pycom06g04220

Plasminogen activator inhibitor 1 RNA-binding

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Reverse (-)
5290775 .. 5293380
2606 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g04220.5

Sequence Viewer

Length: 1107 bp
ATGGCAACCGCGAACCCTTTCGATCTCTTGGGGGATGACGACAATGAGGACCCAAGTCAACTTCTCGCTGCTCAGCAGCAGAAGCTGCCGGCGGCGCAGCCCAAGAAACCCCAGCAGACCCAGCCTGCTCAGCCTGCTAAGCTTCCCTCCAAGCCACTCCCCCCTGCACAATCTGTGAGGGAGGGAAAGTATGAAGGTGGCCGTGGAGGTGGAGGTGGCCGTGGTAGTGGCGGTGGACGTGGGTTCAGTCGTGGGCGTGGTGGAGGAGGTGGTGGTGGTGGTGGATTTAATCGAGATCCAATCAGCAATGAGAACACCAATGGTTTTTCTGGTGGCTACAGACCATCTGAAGAGGGAGATGGGAAAGCCTCTGAAAGACGTGGTGGCTATGGTGCTCCTCGTGGCTCCTTCCGTGGTGGGCGTCGTGGTGGTTACAAGAATGGTGAGGATGGTGAAGGGGAACGCCCTCGGAGGGTTTTTGATCGTCACAGTGGTACAGGACGTGGGAGTGATATTAAGCGTGAAGGGTCTGGACGGGGGAATTGGGGAACACCCTCTGATGACATTGCTCCGGAGATTGAGGAGCCTGGCACTGAAACTGAGAAGAATGTTGGTACTGAGAAGCAGTCGGGAGAGAATGAGACTGCAGATGCCAATAAGGATAGCACTGTGAATGAGACGGAAGAGAAGGAGCCTGAGGAGGAGAAGGAAATGACATTGGAAGAGTACGAGAAGGTGCGTGAAGAGAAGAGGAAGGCTCTGCTTGCATTGAAGACTGAGGAAAGAAAGGTTGATGTAGACAAAGACTTGAAGGCCATGCAGCTGCTTTCAAACAAGAAGGAAAATAATGAAATCTTTATCAAGCTGGGTTCTGAGAAGGATAAGCGCAAGGAGGCTGCTGAGAAAGAAGAGAGAGCCAAGAAGTCTGTTAGCATTAATCAGTTTCTGAAGCCCACTGAGGGTGAGAGGTACTATGGTGGTCGCGGTCGAGGCCGTGGTCGTGGGCCAAGAGGTGGATACAGTGGAGGACCTGGAGGTTATTCGAGCAATGTGGCAGCTCCTTCCATTGAGGATCCCGGGCAGTTCCCCTCCCTCGGTGGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

369

Amino Acids

39.36

Weight (kDa)

7.71

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1013
AccI GTMKAC 1 cut(s) 798
AccII CGCG 2 cut(s) 11, 984
AccIII TCCGGA 1 cut(s) 571
AciI CCGC 4 cut(s) 9, 92, 231, 984
AclWI GGATC 3 cut(s) 290, 1067, 1080
AcoI YGGCCR 2 cut(s) 199, 217
AcuI CTGAAG 2 cut(s) 369, 968
AcyI GRCGYC 1 cut(s) 421
AfaI GTAC 4 cut(s) 496, 616, 728, 971
AfiI CCNNNNNNNGG 5 cut(s) 472, 959, 1013, 1094, 1098
AgsI TTSAA 3 cut(s) 772, 811, 831
AjiI CACGTC 3 cut(s) 239, 380, 503
AjnI CCWGG 2 cut(s) 586, 1030
AluBI AGCT 5 cut(s) 85, 142, 823, 865, 1058
AluI AGCT 5 cut(s) 85, 142, 823, 865, 1058
Alw21I GWGCWC 1 cut(s) 397
Alw26I GTCTC 2 cut(s) 635, 671
AlwI GGATC 3 cut(s) 290, 1067, 1080
AlwNI CAGNNNCTG 2 cut(s) 85, 946
Ama87I CYCGRG 1 cut(s) 1076
Aor13HI TCCGGA 1 cut(s) 571
AoxI GGCC 5 cut(s) 199, 217, 813, 991, 1004
ApeKI GCWGC 8 cut(s) 68, 76, 85, 97, 820, 823, 896, 1055
AseI ATTAAT 1 cut(s) 936
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 2 cut(s) 97, 888
AspS9I GGNCC 3 cut(s) 49, 1004, 1028
AsuC2I CCSGG 2 cut(s) 1077, 1078
AsuHPI GGTGA 3 cut(s) 455, 464, 974
AvaI CYCGRG 1 cut(s) 1076
AvaII GGWCC 2 cut(s) 49, 1028
AxyI CCTNAGG 1 cut(s) 696
BaeI ACNNNNGTAYC 2 cut(s) 961, 994
BamHI GGATCC 1 cut(s) 1072
BauI CACGAG 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 779
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 8 cut(s) 55, 72, 88, 109, 810, 832, 883, 1067
BccI CCATC 3 cut(s) 352, 353, 443
BceAI ACGGC 3 cut(s) 186, 204, 978
BciT130I CCWGG 2 cut(s) 588, 1032
BciVI GTATCC 1 cut(s) 1010
BcnI CCSGG 2 cut(s) 1077, 1078
BcoDI GTCTC 2 cut(s) 635, 671
BfmI CTRYAG 2 cut(s) 337, 645
BfuI GTATCC 1 cut(s) 1010
BisI GCNGC 9 cut(s) 69, 77, 86, 93, 98, 821, 824, 897, 1056
BlpI GCTNAGC 3 cut(s) 72, 129, 138
BlsI GCNGC 9 cut(s) 70, 78, 87, 94, 99, 822, 825, 898, 1057
Bme1390I CCNGG 4 cut(s) 588, 1032, 1077, 1078
Bme18I GGWCC 2 cut(s) 49, 1028
BmeT110I CYCGRG 1 cut(s) 1076
BmgBI CACGTC 3 cut(s) 239, 380, 503
BmgT120I GGNCC 3 cut(s) 49, 1004, 1028
BmiI GGNNCC 5 cut(s) 51, 406, 585, 693, 1074
BmrFI CCNGG 4 cut(s) 588, 1032, 1077, 1078
BmsI GCATC 1 cut(s) 640
BoxI GACNNNNGTC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 779
BplI GAGNNNNNCTC 2 cut(s) 742, 774
BpmI CTGGAG 1 cut(s) 1053
Bpu1102I GCTNAGC 3 cut(s) 72, 129, 138
BpuMI CCSGG 2 cut(s) 1077, 1078
BsaHI GRCGYC 1 cut(s) 421
BsaJI CCNNGG 7 cut(s) 202, 220, 412, 467, 994, 1076, 1093
BsaWI WCCGGW 1 cut(s) 571
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 5 cut(s) 472, 959, 1013, 1094, 1098
Bse118I RCCGGY 1 cut(s) 88
Bse21I CCTNAGG 1 cut(s) 696
Bse3DI GCAATG 3 cut(s) 313, 564, 1054
BseAI TCCGGA 1 cut(s) 571
BseBI CCWGG 2 cut(s) 588, 1032
BseDI CCNNGG 7 cut(s) 202, 220, 412, 467, 994, 1076, 1093
BseGI GGATG 2 cut(s) 40, 454
BseLI CCNNNNNNNGG 5 cut(s) 472, 959, 1013, 1094, 1098
BseMI GCAATG 3 cut(s) 313, 564, 1054
BseMII CTCAG 9 cut(s) 86, 143, 591, 609, 687, 768, 864, 891, 948
BseRI GAGGAG 5 cut(s) 279, 387, 596, 713, 716
BseXI GCAGC 8 cut(s) 55, 72, 88, 109, 810, 832, 883, 1067
BseYI CCCAGC 3 cut(s) 111, 120, 865
BsgI GTGCAG 1 cut(s) 150
Bsh1236I CGCG 2 cut(s) 11, 984
Bsh1285I CGRYCG 1 cut(s) 988
BshFI GGCC 5 cut(s) 201, 219, 815, 993, 1006
BsiEI CGRYCG 1 cut(s) 988
BsiHKAI GWGCWC 1 cut(s) 397
BsiHKCI CYCGRG 1 cut(s) 1076
BsiSI CCGG 3 cut(s) 89, 572, 1077
BslI CCNNNNNNNGG 5 cut(s) 472, 959, 1013, 1094, 1098
BsmAI GTCTC 2 cut(s) 635, 671
BsmBI CGTCTC 1 cut(s) 671
BsnI GGCC 5 cut(s) 201, 219, 815, 993, 1006
BsoBI CYCGRG 1 cut(s) 1076
Bsp1286I GDGCHC 1 cut(s) 397
Bsp13I TCCGGA 1 cut(s) 571
Bsp143I GATC 4 cut(s) 22, 295, 481, 1072
Bsp1720I GCTNAGC 3 cut(s) 72, 129, 138
BspACI CCGC 4 cut(s) 9, 92, 231, 984
BspANI GGCC 5 cut(s) 201, 219, 815, 993, 1006
BspCNI CTCAG 9 cut(s) 85, 142, 592, 610, 688, 769, 865, 892, 949
BspEI TCCGGA 1 cut(s) 571
BspFNI CGCG 2 cut(s) 11, 984
BspLI GGNNCC 5 cut(s) 51, 406, 585, 693, 1074
BspMAI CTGCAG 1 cut(s) 649
BspPI GGATC 3 cut(s) 290, 1067, 1080
BsrDI GCAATG 3 cut(s) 313, 564, 1054
BsrFI RCCGGY 1 cut(s) 88
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 7 cut(s) 202, 220, 412, 467, 994, 1076, 1093
BssMI GATC 4 cut(s) 22, 295, 481, 1072
BssNI GRCGYC 1 cut(s) 421
BssSI CACGAG 1 cut(s) 399
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 2 cut(s) 588, 1032
Bst4CI ACNGT 3 cut(s) 491, 670, 1022
Bst6I CTCTTC 6 cut(s) 345, 678, 717, 738, 743, 903
BstACI GRCGYC 1 cut(s) 421
BstAPI GCANNNNNTGC 1 cut(s) 85
BstC8I GCNNGC 4 cut(s) 90, 126, 135, 765
BstDSI CCRYGG 4 cut(s) 202, 220, 412, 994
BstF5I GGATG 2 cut(s) 40, 454
BstFNI CGCG 2 cut(s) 11, 984
BstHHI GCGC 2 cut(s) 97, 888
BstKTI GATC 4 cut(s) 25, 298, 484, 1075
BstMAI GTCTC 2 cut(s) 635, 671
BstMBI GATC 4 cut(s) 22, 295, 481, 1072
BstMCI CGRYCG 1 cut(s) 988
BstMWI GCNNNNNNNGC 9 cut(s) 82, 85, 94, 121, 130, 134, 139, 764, 990
BstNI CCWGG 2 cut(s) 588, 1032
BstPAI GACNNNNGTC 1 cut(s) 54
BstSCI CCNGG 4 cut(s) 586, 1030, 1075, 1076
BstSFI CTRYAG 2 cut(s) 337, 645
BstUI CGCG 2 cut(s) 11, 984
BstV1I GCAGC 8 cut(s) 55, 72, 88, 109, 810, 832, 883, 1067
BstV2I GAAGAC 1 cut(s) 779
BstX2I RGATCY 2 cut(s) 295, 1072
BstYI RGATCY 2 cut(s) 295, 1072
Bsu36I CCTNAGG 1 cut(s) 696
BsuI GTATCC 1 cut(s) 1010
BsuRI GGCC 5 cut(s) 201, 219, 815, 993, 1006
BtgI CCRYGG 4 cut(s) 202, 220, 412, 994
BtrI CACGTC 3 cut(s) 239, 380, 503
BtsCI GGATG 2 cut(s) 40, 454
BtsIMutI CAGTG 5 cut(s) 496, 591, 666, 954, 1027
Cac8I GCNNGC 4 cut(s) 90, 126, 135, 765
CaiI CAGNNNCTG 2 cut(s) 85, 946
CfoI GCGC 2 cut(s) 97, 888
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 3 cut(s) 49, 1004, 1028
Cfr9I CCCGGG 1 cut(s) 1076
CseI GACGC 1 cut(s) 410
Csp6I GTAC 4 cut(s) 495, 615, 727, 970
CviAII CATG 1 cut(s) 817
CviQI GTAC 4 cut(s) 495, 615, 727, 970
DpnI GATC 4 cut(s) 24, 297, 483, 1074
DpnII GATC 4 cut(s) 22, 295, 481, 1072
EaeI YGGCCR 2 cut(s) 199, 217
Eam1104I CTCTTC 6 cut(s) 345, 678, 717, 738, 743, 903
EarI CTCTTC 6 cut(s) 345, 678, 717, 738, 743, 903
Eco47I GGWCC 2 cut(s) 49, 1028
Eco57I CTGAAG 2 cut(s) 369, 968
Eco81I CCTNAGG 1 cut(s) 696
Eco88I CYCGRG 1 cut(s) 1076
EcoO109I RGGNCCY 2 cut(s) 49, 1028
EcoRII CCWGG 2 cut(s) 586, 1030
Esp3I CGTCTC 1 cut(s) 671
FaeI CATG 1 cut(s) 820
FaiI YATR 4 cut(s) 192, 390, 818, 975
FatI CATG 1 cut(s) 816
FblI GTMKAC 1 cut(s) 798
Fnu4HI GCNGC 9 cut(s) 69, 77, 86, 93, 98, 821, 824, 897, 1056
FokI GGATG 2 cut(s) 47, 461
Fsp4HI GCNGC 9 cut(s) 69, 77, 86, 93, 98, 821, 824, 897, 1056
GlaI GCGC 2 cut(s) 96, 887
GluI GCNGC 9 cut(s) 69, 77, 86, 93, 98, 821, 824, 897, 1056
GsaI CCCAGC 3 cut(s) 115, 124, 869
GsuI CTGGAG 1 cut(s) 1053
HaeIII GGCC 5 cut(s) 201, 219, 815, 993, 1006
HapII CCGG 3 cut(s) 89, 572, 1077
HgaI GACGC 1 cut(s) 410
HhaI GCGC 2 cut(s) 97, 888
Hin1I GRCGYC 1 cut(s) 421
Hin1II CATG 1 cut(s) 820
Hin6I GCGC 2 cut(s) 95, 886
HinP1I GCGC 2 cut(s) 95, 886
HincII GTYRAC 1 cut(s) 59
HindII GTYRAC 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 140
HpaII CCGG 3 cut(s) 89, 572, 1077
HphI GGTGA 3 cut(s) 455, 464, 974
Hpy166II GTNNAC 3 cut(s) 59, 236, 799
Hpy188I TCNGA 6 cut(s) 349, 373, 471, 559, 874, 948
Hpy188III TCNNGA 4 cut(s) 293, 531, 572, 630
Hpy8I GTNNAC 3 cut(s) 59, 236, 799
Hpy99I CGWCG 1 cut(s) 426
HpyCH4III ACNGT 3 cut(s) 491, 670, 1022
HpyCH4IV ACGT 3 cut(s) 238, 379, 502
HpyCH4V TGCA 4 cut(s) 167, 647, 767, 820
HpyF10VI GCNNNNNNNGC 9 cut(s) 82, 85, 94, 121, 130, 134, 139, 764, 990
HpySE526I ACGT 3 cut(s) 238, 379, 502
Hsp92I GRCGYC 1 cut(s) 421
Hsp92II CATG 1 cut(s) 820
HspAI GCGC 2 cut(s) 95, 886
Kpn2I TCCGGA 1 cut(s) 571
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Kzo9I GATC 4 cut(s) 22, 295, 481, 1072
LmnI GCTCC 6 cut(s) 400, 410, 574, 583, 691, 1063
Lsp1109I GCAGC 8 cut(s) 55, 72, 88, 109, 810, 832, 883, 1067
LweI GCATC 1 cut(s) 640
MaeII ACGT 3 cut(s) 238, 379, 502
MaeIII GTNAC 2 cut(s) 431, 485
MalI GATC 4 cut(s) 24, 297, 483, 1074
MboI GATC 4 cut(s) 22, 295, 481, 1072
MboII GAAGA 8 cut(s) 362, 616, 695, 734, 755, 760, 784, 920
MflI RGATCY 2 cut(s) 295, 1072
MhlI GDGCHC 1 cut(s) 397
MluCI AATT 1 cut(s) 541
MroI TCCGGA 1 cut(s) 571
MroNI GCCGGC 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 3 cut(s) 288, 516, 936
MspA1I CMGCKG 1 cut(s) 823
MspI CCGG 3 cut(s) 89, 572, 1077
MspR9I CCNGG 4 cut(s) 588, 1032, 1077, 1078
MvaI CCWGG 2 cut(s) 588, 1032
MvnI CGCG 2 cut(s) 11, 984
MwoI GCNNNNNNNGC 9 cut(s) 82, 85, 94, 121, 130, 134, 139, 764, 990
NaeI GCCGGC 1 cut(s) 90
NciI CCSGG 2 cut(s) 1077, 1078
NdeII GATC 4 cut(s) 22, 295, 481, 1072
NgoMIV GCCGGC 1 cut(s) 88
NlaIII CATG 1 cut(s) 820
NlaIV GGNNCC 5 cut(s) 51, 406, 585, 693, 1074
NmuCI GTSAC 1 cut(s) 485
PdiI GCCGGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 17
PflMI CCANNNNNTGG 1 cut(s) 1013
PkrI GCNGC 9 cut(s) 70, 78, 87, 94, 99, 822, 825, 898, 1057
PpuMI RGGWCCY 2 cut(s) 49, 1028
PshAI GACNNNNGTC 1 cut(s) 54
PshBI ATTAAT 1 cut(s) 936
Psp5II RGGWCCY 2 cut(s) 49, 1028
Psp6I CCWGG 2 cut(s) 586, 1030
PspFI CCCAGC 3 cut(s) 111, 120, 865
PspGI CCWGG 2 cut(s) 586, 1030
PspN4I GGNNCC 5 cut(s) 51, 406, 585, 693, 1074
PspPI GGNCC 3 cut(s) 49, 1004, 1028
PspPPI RGGWCCY 2 cut(s) 49, 1028
PstI CTGCAG 1 cut(s) 649
PstNI CAGNNNCTG 2 cut(s) 85, 946
PsuI RGATCY 2 cut(s) 295, 1072
PvuII CAGCTG 1 cut(s) 823
RsaI GTAC 4 cut(s) 496, 616, 728, 971
RsaNI GTAC 4 cut(s) 495, 615, 727, 970
SaqAI TTAA 3 cut(s) 288, 516, 936
SatI GCNGC 9 cut(s) 69, 77, 86, 93, 98, 821, 824, 897, 1056
Sau3AI GATC 4 cut(s) 22, 295, 481, 1072
Sau96I GGNCC 3 cut(s) 49, 1004, 1028
ScrFI CCNGG 4 cut(s) 588, 1032, 1077, 1078
SduI GDGCHC 1 cut(s) 397
SfaNI GCATC 1 cut(s) 640
SfcI CTRYAG 2 cut(s) 337, 645
SinI GGWCC 2 cut(s) 49, 1028
SmaI CCCGGG 1 cut(s) 1078
Sse9I AATT 1 cut(s) 541
SsiI CCGC 4 cut(s) 9, 92, 231, 984
StyD4I CCNGG 4 cut(s) 586, 1030, 1075, 1076
TaaI ACNGT 3 cut(s) 491, 670, 1022
TaiI ACGT 3 cut(s) 241, 382, 505
TaqI TCGA 4 cut(s) 21, 292, 988, 1043
TasI AATT 1 cut(s) 541
TauI GCSGC 1 cut(s) 95
Tru1I TTAA 3 cut(s) 288, 516, 936
Tru9I TTAA 3 cut(s) 288, 516, 936
TscAI CASTG 5 cut(s) 496, 598, 673, 961, 1027
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 8 cut(s) 68, 76, 85, 97, 820, 823, 896, 1055
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 2 cut(s) 207, 864
TspGWI ACGGA 2 cut(s) 401, 695
TspMI CCCGGG 1 cut(s) 1076
TspRI CASTG 5 cut(s) 496, 598, 673, 961, 1027
Van91I CCANNNNNTGG 1 cut(s) 1013
VpaK11BI GGWCC 2 cut(s) 49, 1028
VspI ATTAAT 1 cut(s) 936
XmaI CCCGGG 1 cut(s) 1076
XmiI GTMKAC 1 cut(s) 798
XmnI GAANNNNTTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.