCTGAAAGGCGTGGTGGCTACGGGGGACCTCGTGGTTCCTTCCGTGGTGGACGCCGTGGTGGCTTTAGCAATGGAGAGGATGCAGAAGGGGAGCGTCCTCGGAGGACATTTGACCGTCACAGTGGCACTGGACGTGGAGCTAACTTTAAACGTGATGGAGCTGGTCGTGGGAATTGGGGAACTCCCACTGATGAAATTGCTTCTGAGATAGAGGCTGGCACTGAAGTTGAGAAGGATGTTGGTGCTGAGAAGCAGTTGGGAGAGAATGAGGCTGCTGATGCCAGCAAGGAGAATCCTGTGGAAGAGCCAGAAGAGAAGGAGCCTGAGGAAAAGGAGATGACTCTGGAAGAGTATGAGAAGGTTCTTGAAGAGAAGAGGAAGGCTCTGGCTGCACTTAAGACTGAGGAGAGAAAGGTTGACTTGGACAAAGAGTTGAAGTCTATGCAGCAGCTCTCAAGCAAGAAGACAAATGATGAAATATTTATCAAGCTGGGTTCTGAAAAGGATAAACGCAAGGAAGCTGCTGAGAAGGAGGAGAGAGCCAAGAAGTCTGTTAGCATAAACGAATTCCTGAAGCCTGCTGAAGGGGAGAACCAGAGGTTCTATGGTGGTCGTAATCGGGGACGTGGAGGCCGTGGTTCAAGAGGCGGAAACAGTGGAGGACATGGAGGTTACTCGAGCAATGTGCAAGCACCGCCCATTGCAGATCCTGGGCACTTTCCATCCCTTGGTGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HABP4_PAI-RBP1 Stm1_N

Protein Analysis

381

Amino Acids

40.13

Weight (kDa)

6.92

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stm1_N	PF09598	1 - 76	8.5e-21	Stm1
HABP4_PAI-RBP1	PF04774	168 - 274	4.8e-30	Hyaluronan / mRNA binding family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16830 AT4G16830 AT4G16830
fragaria_vesca	FvH4_5g20020 FvH4_5g20020 FvH4_5g20020 FvH4_7g10280
malus_domestica	MD02G1213500.v1.1 MD04G1050100.v1.1 MD06G1049800.v1.1 MD07G1109500.v1.1
prunus_persica	Prupe.2G132500_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1
pyrus_communis	pycom04g04410 pycom06g04220 pycom07g09400 pycom12646g00030
rosa_chinensis	RchiOBHm_Chr1g0348031 RchiOBHm_Chr7g0204831 RchiOBHm_Chr7g0204851
rosa_laevigata	RLG00000003428 RLG00000028697
rosa_multiflora	Rmu_sc0002180.1_g000016 Rmu_sc0002180.1_g000023 Rmu_ssc0000263.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252730 Rroxscaffold_4G00307320
rosa_rugosa	Rorug01G0190700 Rorug01G0190800 Rorug07G0086000 Rorug07G0086000 Rorug07G0086100
rosa_samantha	Rh1AG209300 Rh1BG174300 Rh1CG193700 Rh1DG204100 Rh7AG216500 Rh7AG216700 Rh7BG213600 Rh7CG230000 Rh7DG224100 Rh7DG224300
rosa_wichuraiana	Rw1G017440 Rw7G018760 Rw7G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1133
AccII	CGCG	1 cut(s)	11
AclWI	GGATC	2 cut(s)	336, 1106
AcoI	YGGCCR	4 cut(s)	202, 214, 226, 280
AcsI	RAATTY	1 cut(s)	971
AcuI	CTGAAG	3 cut(s)	648, 998, 1008
AcyI	GRCGYC	1 cut(s)	457
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	5 cut(s)	113, 389, 390, 989, 1133
AflII	CTTAAG	1 cut(s)	800
AgsI	TTSAA	3 cut(s)	773, 841, 1047
AjiI	CACGTC	3 cut(s)	290, 539, 1031
AjnI	CCWGG	2 cut(s)	139, 1114
AluBI	AGCT	8 cut(s)	131, 157, 188, 545, 566, 856, 895, 926
AluI	AGCT	8 cut(s)	131, 157, 188, 545, 566, 856, 895, 926
Alw21I	GWGCWC	1 cut(s)	121
AlwI	GGATC	2 cut(s)	336, 1106
AlwNI	CAGNNNCTG	1 cut(s)	1115
Ama87I	CYCGRG	1 cut(s)	1081
AoxI	GGCC	6 cut(s)	123, 202, 214, 226, 280, 1036
ApeKI	GCWGC	7 cut(s)	65, 336, 677, 794, 850, 853, 926
ApoI	RAATTY	1 cut(s)	971
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	124, 431
AsuHPI	GGTGA	2 cut(s)	254, 272
AvaI	CYCGRG	1 cut(s)	1081
AvaII	GGWCC	1 cut(s)	431
AxyI	CCTNAGG	1 cut(s)	729
BaeGI	GKGCMC	1 cut(s)	1122
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	875
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	7 cut(s)	52, 348, 664, 781, 862, 865, 913
BccI	CCATC	2 cut(s)	554, 1135
BceAI	ACGGC	5 cut(s)	189, 201, 267, 444, 1023
BcgI	CGANNNNNNTGC	2 cut(s)	1072, 1106
BciT130I	CCWGG	2 cut(s)	141, 1116
BfrI	CTTAAG	1 cut(s)	800
BglI	GCCNNNNNGGC	2 cut(s)	222, 465
Bme1390I	CCNGG	2 cut(s)	141, 1116
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	1081
BmgBI	CACGTC	3 cut(s)	290, 539, 1031
BmgT120I	GGNCC	2 cut(s)	124, 431
BmiI	GGNNCC	4 cut(s)	81, 432, 442, 726
BmrFI	CCNGG	2 cut(s)	141, 1116
BmsI	GCATC	2 cut(s)	475, 673
BoxI	GACNNNNGTC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	875
BplI	GAGNNNNNCTC	2 cut(s)	772, 804
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	2 cut(s)	168, 844
BsaHI	GRCGYC	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	5 cut(s)	113, 389, 390, 989, 1133
Bse1I	ACTGG	1 cut(s)	538
Bse21I	CCTNAGG	1 cut(s)	729
Bse3DI	GCAATG	3 cut(s)	481, 1093, 1104
BseBI	CCWGG	2 cut(s)	141, 1116
BseGI	GGATG	4 cut(s)	406, 490, 646, 1127
BseLI	CCNNNNNNNGG	5 cut(s)	113, 389, 390, 989, 1133
BseMI	GCAATG	3 cut(s)	481, 1093, 1104
BseMII	CTCAG	5 cut(s)	600, 642, 720, 798, 921
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	2 cut(s)	824, 953
BseSI	GKGCMC	1 cut(s)	1122
BseX3I	CGGCCG	1 cut(s)	226
BseXI	GCAGC	7 cut(s)	52, 348, 664, 781, 862, 865, 913
BseYI	CCCAGC	2 cut(s)	102, 895
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	6 cut(s)	125, 204, 216, 228, 282, 1038
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	1081
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	2 cut(s)	444, 1041
BslI	CCNNNNNNNGG	5 cut(s)	113, 389, 390, 989, 1133
BsmFI	GGGAC	2 cut(s)	444, 1041
BsnI	GGCC	6 cut(s)	125, 204, 216, 228, 282, 1038
BsoBI	CYCGRG	1 cut(s)	1081
Bsp1286I	GDGCHC	2 cut(s)	121, 1122
Bsp143I	GATC	3 cut(s)	22, 328, 1111
BspANI	GGCC	6 cut(s)	125, 204, 216, 228, 282, 1038
BspCNI	CTCAG	5 cut(s)	601, 643, 721, 799, 922
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	4 cut(s)	81, 432, 442, 726
BspPI	GGATC	2 cut(s)	336, 1106
BspQI	GCTCTTC	1 cut(s)	702
BspTI	CTTAAG	1 cut(s)	800
BsrDI	GCAATG	3 cut(s)	481, 1093, 1104
BsrI	ACTGG	1 cut(s)	538
BssMI	GATC	3 cut(s)	22, 328, 1111
BssNI	GRCGYC	1 cut(s)	457
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	1132
Bst2BI	CACGAG	1 cut(s)	435
Bst2UI	CCWGG	2 cut(s)	141, 1116
Bst4CI	ACNGT	3 cut(s)	521, 527, 1061
Bst6I	CTCTTC	6 cut(s)	381, 702, 711, 747, 768, 773
BstACI	GRCGYC	1 cut(s)	457
BstAFI	CTTAAG	1 cut(s)	800
BstC8I	GCNNGC	4 cut(s)	622, 688, 984, 1095
BstDEI	CTNAG	6 cut(s)	69, 609, 651, 729, 807, 930
BstDSI	CCRYGG	6 cut(s)	205, 217, 283, 448, 460, 1039
BstENI	CCTNNNNNAGG	1 cut(s)	987
BstF5I	GGATG	4 cut(s)	406, 490, 646, 1127
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	3 cut(s)	25, 331, 1114
BstMBI	GATC	3 cut(s)	22, 328, 1111
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	9 cut(s)	86, 92, 95, 98, 222, 465, 683, 794, 1099
BstNI	CCWGG	2 cut(s)	141, 1116
BstPAI	GACNNNNGTC	1 cut(s)	54
BstSCI	CCNGG	2 cut(s)	139, 1114
BstSLI	GKGCMC	1 cut(s)	1122
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	7 cut(s)	52, 348, 664, 781, 862, 865, 913
BstV2I	GAAGAC	1 cut(s)	875
BstX2I	RGATCY	1 cut(s)	1111
BstYI	RGATCY	1 cut(s)	1111
BstZI	CGGCCG	1 cut(s)	226
Bsu36I	CCTNAGG	1 cut(s)	729
BsuRI	GGCC	6 cut(s)	125, 204, 216, 228, 282, 1038
BtgI	CCRYGG	6 cut(s)	205, 217, 283, 448, 460, 1039
BtgZI	GCGATG	1 cut(s)	354
BtrI	CACGTC	3 cut(s)	290, 539, 1031
BtsCI	GGATG	4 cut(s)	406, 490, 646, 1127
BtsIMutI	CAGTG	5 cut(s)	531, 532, 591, 624, 1066
Cac8I	GCNNGC	4 cut(s)	622, 688, 984, 1095
CaiI	CAGNNNCTG	1 cut(s)	1115
Cfr13I	GGNCC	2 cut(s)	124, 431
CseI	GACGC	2 cut(s)	465, 488
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	1 cut(s)	1070
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	6 cut(s)	69, 609, 651, 729, 807, 930
DpnI	GATC	3 cut(s)	24, 330, 1113
DpnII	GATC	3 cut(s)	22, 328, 1111
DraI	TTTAAA	1 cut(s)	553
EaeI	YGGCCR	4 cut(s)	202, 214, 226, 280
EagI	CGGCCG	1 cut(s)	226
Eam1104I	CTCTTC	6 cut(s)	381, 702, 711, 747, 768, 773
EarI	CTCTTC	6 cut(s)	381, 702, 711, 747, 768, 773
EciI	GGCGGA	2 cut(s)	139, 1068
EclXI	CGGCCG	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	1132
Eco47I	GGWCC	1 cut(s)	431
Eco52I	CGGCCG	1 cut(s)	226
Eco57I	CTGAAG	3 cut(s)	648, 998, 1008
Eco81I	CCTNAGG	1 cut(s)	729
Eco88I	CYCGRG	1 cut(s)	1081
EcoNI	CCTNNNNNAGG	1 cut(s)	987
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	971
EcoRII	CCWGG	2 cut(s)	139, 1114
EcoT14I	CCWWGG	1 cut(s)	1132
ErhI	CCWWGG	1 cut(s)	1132
FaeI	CATG	1 cut(s)	1073
FaiI	YATR	9 cut(s)	258, 276, 312, 321, 759, 848, 965, 1011, 1071
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	2 cut(s)	444, 1041
FatI	CATG	1 cut(s)	1069
FokI	GGATG	4 cut(s)	413, 497, 653, 1114
GsaI	CCCAGC	2 cut(s)	106, 899
HaeIII	GGCC	6 cut(s)	125, 204, 216, 228, 282, 1038
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	2 cut(s)	465, 488
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	1 cut(s)	1073
HincII	GTYRAC	2 cut(s)	59, 823
HindII	GTYRAC	2 cut(s)	59, 823
HinfI	GANTC	2 cut(s)	697, 745
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	254, 272
Hpy166II	GTNNAC	4 cut(s)	59, 287, 455, 823
Hpy188I	TCNGA	4 cut(s)	409, 507, 610, 904
Hpy188III	TCNNGA	5 cut(s)	326, 749, 770, 976, 1047
Hpy8I	GTNNAC	4 cut(s)	59, 287, 455, 823
Hpy99I	CGWCG	2 cut(s)	38, 41
HpyCH4III	ACNGT	3 cut(s)	521, 527, 1061
HpyCH4IV	ACGT	5 cut(s)	51, 289, 538, 556, 1030
HpyCH4V	TGCA	5 cut(s)	488, 797, 850, 1093, 1109
HpyF10VI	GCNNNNNNNGC	9 cut(s)	86, 92, 95, 98, 222, 465, 683, 794, 1099
HpyF3I	CTNAG	6 cut(s)	69, 609, 651, 729, 807, 930
HpySE526I	ACGT	5 cut(s)	51, 289, 538, 556, 1030
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	1 cut(s)	1073
Kzo9I	GATC	3 cut(s)	22, 328, 1111
LguI	GCTCTTC	1 cut(s)	702
LmnI	GCTCC	7 cut(s)	85, 124, 162, 496, 542, 563, 724
Lsp1109I	GCAGC	7 cut(s)	52, 348, 664, 781, 862, 865, 913
LweI	GCATC	2 cut(s)	475, 673
MaeII	ACGT	5 cut(s)	51, 289, 538, 556, 1030
MaeIII	GTNAC	2 cut(s)	521, 1076
MalI	GATC	3 cut(s)	24, 330, 1113
MboI	GATC	3 cut(s)	22, 328, 1111
MboII	GAAGA	7 cut(s)	398, 719, 728, 764, 785, 790, 880
MflI	RGATCY	1 cut(s)	1111
MhlI	GDGCHC	2 cut(s)	121, 1122
MluCI	AATT	3 cut(s)	577, 600, 971
MlyI	GAGTC	1 cut(s)	739
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	2 cut(s)	552, 801
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	141, 1116
MvaI	CCWGG	2 cut(s)	141, 1116
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	9 cut(s)	86, 92, 95, 98, 222, 465, 683, 794, 1099
NdeII	GATC	3 cut(s)	22, 328, 1111
NlaIII	CATG	1 cut(s)	1073
NlaIV	GGNNCC	4 cut(s)	81, 432, 442, 726
NmeAIII	GCCGAG	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	521
PaeR7I	CTCGAG	1 cut(s)	1081
PciSI	GCTCTTC	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 1036
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	697
PflMI	CCANNNNNTGG	1 cut(s)	1133
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
PpuMI	RGGWCCY	1 cut(s)	431
PshAI	GACNNNNGTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	139, 1114
PspFI	CCCAGC	2 cut(s)	102, 895
PspGI	CCWGG	2 cut(s)	139, 1114
PspN4I	GGNNCC	4 cut(s)	81, 432, 442, 726
PspPI	GGNCC	2 cut(s)	124, 431
PspPPI	RGGWCCY	1 cut(s)	431
PspXI	VCTCGAGB	1 cut(s)	1081
PstNI	CAGNNNCTG	1 cut(s)	1115
PsuI	RGATCY	1 cut(s)	1111
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SapI	GCTCTTC	1 cut(s)	702
SaqAI	TTAA	2 cut(s)	552, 801
Sau3AI	GATC	3 cut(s)	22, 328, 1111
Sau96I	GGNCC	2 cut(s)	124, 431
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	2 cut(s)	141, 1116
SduI	GDGCHC	2 cut(s)	121, 1122
SfaNI	GCATC	2 cut(s)	475, 673
Sfr274I	CTCGAG	1 cut(s)	1081
SinI	GGWCC	1 cut(s)	431
SlaI	CTCGAG	1 cut(s)	1081
SmlI	CTYRAG	4 cut(s)	183, 800, 859, 1081
SmoI	CTYRAG	4 cut(s)	183, 800, 859, 1081
Sse9I	AATT	3 cut(s)	577, 600, 971
SspI	AATATT	1 cut(s)	885
StyD4I	CCNGG	2 cut(s)	139, 1114
StyI	CCWWGG	1 cut(s)	1132
TaaI	ACNGT	3 cut(s)	521, 527, 1061
TaiI	ACGT	5 cut(s)	54, 292, 541, 559, 1033
TaqI	TCGA	2 cut(s)	21, 1082
TasI	AATT	3 cut(s)	577, 600, 971
TauI	GCSGC	7 cut(s)	89, 92, 95, 98, 101, 225, 228
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	2 cut(s)	552, 801
Tru9I	TTAA	2 cut(s)	552, 801
TscAI	CASTG	5 cut(s)	532, 538, 598, 631, 1066
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	7 cut(s)	65, 336, 677, 794, 850, 853, 926
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	2 cut(s)	612, 894
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	5 cut(s)	532, 538, 598, 631, 1066
Van91I	CCANNNNNTGG	1 cut(s)	1133
Vha464I	CTTAAG	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	987
XapI	RAATTY	1 cut(s)	971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1007
XhoI	CTCGAG	1 cut(s)	1081
XmnI	GAANNNNTTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.