RLG00000003428

Plasminogen activator inhibitor 1 RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0001809
Physical Location & Seq
Reverse (-)
48293688 .. 48296816
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003428

Sequence Viewer

Length: 1137 bp
ATGTTGAAACTAGACATTGGTCATTGGGCCCGTCTCCCCTATCCAATGTCCAAACCAGCCGAACAAGACGAGTCGCCCGCCCACCAACGTATCCACACCGAACACGTGTCCCATCACCCAACACCCAACACCCAACACCCGGCCGCACTCTACCGCGGCCCATTAGGGTTTTTAAGATTGGTGAGGGAAGGGGGGCGTGGAGGTGGGCGTGGCGGCGGCCGTGGGTTTGGTGGTGAAAGCCGTGGATATGGTGAGGGCCGTGGGTATGGTGGTCGTGGACGTGGTGGAGGTGGTGGTGGATATGGTGGATATAATCGGGATCGTGGCGGTGATGAGAACACTAATGGTTTCTCTGGTGGAGGGTACAGCAAACCCGAAGAGGGGGATAGGGATGTTTCTGAAAGGCGTGGTGGCTACGGGGGACCTCGTGGTTCCTTCCGTGGTGGACGCCGTGGTGGCTTTAGCAATGGAGAGGATGCAGAAGGGGAGCGTCCTCGGAGGACATTTGACCGTCACAGTGGCACTGGACGTGGAGCTAACTTTAAACGTGATGGAGCTGGTCGTGGGAATTGGGGAACTCCCACTGATGAAATTGCTTCGGAGATAGAGGCTGGCACTGAAGTTGAGAAGGATGTTGGTGCTGAGAAGCAGTGGGGAGAGAATGAGGCTGCTGATGCCAGCAAGGAGAATCCAGTGGAAGAGCCAGAAGAGAAGGAGCCTGAGGAAAAGGAGATGACTCTTGAAGAGTATGAGAAGGTTCTTGAAGAGAAGAGGAAGGCTCTGGCTGCACTTAAGACTGAGGAGAGAAAGGTTGACTTGGACAAAGAGTTGAAGTCCATGCAGCAGCTCTCAAGCAAGAAGACAAATGATGAAATTTTTATCAAGCTGGGTTCTGAAAAGGATAAACGCAAGGAAGCTGCTGAGAAGGAGGAGAGAGCCAAGAAGTCTGTTAGCATAAACGAATTCCTGAAGCCTGCTGAAGGGGAGAACCAGAGGTTCTATGGTGGTCGTAATCGGGGCCGTGGAGGCCGTGGTTCAAGAGGCGGAAACAGTGGAGGACATGGAGGTTACTCGAGCAATGTGCAAGCACCCCCCATTGCAGATCCTGGGCACTTCCCATCCCTTGGTGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HABP4_PAI-RBP1 Stm1_N

Protein Analysis

379

Amino Acids

40.88

Weight (kDa)

7.86

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HABP4_PAI-RBP1 PF04774 165 - 271 7.1e-30 Hyaluronan / mRNA binding family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1124
AccII CGCG 1 cut(s) 156
AciI CCGC 8 cut(s) 78, 144, 154, 156, 213, 216, 327, 1044
AclWI GGATC 2 cut(s) 327, 1097
AcoI YGGCCR 2 cut(s) 141, 217
AcsI RAATTY 2 cut(s) 873, 962
AcuI CTGAAG 3 cut(s) 639, 989, 999
AcvI CACGTG 1 cut(s) 106
AcyI GRCGYC 1 cut(s) 448
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 5 cut(s) 139, 380, 381, 980, 1124
AflII CTTAAG 1 cut(s) 791
AflIII ACRYGT 2 cut(s) 103, 105
AgsI TTSAA 5 cut(s) 7, 743, 764, 832, 1038
AjiI CACGTC 2 cut(s) 281, 530
AjnI CCWGG 1 cut(s) 1105
AluBI AGCT 5 cut(s) 536, 557, 847, 886, 917
AluI AGCT 5 cut(s) 536, 557, 847, 886, 917
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 2 cut(s) 327, 1097
AlwNI CAGNNNCTG 1 cut(s) 1106
Ama87I CYCGRG 1 cut(s) 1072
AoxI GGCC 7 cut(s) 27, 141, 157, 217, 256, 1018, 1027
ApaI GGGCCC 1 cut(s) 31
ApeKI GCWGC 5 cut(s) 668, 785, 841, 844, 917
ApoI RAATTY 2 cut(s) 873, 962
AspS9I GGNCC 6 cut(s) 27, 28, 158, 256, 422, 1018
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 5 cut(s) 107, 193, 245, 263, 341
AvaI CYCGRG 1 cut(s) 1072
AvaII GGWCC 1 cut(s) 422
AxyI CCTNAGG 1 cut(s) 720
BaeGI GKGCMC 2 cut(s) 31, 1113
BaeI ACNNNNGTAYC 2 cut(s) 73, 106
BanII GRGCYC 1 cut(s) 31
BauI CACGAG 1 cut(s) 426
BbrPI CACGTG 1 cut(s) 106
BbsI GAAGAC 1 cut(s) 866
BbvI GCAGC 5 cut(s) 655, 772, 853, 856, 904
BccI CCATC 3 cut(s) 120, 545, 1126
BceAI ACGGC 6 cut(s) 204, 225, 243, 435, 1005, 1014
BcgI CGANNNNNNTGC 2 cut(s) 1063, 1097
BciT130I CCWGG 1 cut(s) 1107
BciVI GTATCC 1 cut(s) 101
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 11
BfrI CTTAAG 1 cut(s) 791
BfuI GTATCC 1 cut(s) 101
BglI GCCNNNNNGGC 2 cut(s) 456, 1026
BisI GCNGC 9 cut(s) 144, 157, 214, 217, 669, 786, 842, 845, 918
BlsI GCNGC 9 cut(s) 145, 158, 215, 218, 670, 787, 843, 846, 919
Bme1390I CCNGG 2 cut(s) 140, 1107
Bme18I GGWCC 1 cut(s) 422
BmeT110I CYCGRG 1 cut(s) 1072
BmgBI CACGTC 2 cut(s) 281, 530
BmgT120I GGNCC 6 cut(s) 27, 28, 158, 256, 422, 1018
BmiI GGNNCC 5 cut(s) 29, 423, 433, 717, 1019
BmrFI CCNGG 2 cut(s) 140, 1107
BmsI GCATC 2 cut(s) 466, 664
BoxI GACNNNNGTC 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 866
BplI GAGNNNNNCTC 2 cut(s) 763, 795
BpuEI CTTGAG 1 cut(s) 835
BpuMI CCSGG 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 106
BsaHI GRCGYC 1 cut(s) 448
Bsc4I CCNNNNNNNGG 5 cut(s) 139, 380, 381, 980, 1124
Bse1I ACTGG 2 cut(s) 529, 692
Bse21I CCTNAGG 1 cut(s) 720
Bse3DI GCAATG 3 cut(s) 472, 1084, 1095
BseBI CCWGG 1 cut(s) 1107
BseGI GGATG 4 cut(s) 397, 481, 637, 1118
BseLI CCNNNNNNNGG 5 cut(s) 139, 380, 381, 980, 1124
BseMI GCAATG 3 cut(s) 472, 1084, 1095
BseMII CTCAG 4 cut(s) 633, 711, 789, 912
BseNI ACTGG 2 cut(s) 529, 692
BseRI GAGGAG 2 cut(s) 815, 944
BseSI GKGCMC 2 cut(s) 31, 1113
BseX3I CGGCCG 2 cut(s) 141, 217
BseXI GCAGC 5 cut(s) 655, 772, 853, 856, 904
BseYI CCCAGC 1 cut(s) 886
BsgI GTGCAG 1 cut(s) 771
Bsh1236I CGCG 1 cut(s) 156
Bsh1285I CGRYCG 2 cut(s) 144, 220
BshFI GGCC 7 cut(s) 29, 143, 159, 219, 258, 1020, 1029
BsiEI CGRYCG 2 cut(s) 144, 220
BsiHKCI CYCGRG 1 cut(s) 1072
BsiSI CCGG 1 cut(s) 140
BslFI GGGAC 2 cut(s) 94, 435
BslI CCNNNNNNNGG 5 cut(s) 139, 380, 381, 980, 1124
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 94, 435
BsnI GGCC 7 cut(s) 29, 143, 159, 219, 258, 1020, 1029
BsoBI CYCGRG 1 cut(s) 1072
Bsp120I GGGCCC 1 cut(s) 27
Bsp1286I GDGCHC 2 cut(s) 31, 1113
Bsp143I GATC 2 cut(s) 319, 1102
BspACI CCGC 8 cut(s) 78, 144, 154, 156, 213, 216, 327, 1044
BspANI GGCC 7 cut(s) 29, 143, 159, 219, 258, 1020, 1029
BspCNI CTCAG 4 cut(s) 634, 712, 790, 913
BspFNI CGCG 1 cut(s) 156
BspLI GGNNCC 5 cut(s) 29, 423, 433, 717, 1019
BspPI GGATC 2 cut(s) 327, 1097
BspQI GCTCTTC 1 cut(s) 693
BspTI CTTAAG 1 cut(s) 791
BsrDI GCAATG 3 cut(s) 472, 1084, 1095
BsrI ACTGG 2 cut(s) 529, 692
BssMI GATC 2 cut(s) 319, 1102
BssNI GRCGYC 1 cut(s) 448
BssSI CACGAG 1 cut(s) 426
BssT1I CCWWGG 1 cut(s) 1123
Bst2BI CACGAG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 1107
Bst4CI ACNGT 3 cut(s) 512, 518, 1052
Bst6I CTCTTC 6 cut(s) 372, 693, 702, 738, 759, 764
BstACI GRCGYC 1 cut(s) 448
BstAFI CTTAAG 1 cut(s) 791
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 5 cut(s) 78, 613, 679, 975, 1086
BstDEI CTNAG 4 cut(s) 642, 720, 798, 921
BstDSI CCRYGG 8 cut(s) 154, 220, 241, 259, 439, 451, 1021, 1030
BstENI CCTNNNNNAGG 1 cut(s) 978
BstF5I GGATG 4 cut(s) 397, 481, 637, 1118
BstFNI CGCG 1 cut(s) 156
BstKTI GATC 2 cut(s) 322, 1105
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 2 cut(s) 319, 1102
BstMCI CGRYCG 2 cut(s) 144, 220
BstMWI GCNNNNNNNGC 4 cut(s) 456, 674, 785, 1026
BstNI CCWGG 1 cut(s) 1107
BstPAI GACNNNNGTC 1 cut(s) 18
BstSCI CCNGG 2 cut(s) 138, 1105
BstSLI GKGCMC 2 cut(s) 31, 1113
BstUI CGCG 1 cut(s) 156
BstV1I GCAGC 5 cut(s) 655, 772, 853, 856, 904
BstV2I GAAGAC 1 cut(s) 866
BstX2I RGATCY 1 cut(s) 1102
BstYI RGATCY 1 cut(s) 1102
BstZI CGGCCG 2 cut(s) 141, 217
Bsu36I CCTNAGG 1 cut(s) 720
BsuI GTATCC 1 cut(s) 101
BsuRI GGCC 7 cut(s) 29, 143, 159, 219, 258, 1020, 1029
BtgI CCRYGG 8 cut(s) 154, 220, 241, 259, 439, 451, 1021, 1030
BtrI CACGTC 2 cut(s) 281, 530
BtsCI GGATG 4 cut(s) 397, 481, 637, 1118
BtsI GCAGTG 1 cut(s) 656
BtsIMutI CAGTG 7 cut(s) 522, 523, 582, 615, 656, 699, 1057
Cac8I GCNNGC 5 cut(s) 78, 613, 679, 975, 1086
CaiI CAGNNNCTG 1 cut(s) 1106
Cfr13I GGNCC 6 cut(s) 27, 28, 158, 256, 422, 1018
Cfr42I CCGCGG 1 cut(s) 157
CseI GACGC 2 cut(s) 456, 479
Csp6I GTAC 1 cut(s) 364
CviAII CATG 2 cut(s) 838, 1061
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 4 cut(s) 642, 720, 798, 921
DpnI GATC 2 cut(s) 321, 1104
DpnII GATC 2 cut(s) 319, 1102
DraI TTTAAA 1 cut(s) 544
EaeI YGGCCR 2 cut(s) 141, 217
EagI CGGCCG 2 cut(s) 141, 217
Eam1104I CTCTTC 6 cut(s) 372, 693, 702, 738, 759, 764
EarI CTCTTC 6 cut(s) 372, 693, 702, 738, 759, 764
EciI GGCGGA 1 cut(s) 1059
EclXI CGGCCG 2 cut(s) 141, 217
Eco130I CCWWGG 1 cut(s) 1123
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 422
Eco52I CGGCCG 2 cut(s) 141, 217
Eco57I CTGAAG 3 cut(s) 639, 989, 999
Eco72I CACGTG 1 cut(s) 106
Eco81I CCTNAGG 1 cut(s) 720
Eco88I CYCGRG 1 cut(s) 1072
EcoNI CCTNNNNNAGG 1 cut(s) 978
EcoO109I RGGNCCY 1 cut(s) 422
EcoRI GAATTC 1 cut(s) 962
EcoRII CCWGG 1 cut(s) 1105
EcoT14I CCWWGG 1 cut(s) 1123
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 1123
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 2 cut(s) 841, 1064
FaiI YATR 9 cut(s) 249, 267, 303, 312, 750, 839, 956, 1002, 1062
FalI AAGNNNNNCTT 2 cut(s) 800, 832
FaqI GGGAC 2 cut(s) 94, 435
FatI CATG 2 cut(s) 837, 1060
FauI CCCGC 1 cut(s) 85
Fnu4HI GCNGC 9 cut(s) 144, 157, 214, 217, 669, 786, 842, 845, 918
FokI GGATG 4 cut(s) 404, 488, 644, 1105
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 9 cut(s) 144, 157, 214, 217, 669, 786, 842, 845, 918
FspBI CTAG 1 cut(s) 11
GluI GCNGC 9 cut(s) 144, 157, 214, 217, 669, 786, 842, 845, 918
GsaI CCCAGC 1 cut(s) 890
HaeIII GGCC 7 cut(s) 29, 143, 159, 219, 258, 1020, 1029
HapII CCGG 1 cut(s) 140
HgaI GACGC 2 cut(s) 456, 479
Hin1I GRCGYC 1 cut(s) 448
Hin1II CATG 2 cut(s) 841, 1064
HincII GTYRAC 1 cut(s) 814
HindII GTYRAC 1 cut(s) 814
HinfI GANTC 3 cut(s) 71, 688, 736
HpaII CCGG 1 cut(s) 140
HphI GGTGA 5 cut(s) 107, 193, 245, 263, 341
Hpy166II GTNNAC 3 cut(s) 278, 446, 814
Hpy188I TCNGA 4 cut(s) 400, 498, 601, 895
Hpy188III TCNNGA 5 cut(s) 317, 740, 761, 967, 1038
Hpy8I GTNNAC 3 cut(s) 278, 446, 814
HpyAV CCTTC 9 cut(s) 182, 445, 476, 622, 706, 748, 769, 919, 974
HpyCH4III ACNGT 3 cut(s) 512, 518, 1052
HpyCH4IV ACGT 5 cut(s) 88, 105, 280, 529, 547
HpyCH4V TGCA 5 cut(s) 479, 788, 841, 1084, 1100
HpyF10VI GCNNNNNNNGC 4 cut(s) 456, 674, 785, 1026
HpyF3I CTNAG 4 cut(s) 642, 720, 798, 921
HpySE526I ACGT 5 cut(s) 88, 105, 280, 529, 547
Hsp92I GRCGYC 1 cut(s) 448
Hsp92II CATG 2 cut(s) 841, 1064
KspI CCGCGG 1 cut(s) 157
Kzo9I GATC 2 cut(s) 319, 1102
LguI GCTCTTC 1 cut(s) 693
LmnI GCTCC 4 cut(s) 487, 533, 554, 715
Lsp1109I GCAGC 5 cut(s) 655, 772, 853, 856, 904
LweI GCATC 2 cut(s) 466, 664
MaeI CTAG 1 cut(s) 11
MaeII ACGT 5 cut(s) 88, 105, 280, 529, 547
MaeIII GTNAC 2 cut(s) 512, 1067
MalI GATC 2 cut(s) 321, 1104
MboI GATC 2 cut(s) 319, 1102
MboII GAAGA 7 cut(s) 389, 710, 719, 755, 776, 781, 871
MflI RGATCY 1 cut(s) 1102
MhlI GDGCHC 2 cut(s) 31, 1113
MluCI AATT 4 cut(s) 568, 591, 873, 962
MlyI GAGTC 2 cut(s) 80, 730
MseI TTAA 3 cut(s) 173, 543, 792
MspA1I CMGCKG 1 cut(s) 156
MspCI CTTAAG 1 cut(s) 791
MspI CCGG 1 cut(s) 140
MspR9I CCNGG 2 cut(s) 140, 1107
MvaI CCWGG 1 cut(s) 1107
MvnI CGCG 1 cut(s) 156
MwoI GCNNNNNNNGC 4 cut(s) 456, 674, 785, 1026
NciI CCSGG 1 cut(s) 140
NdeII GATC 2 cut(s) 319, 1102
NlaIII CATG 2 cut(s) 841, 1064
NlaIV GGNNCC 5 cut(s) 29, 423, 433, 717, 1019
NmuCI GTSAC 1 cut(s) 512
PaeR7I CTCGAG 1 cut(s) 1072
PciSI GCTCTTC 1 cut(s) 693
PfeI GAWTC 1 cut(s) 688
PflMI CCANNNNNTGG 1 cut(s) 1124
PkrI GCNGC 9 cut(s) 145, 158, 215, 218, 670, 787, 843, 846, 919
PleI GAGTC 2 cut(s) 79, 730
PmaCI CACGTG 1 cut(s) 106
PmlI CACGTG 1 cut(s) 106
PpsI GAGTC 2 cut(s) 79, 730
Ppu21I YACGTR 1 cut(s) 106
PpuMI RGGWCCY 1 cut(s) 422
PshAI GACNNNNGTC 1 cut(s) 18
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 1 cut(s) 1105
PspCI CACGTG 1 cut(s) 106
PspFI CCCAGC 1 cut(s) 886
PspGI CCWGG 1 cut(s) 1105
PspN4I GGNNCC 5 cut(s) 29, 423, 433, 717, 1019
PspOMI GGGCCC 1 cut(s) 27
PspPI GGNCC 6 cut(s) 27, 28, 158, 256, 422, 1018
PspPPI RGGWCCY 1 cut(s) 422
PspXI VCTCGAGB 1 cut(s) 1072
PstNI CAGNNNCTG 1 cut(s) 1106
PsuI RGATCY 1 cut(s) 1102
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
SacII CCGCGG 1 cut(s) 157
SapI GCTCTTC 1 cut(s) 693
SaqAI TTAA 3 cut(s) 173, 543, 792
SatI GCNGC 9 cut(s) 144, 157, 214, 217, 669, 786, 842, 845, 918
Sau3AI GATC 2 cut(s) 319, 1102
Sau96I GGNCC 6 cut(s) 27, 28, 158, 256, 422, 1018
SchI GAGTC 2 cut(s) 80, 730
ScrFI CCNGG 2 cut(s) 140, 1107
SduI GDGCHC 2 cut(s) 31, 1113
SfaNI GCATC 2 cut(s) 466, 664
SfiI GGCCNNNNNGGCC 1 cut(s) 1026
Sfr274I CTCGAG 1 cut(s) 1072
Sfr303I CCGCGG 1 cut(s) 157
SgrBI CCGCGG 1 cut(s) 157
SinI GGWCC 1 cut(s) 422
SlaI CTCGAG 1 cut(s) 1072
SmlI CTYRAG 3 cut(s) 791, 850, 1072
SmoI CTYRAG 3 cut(s) 791, 850, 1072
Sse9I AATT 4 cut(s) 568, 591, 873, 962
SsiI CCGC 8 cut(s) 78, 144, 154, 156, 213, 216, 327, 1044
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 138, 1105
StyI CCWWGG 1 cut(s) 1123
TaaI ACNGT 3 cut(s) 512, 518, 1052
TaiI ACGT 5 cut(s) 91, 108, 283, 532, 550
TaqI TCGA 1 cut(s) 1073
TasI AATT 4 cut(s) 568, 591, 873, 962
TauI GCSGC 4 cut(s) 146, 159, 216, 219
TfiI GAWTC 1 cut(s) 688
Tru1I TTAA 3 cut(s) 173, 543, 792
Tru9I TTAA 3 cut(s) 173, 543, 792
TscAI CASTG 7 cut(s) 523, 529, 589, 622, 656, 699, 1057
TseFI GTSAC 1 cut(s) 512
TseI GCWGC 5 cut(s) 668, 785, 841, 844, 917
Tsp45I GTSAC 1 cut(s) 512
TspDTI ATGAA 2 cut(s) 603, 885
TspGWI ACGGA 1 cut(s) 428
TspRI CASTG 7 cut(s) 523, 529, 589, 622, 656, 699, 1057
Van91I CCANNNNNTGG 1 cut(s) 1124
Vha464I CTTAAG 1 cut(s) 791
VpaK11BI GGWCC 1 cut(s) 422
XagI CCTNNNNNAGG 1 cut(s) 978
XapI RAATTY 2 cut(s) 873, 962
XcmI CCANNNNNNNNNTGG 1 cut(s) 998
XhoI CTCGAG 1 cut(s) 1072
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.