Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001809

Physical Location & Seq

Genomic Coordinates Forward (+)

9758829 .. 9762680

Gene Structure 3852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCGACCATGAACCCCTTTGATTTGTTGGGCGATGATGACGCCGAGGACCCATCGCTGCTTGTGGCTGCTCAGCAGCAGAAGCTTGCTGCCGCACCCAAGAAAGCTCAGCCCACCAAACCTGGTGTCGACACCAAGCCCGCTAAGCTTCCTTCCAAGCCCGTAGCTCCTGCTCAGGCTGTGAGGGAATCAAAGAATGAAGGTGGCAGAGGAGGCCGTGGTGGTGGTGGACGTGGATATGGGCGTGGCCGCGGCGGCGGTGGCTACAATCGTGATTCAGCCAATACTGAAAACAACAGTGGGTACAATCGGGAACTAGTCTCTGCTGGTCAGGGTGCTTTTGAGGATGCACAACCTAAAAGGCATTTCTCTGGTGGAGATGGTGATGGAAGGCCGTCTGAAAGGCGTGGCTATGGAGGAGATGGAGATGGGAGGACAACTGAAAGGCGTAGCTATGGTGGTCCTCGTGGTGCTTACCAAGGTGGTCGCCGCGGTGGTTTTGGTAATGGTGAAGTTGGTGATGAGGAGCGCCTGAGGAGGAACTATGAACGTCGTAGTGGGACTGGACGCGGAAATGAACTCAAACGTGAAGGTTCTGGTCGTGGAAACTGGGGATCACAAACTGATGAATTTCCTGAGGTGACTGAAGGAGTCGATGCAACTGAAAAGAATTTGGGTGAAGAGAAGCTTGTGGGGGAGGTTGAGGCAGCAGATGGCAGCAAAGAGACCCCTGCTAATGAACCTGAAGAAAAGGAACCTGAGGAGAAGGAAATGACACTTGAAGAGTATGAGAAGGTGCTTGAAGAGAAAAGGAAGGCCCTGCAGGCACTTAAGACTGAAGAAAGGAAGGTTGATACTAAGGAATTTGAATCTCTGCAACAGATTTCAAACAAGAAAGGGAATGATGATGTCTTCATTAAATTGGGATCTGACAAGGATAAGAAGAAAGAATCTGCTGAAAAGGAAGAAAAGGCAAAAAAGTCTGTCAGCATCAATGAGTTCTTGAAGCCAGCTGAAGGAGAAAGGTTCTCTTACCCATCTCGTGGTGGCCGTGGCCGTGGTCGCGGTCCCAGAGGAGGGTCTAGCAGCAACTACCCACAAAGCAGCGTGAGAGCCCCACCAATTGAAGATCCTTCTCACTTCCCAACCTTGGGTGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HABP4_PAI-RBP1 Stm1_N

Protein Analysis

388

Amino Acids

41.75

Weight (kDa)

6.86

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stm1_N	PF09598	1 - 75	6e-24	Stm1
HABP4_PAI-RBP1	PF04774	179 - 284	5.1e-27	Hyaluronan / mRNA binding family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16830 AT4G16830 AT4G16830
fragaria_vesca	FvH4_5g20020 FvH4_5g20020 FvH4_5g20020 FvH4_7g10280
malus_domestica	MD02G1213500.v1.1 MD04G1050100.v1.1 MD06G1049800.v1.1 MD07G1109500.v1.1
prunus_persica	Prupe.2G132500_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1
pyrus_communis	pycom04g04410 pycom06g04220 pycom07g09400 pycom12646g00030
rosa_chinensis	RchiOBHm_Chr1g0348031 RchiOBHm_Chr7g0204831 RchiOBHm_Chr7g0204851
rosa_laevigata	RLG00000003428 RLG00000028697
rosa_multiflora	Rmu_sc0002180.1_g000016 Rmu_sc0002180.1_g000023 Rmu_ssc0000263.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252730 Rroxscaffold_4G00307320
rosa_rugosa	Rorug01G0190700 Rorug01G0190800 Rorug07G0086000 Rorug07G0086000 Rorug07G0086100
rosa_samantha	Rh1AG209300 Rh1BG174300 Rh1CG193700 Rh1DG204100 Rh7AG216500 Rh7AG216700 Rh7BG213600 Rh7CG230000 Rh7DG224100 Rh7DG224300
rosa_wichuraiana	Rw1G017440 Rw7G018760 Rw7G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1043
AccI	GTMKAC	1 cut(s)	129
AccII	CGCG	4 cut(s)	252, 492, 570, 1065
AclWI	GGATC	3 cut(s)	622, 934, 1124
AcoI	YGGCCR	3 cut(s)	247, 1048, 1054
AcsI	RAATTY	3 cut(s)	629, 670, 863
AcuI	CTGAAG	4 cut(s)	666, 765, 858, 1035
AcyI	GRCGYC	1 cut(s)	42
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	6 cut(s)	1016, 1043, 1076, 1077, 1150, 1151
AflII	CTTAAG	1 cut(s)	830
AgsI	TTSAA	6 cut(s)	782, 803, 869, 888, 1006, 1127
AhlI	ACTAGT	1 cut(s)	316
AjiI	CACGTC	1 cut(s)	233
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	7 cut(s)	85, 107, 148, 167, 453, 688, 1013
AluI	AGCT	7 cut(s)	85, 107, 148, 167, 453, 688, 1013
Alw26I	GTCTC	2 cut(s)	325, 719
AlwI	GGATC	3 cut(s)	622, 934, 1124
AoxI	GGCC	6 cut(s)	214, 247, 392, 816, 1048, 1054
ApeKI	GCWGC	8 cut(s)	58, 68, 76, 89, 707, 717, 1086, 1104
ApoI	RAATTY	3 cut(s)	629, 670, 863
ArsI	GACNNNNNNTTYG	2 cut(s)	111, 143
AspLEI	GCGC	1 cut(s)	531
AspS9I	GGNCC	4 cut(s)	49, 461, 817, 1067
AsuHPI	GGTGA	5 cut(s)	395, 521, 530, 652, 689
AvaII	GGWCC	3 cut(s)	49, 461, 1067
AxyI	CCTNAGG	3 cut(s)	533, 636, 759
BanII	GRGCYC	1 cut(s)	1117
BauI	CACGAG	2 cut(s)	465, 1041
BbsI	GAAGAC	1 cut(s)	904
BbvI	GCAGC	8 cut(s)	45, 55, 76, 88, 719, 729, 1098, 1116
BccI	CCATC	7 cut(s)	61, 374, 380, 416, 422, 707, 1045
BceAI	ACGGC	4 cut(s)	201, 379, 1035, 1041
BciT130I	CCWGG	1 cut(s)	123
BcoDI	GTCTC	2 cut(s)	325, 719
BcuI	ACTAGT	1 cut(s)	316
BfaI	CTAG	2 cut(s)	317, 1083
BfmI	CTRYAG	1 cut(s)	821
BfoI	RGCGCY	1 cut(s)	532
BfrI	CTTAAG	1 cut(s)	830
BglI	GCCNNNNNGGC	2 cut(s)	255, 824
BlpI	GCTNAGC	3 cut(s)	72, 108, 144
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	3 cut(s)	49, 461, 1067
BmgBI	CACGTC	1 cut(s)	233
BmgT120I	GGNCC	4 cut(s)	49, 461, 817, 1067
BmiI	GGNNCC	3 cut(s)	51, 756, 1069
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	619
BmsI	GCATC	3 cut(s)	337, 646, 999
BmuI	ACTGGG	1 cut(s)	619
BpiI	GAAGAC	1 cut(s)	904
Bpu10I	CCTNAGC	1 cut(s)	174
Bpu1102I	GCTNAGC	3 cut(s)	72, 108, 144
BsaHI	GRCGYC	1 cut(s)	42
BsaI	GGTCTC	1 cut(s)	719
BsaJI	CCNNGG	8 cut(s)	45, 217, 250, 478, 490, 1051, 1057, 1149
Bsc4I	CCNNNNNNNGG	6 cut(s)	1016, 1043, 1076, 1077, 1150, 1151
Bse1I	ACTGG	2 cut(s)	568, 614
Bse21I	CCTNAGG	3 cut(s)	533, 636, 759
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	8 cut(s)	45, 217, 250, 478, 490, 1051, 1057, 1149
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	6 cut(s)	1016, 1043, 1076, 1077, 1150, 1151
BseMII	CTCAG	6 cut(s)	86, 122, 188, 524, 627, 750
BseNI	ACTGG	2 cut(s)	568, 614
BseRI	GAGGAG	6 cut(s)	225, 432, 539, 550, 776, 1089
BseXI	GCAGC	8 cut(s)	45, 55, 76, 88, 719, 729, 1098, 1116
Bsh1236I	CGCG	4 cut(s)	252, 492, 570, 1065
BshFI	GGCC	6 cut(s)	216, 249, 394, 818, 1050, 1056
BslFI	GGGAC	2 cut(s)	574, 1053
BslI	CCNNNNNNNGG	6 cut(s)	1016, 1043, 1076, 1077, 1150, 1151
BsmAI	GTCTC	2 cut(s)	325, 719
BsmFI	GGGAC	2 cut(s)	574, 1053
BsnI	GGCC	6 cut(s)	216, 249, 394, 818, 1050, 1056
Bso31I	GGTCTC	1 cut(s)	719
Bsp1286I	GDGCHC	1 cut(s)	1117
Bsp143I	GATC	3 cut(s)	614, 926, 1129
Bsp1720I	GCTNAGC	3 cut(s)	72, 108, 144
BspANI	GGCC	6 cut(s)	216, 249, 394, 818, 1050, 1056
BspCNI	CTCAG	6 cut(s)	85, 121, 187, 525, 628, 751
BspFNI	CGCG	4 cut(s)	252, 492, 570, 1065
BspLI	GGNNCC	3 cut(s)	51, 756, 1069
BspMAI	CTGCAG	1 cut(s)	825
BspPI	GGATC	3 cut(s)	622, 934, 1124
BspTI	CTTAAG	1 cut(s)	830
BspTNI	GGTCTC	1 cut(s)	719
BsrI	ACTGG	2 cut(s)	568, 614
BssECI	CCNNGG	8 cut(s)	45, 217, 250, 478, 490, 1051, 1057, 1149
BssMI	GATC	3 cut(s)	614, 926, 1129
BssNI	GRCGYC	1 cut(s)	42
BssSI	CACGAG	2 cut(s)	465, 1041
BssT1I	CCWWGG	2 cut(s)	478, 1149
Bst2BI	CACGAG	2 cut(s)	465, 1041
Bst2UI	CCWGG	1 cut(s)	123
Bst4CI	ACNGT	1 cut(s)	299
Bst6I	CTCTTC	3 cut(s)	675, 777, 798
BstACI	GRCGYC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	830
BstC8I	GCNNGC	4 cut(s)	87, 141, 825, 1011
BstDEI	CTNAG	8 cut(s)	72, 108, 144, 174, 533, 636, 759, 858
BstDSI	CCRYGG	5 cut(s)	217, 250, 490, 1051, 1057
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	4 cut(s)	252, 492, 570, 1065
BstH2I	RGCGCY	1 cut(s)	532
BstHHI	GCGC	1 cut(s)	531
BstKTI	GATC	3 cut(s)	617, 929, 1132
BstMAI	GTCTC	2 cut(s)	325, 719
BstMBI	GATC	3 cut(s)	614, 926, 1129
BstMWI	GCNNNNNNNGC	7 cut(s)	82, 145, 213, 255, 261, 824, 1062
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSFI	CTRYAG	1 cut(s)	821
BstUI	CGCG	4 cut(s)	252, 492, 570, 1065
BstV1I	GCAGC	8 cut(s)	45, 55, 76, 88, 719, 729, 1098, 1116
BstV2I	GAAGAC	1 cut(s)	904
BstX2I	RGATCY	2 cut(s)	926, 1129
BstYI	RGATCY	2 cut(s)	926, 1129
Bsu36I	CCTNAGG	3 cut(s)	533, 636, 759
BsuRI	GGCC	6 cut(s)	216, 249, 394, 818, 1050, 1056
BtgI	CCRYGG	5 cut(s)	217, 250, 490, 1051, 1057
BtgZI	GCGATG	2 cut(s)	39, 48
BtrI	CACGTC	1 cut(s)	233
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	4 cut(s)	87, 141, 825, 1011
CfoI	GCGC	1 cut(s)	531
Cfr13I	GGNCC	4 cut(s)	49, 461, 817, 1067
Cfr42I	CCGCGG	2 cut(s)	253, 493
CseI	GACGC	2 cut(s)	50, 576
CsiI	ACCWGGT	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	1 cut(s)	10
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	8 cut(s)	72, 108, 144, 174, 533, 636, 759, 858
DpnI	GATC	3 cut(s)	616, 928, 1131
DpnII	GATC	3 cut(s)	614, 926, 1129
EaeI	YGGCCR	3 cut(s)	247, 1048, 1054
Eam1104I	CTCTTC	3 cut(s)	675, 777, 798
EarI	CTCTTC	3 cut(s)	675, 777, 798
Eco130I	CCWWGG	2 cut(s)	478, 1149
Eco24I	GRGCYC	1 cut(s)	1117
Eco31I	GGTCTC	1 cut(s)	719
Eco47I	GGWCC	3 cut(s)	49, 461, 1067
Eco57I	CTGAAG	4 cut(s)	666, 765, 858, 1035
Eco81I	CCTNAGG	3 cut(s)	533, 636, 759
EcoO109I	RGGNCCY	2 cut(s)	49, 817
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	2 cut(s)	478, 1149
EcoT38I	GRGCYC	1 cut(s)	1117
ErhI	CCWWGG	2 cut(s)	478, 1149
FaeI	CATG	1 cut(s)	13
FaiI	YATR	6 cut(s)	11, 240, 414, 456, 546, 789
FalI	AAGNNNNNCTT	4 cut(s)	672, 704, 1015, 1047
FaqI	GGGAC	2 cut(s)	574, 1053
FatI	CATG	1 cut(s)	9
FauI	CCCGC	1 cut(s)	148
FblI	GTMKAC	1 cut(s)	129
FokI	GGATG	1 cut(s)	359
FriOI	GRGCYC	1 cut(s)	1117
FspBI	CTAG	2 cut(s)	317, 1083
GlaI	GCGC	1 cut(s)	530
HaeII	RGCGCY	1 cut(s)	532
HaeIII	GGCC	6 cut(s)	216, 249, 394, 818, 1050, 1056
HgaI	GACGC	2 cut(s)	50, 576
HhaI	GCGC	1 cut(s)	531
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	1 cut(s)	13
Hin6I	GCGC	1 cut(s)	529
HinP1I	GCGC	1 cut(s)	529
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HindIII	AAGCTT	3 cut(s)	83, 146, 686
HinfI	GANTC	5 cut(s)	188, 275, 651, 869, 950
HphI	GGTGA	5 cut(s)	395, 521, 530, 652, 689
Hpy166II	GTNNAC	2 cut(s)	130, 230
Hpy188I	TCNGA	2 cut(s)	400, 931
Hpy188III	TCNNGA	4 cut(s)	272, 311, 635, 1003
Hpy8I	GTNNAC	2 cut(s)	130, 230
Hpy99I	CGWCG	1 cut(s)	555
HpyCH4III	ACNGT	1 cut(s)	299
HpyCH4IV	ACGT	3 cut(s)	232, 550, 586
HpyCH4V	TGCA	4 cut(s)	350, 659, 823, 877
HpyF10VI	GCNNNNNNNGC	7 cut(s)	82, 145, 213, 255, 261, 824, 1062
HpyF3I	CTNAG	8 cut(s)	72, 108, 144, 174, 533, 636, 759, 858
HpySE526I	ACGT	3 cut(s)	232, 550, 586
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	13
HspAI	GCGC	1 cut(s)	529
KspI	CCGCGG	2 cut(s)	253, 493
Kzo9I	GATC	3 cut(s)	614, 926, 1129
LmnI	GCTCC	2 cut(s)	172, 526
Lsp1109I	GCAGC	8 cut(s)	45, 55, 76, 88, 719, 729, 1098, 1116
LweI	GCATC	3 cut(s)	337, 646, 999
MabI	ACCWGGT	1 cut(s)	121
MaeI	CTAG	2 cut(s)	317, 1083
MaeII	ACGT	3 cut(s)	232, 550, 586
MaeIII	GTNAC	1 cut(s)	640
MalI	GATC	3 cut(s)	616, 928, 1131
MboI	GATC	3 cut(s)	614, 926, 1129
MboII	GAAGA	9 cut(s)	692, 758, 794, 815, 851, 904, 955, 977, 1139
MfeI	CAATTG	1 cut(s)	1122
MflI	RGATCY	2 cut(s)	926, 1129
MhlI	GDGCHC	1 cut(s)	1117
MluCI	AATT	5 cut(s)	629, 670, 863, 920, 1122
MlyI	GAGTC	1 cut(s)	660
MseI	TTAA	2 cut(s)	831, 918
MspA1I	CMGCKG	3 cut(s)	252, 492, 1013
MspCI	CTTAAG	1 cut(s)	830
MspR9I	CCNGG	1 cut(s)	123
MunI	CAATTG	1 cut(s)	1122
MvaI	CCWGG	1 cut(s)	123
MvnI	CGCG	4 cut(s)	252, 492, 570, 1065
MwoI	GCNNNNNNNGC	7 cut(s)	82, 145, 213, 255, 261, 824, 1062
NdeII	GATC	3 cut(s)	614, 926, 1129
NlaIII	CATG	1 cut(s)	13
NlaIV	GGNNCC	3 cut(s)	51, 756, 1069
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	1 cut(s)	1048
PfeI	GAWTC	4 cut(s)	188, 275, 869, 950
PflMI	CCANNNNNTGG	1 cut(s)	1043
PleI	GAGTC	1 cut(s)	659
PpsI	GAGTC	1 cut(s)	659
PpuMI	RGGWCCY	1 cut(s)	49
Psp5II	RGGWCCY	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	3 cut(s)	51, 756, 1069
PspPI	GGNCC	4 cut(s)	49, 461, 817, 1067
PspPPI	RGGWCCY	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	825
PsuI	RGATCY	2 cut(s)	926, 1129
PvuII	CAGCTG	1 cut(s)	1013
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SacII	CCGCGG	2 cut(s)	253, 493
SalI	GTCGAC	1 cut(s)	128
SaqAI	TTAA	2 cut(s)	831, 918
Sau3AI	GATC	3 cut(s)	614, 926, 1129
Sau96I	GGNCC	4 cut(s)	49, 461, 817, 1067
SbfI	CCTGCAGG	1 cut(s)	825
SchI	GAGTC	1 cut(s)	660
ScrFI	CCNGG	1 cut(s)	123
SdaI	CCTGCAGG	1 cut(s)	825
SduI	GDGCHC	1 cut(s)	1117
SexAI	ACCWGGT	1 cut(s)	121
SfaNI	GCATC	3 cut(s)	337, 646, 999
SfcI	CTRYAG	1 cut(s)	821
Sfr303I	CCGCGG	2 cut(s)	253, 493
SgrBI	CCGCGG	2 cut(s)	253, 493
SinI	GGWCC	3 cut(s)	49, 461, 1067
SmlI	CTYRAG	1 cut(s)	830
SmoI	CTYRAG	1 cut(s)	830
SpeI	ACTAGT	1 cut(s)	316
Sse8387I	CCTGCAGG	1 cut(s)	825
Sse9I	AATT	5 cut(s)	629, 670, 863, 920, 1122
SspMI	CTAG	2 cut(s)	317, 1083
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	2 cut(s)	478, 1149
TaaI	ACNGT	1 cut(s)	299
TaiI	ACGT	3 cut(s)	235, 553, 589
TaqI	TCGA	2 cut(s)	129, 654
TasI	AATT	5 cut(s)	629, 670, 863, 920, 1122
TauI	GCSGC	5 cut(s)	95, 252, 255, 258, 492
TfiI	GAWTC	4 cut(s)	188, 275, 869, 950
Tru1I	TTAA	2 cut(s)	831, 918
Tru9I	TTAA	2 cut(s)	831, 918
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	8 cut(s)	58, 68, 76, 89, 707, 717, 1086, 1104
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	7 cut(s)	26, 213, 561, 591, 642, 753, 904
TspRI	CASTG	1 cut(s)	304
Van91I	CCANNNNNTGG	1 cut(s)	1043
Vha464I	CTTAAG	1 cut(s)	830
VpaK11BI	GGWCC	3 cut(s)	49, 461, 1067
XapI	RAATTY	3 cut(s)	629, 670, 863
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	2 cut(s)	317, 1083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.