Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001809

Physical Location & Seq

Genomic Coordinates Forward (+)

23301128 .. 23312206

Gene Structure 11079 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1213500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGGCGACCATGAACCCGTTTGATTTGTTGGGTGACGATGATGCCGAGGACCCGTCGCAGCTGATCGCAGCTCAGCAGCAGAAACTGGCTGCAGCGCCCAAGAAGGTTGTCCCTCCTCAGCCGATCAAGGCAGGGGCTCAGGTTCAAGAGACCAAGCCGGCTAAGCTGCCTTCCAAGCCAGCACCTCCTGCTCAGGCTGTGAGGGATGCAAAGAATGAAGCTGGTCGTGGGGGAGGTCGTGGAGGTGGACGTGGATATGGTTATAGCCGTGGACGTGGTGGTGGTGGTTACAACCGTGAATCATCCAATTATGAGAACACATTCAGCAACAGTGGAGCTCCTCCTGGTCAAGGTGCTCTTGAAGATGGTGATGGGAAGGAAAGGCATGGCTATGGTGGACCTCGTGGGCCTTACCGTGGTGGTCGCCGCGGTGGTTTTGGAAATGCAGAAGTTGGTGATGGAGAACGCCGCAGGGTATTTGAACGCCGTAGTGGGACTGGACGCGGAAGTGAAGTCAAACGCGAAGGTTCTGGTCGTGGCAACTGGGGGTCACAAGCTGATGAACTTTCTGAGCTGACCGAAGAAGTTGCCAATGTAACTGAAAAGCATTTGGGTGATGAGAAGCCTGTGGAAGAGGGAGATGCAGCAGATGGCAAGAAAGATACCCCTGCTAATGAACCTGAAGAAAAAGAACCTGAGGATAAGGAAATGACACTTGAAGAGTATCAGAAGGTGCTCGAAGAGAAGAGGAAGGCCCTTCAGGCACTTAAGACTACGGAGGAAAGGAAGGTTGATGCCAAGGAATTTGAATCATTCCAACAGCTATCAAACAAGAAGGCCAATGATGAAATCTTCATTAAATTGGGCTCTGACAAGGATAAGAAGAAAGATTCTGAGAAGGAAGAAAAATCCAAAAAGTCTGTCAGCATCAATGAGTTCTTAAAGCCCGCTGAAGGAGAGAGGTTCTACAACCCAGGTGGTCGTGGCCGTGGCCGTGGTCGTGGTTCCAAAGGAGGAGGGTTTAGCAGCAATTACTCGCATAGCAGTGCGGCAGCCCCATCCATTGAAGACCCTGGGCAGTTCCCTACCTTGGGCGGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HABP4_PAI-RBP1 Stm1_N

Protein Analysis

368

Amino Acids

39.4

Weight (kDa)

6.91

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stm1_N	PF09598	1 - 81	8.3e-24	Stm1
HABP4_PAI-RBP1	PF04774	157 - 261	2.3e-26	Hyaluronan / mRNA binding family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16830 AT4G16830 AT4G16830
fragaria_vesca	FvH4_5g20020 FvH4_5g20020 FvH4_5g20020 FvH4_7g10280
malus_domestica	MD02G1213500.v1.1 MD04G1050100.v1.1 MD06G1049800.v1.1 MD07G1109500.v1.1
prunus_persica	Prupe.2G132500_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1
pyrus_communis	pycom04g04410 pycom06g04220 pycom07g09400 pycom12646g00030
rosa_chinensis	RchiOBHm_Chr1g0348031 RchiOBHm_Chr7g0204831 RchiOBHm_Chr7g0204851
rosa_laevigata	RLG00000003428 RLG00000028697
rosa_multiflora	Rmu_sc0002180.1_g000016 Rmu_sc0002180.1_g000023 Rmu_ssc0000263.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252730 Rroxscaffold_4G00307320
rosa_rugosa	Rorug01G0190700 Rorug01G0190800 Rorug07G0086000 Rorug07G0086000 Rorug07G0086100
rosa_samantha	Rh1AG209300 Rh1BG174300 Rh1CG193700 Rh1DG204100 Rh7AG216500 Rh7AG216700 Rh7BG213600 Rh7CG230000 Rh7DG224100 Rh7DG224300
rosa_wichuraiana	Rw1G017440 Rw7G018760 Rw7G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	429, 504, 522
AciI	CCGC	7 cut(s)	427, 429, 469, 504, 948, 1049, 1095
AcoI	YGGCCR	2 cut(s)	985, 991
AcsI	RAATTY	1 cut(s)	803
AcuI	CTGAAG	3 cut(s)	702, 743, 972
AfiI	CCNNNNNNNGG	5 cut(s)	350, 416, 953, 1090, 1091
AflII	CTTAAG	1 cut(s)	767
AgsI	TTSAA	6 cut(s)	146, 362, 482, 719, 809, 1067
AjiI	CACGTC	2 cut(s)	251, 275
AjnI	CCWGG	3 cut(s)	343, 973, 1072
AluBI	AGCT	8 cut(s)	61, 71, 166, 221, 338, 557, 574, 823
AluI	AGCT	8 cut(s)	61, 71, 166, 221, 338, 557, 574, 823
Alw21I	GWGCWC	3 cut(s)	340, 358, 738
Alw26I	GTCTC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	5 cut(s)	407, 753, 837, 985, 991
ApeKI	GCWGC	9 cut(s)	58, 68, 76, 89, 92, 166, 644, 1026, 1052
ApoI	RAATTY	1 cut(s)	803
ArsI	GACNNNNNNTTYG	2 cut(s)	906, 938
Asp700I	GAANNNNTTC	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	4 cut(s)	49, 398, 407, 754
AsuHPI	GGTGA	4 cut(s)	44, 380, 467, 626
AvaII	GGWCC	2 cut(s)	49, 398
AxyI	CCTNAGG	1 cut(s)	696
BanII	GRGCYC	3 cut(s)	139, 340, 869
BauI	CACGAG	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	1074
Bbv12I	GWGCWC	3 cut(s)	340, 358, 738
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	9 cut(s)	70, 76, 80, 88, 104, 153, 656, 1038, 1064
BccI	CCATC	5 cut(s)	359, 365, 452, 644, 1066
BceAI	ACGGC	4 cut(s)	252, 471, 972, 978
BcgI	CGANNNNNNTGC	2 cut(s)	569, 603
BciT130I	CCWGG	3 cut(s)	345, 975, 1074
BcoDI	GTCTC	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	98
BfrI	CTTAAG	1 cut(s)	767
BglI	GCCNNNNNGGC	1 cut(s)	761
BlpI	GCTNAGC	2 cut(s)	72, 162
Bme1390I	CCNGG	3 cut(s)	345, 975, 1074
Bme18I	GGWCC	2 cut(s)	49, 398
BmgBI	CACGTC	2 cut(s)	251, 275
BmgT120I	GGNCC	4 cut(s)	49, 398, 407, 754
BmiI	GGNNCC	2 cut(s)	51, 1006
BmrFI	CCNGG	3 cut(s)	345, 975, 1074
BmrI	ACTGGG	1 cut(s)	553
BmsI	GCATC	5 cut(s)	31, 196, 631, 784, 936
BmuI	ACTGGG	1 cut(s)	553
BpiI	GAAGAC	1 cut(s)	1074
Bpu10I	CCTNAGC	3 cut(s)	117, 138, 192
Bpu1102I	GCTNAGC	2 cut(s)	72, 162
BsaI	GGTCTC	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	5 cut(s)	350, 416, 953, 1090, 1091
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	3 cut(s)	90, 502, 548
Bse21I	CCTNAGG	1 cut(s)	696
BseBI	CCWGG	3 cut(s)	345, 975, 1074
BseGI	GGATG	3 cut(s)	211, 302, 1058
BseLI	CCNNNNNNNGG	5 cut(s)	350, 416, 953, 1090, 1091
BseMII	CTCAG	7 cut(s)	86, 131, 152, 206, 561, 687, 885
BseNI	ACTGG	3 cut(s)	90, 502, 548
BseRI	GAGGAG	3 cut(s)	105, 330, 1029
BseXI	GCAGC	9 cut(s)	70, 76, 80, 88, 104, 153, 656, 1038, 1064
Bsh1236I	CGCG	3 cut(s)	429, 504, 522
BshFI	GGCC	5 cut(s)	409, 755, 839, 987, 993
BsiHKAI	GWGCWC	3 cut(s)	340, 358, 738
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	2 cut(s)	95, 508
BslI	CCNNNNNNNGG	5 cut(s)	350, 416, 953, 1090, 1091
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	95, 508
BsnI	GGCC	5 cut(s)	409, 755, 839, 987, 993
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	5 cut(s)	139, 340, 358, 738, 869
Bsp143I	GATC	2 cut(s)	63, 123
Bsp1720I	GCTNAGC	2 cut(s)	72, 162
BspACI	CCGC	7 cut(s)	427, 429, 469, 504, 948, 1049, 1095
BspANI	GGCC	5 cut(s)	409, 755, 839, 987, 993
BspCNI	CTCAG	7 cut(s)	85, 130, 151, 205, 562, 688, 886
BspFNI	CGCG	3 cut(s)	429, 504, 522
BspLI	GGNNCC	2 cut(s)	51, 1006
BspMAI	CTGCAG	1 cut(s)	94
BspTI	CTTAAG	1 cut(s)	767
BspTNI	GGTCTC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	3 cut(s)	90, 502, 548
BssAI	RCCGGY	1 cut(s)	157
BssMI	GATC	2 cut(s)	63, 123
BssSI	CACGAG	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	798, 1089
Bst2BI	CACGAG	1 cut(s)	402
Bst2UI	CCWGG	3 cut(s)	345, 975, 1074
Bst4CI	ACNGT	3 cut(s)	296, 332, 416
Bst6I	CTCTTC	4 cut(s)	627, 714, 735, 740
BstAFI	CTTAAG	1 cut(s)	767
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	3 cut(s)	159, 180, 948
BstDEI	CTNAG	8 cut(s)	72, 117, 138, 162, 192, 570, 696, 894
BstDSI	CCRYGG	5 cut(s)	268, 415, 427, 988, 994
BstENI	CCTNNNNNAGG	1 cut(s)	348
BstF5I	GGATG	3 cut(s)	211, 302, 1058
BstFNI	CGCG	3 cut(s)	429, 504, 522
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	2 cut(s)	66, 126
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	63, 123
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 175, 188, 761
BstNI	CCWGG	3 cut(s)	345, 975, 1074
BstSCI	CCNGG	3 cut(s)	343, 973, 1072
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	3 cut(s)	429, 504, 522
BstV1I	GCAGC	9 cut(s)	70, 76, 80, 88, 104, 153, 656, 1038, 1064
BstV2I	GAAGAC	1 cut(s)	1074
Bsu36I	CCTNAGG	1 cut(s)	696
BsuRI	GGCC	5 cut(s)	409, 755, 839, 987, 993
BtgI	CCRYGG	5 cut(s)	268, 415, 427, 988, 994
BtrI	CACGTC	2 cut(s)	251, 275
BtsCI	GGATG	3 cut(s)	211, 302, 1058
BtsI	GCAGTG	1 cut(s)	1051
BtsIMutI	CAGTG	2 cut(s)	337, 1051
Cac8I	GCNNGC	3 cut(s)	159, 180, 948
CaiI	CAGNNNCTG	1 cut(s)	85
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	4 cut(s)	49, 398, 407, 754
Cfr42I	CCGCGG	1 cut(s)	430
CseI	GACGC	1 cut(s)	510
CspCI	CAANNNNNGTGG	2 cut(s)	958, 993
CviAII	CATG	2 cut(s)	10, 386
DdeI	CTNAG	8 cut(s)	72, 117, 138, 162, 192, 570, 696, 894
DpnI	GATC	2 cut(s)	65, 125
DpnII	GATC	2 cut(s)	63, 123
EaeI	YGGCCR	2 cut(s)	985, 991
Eam1104I	CTCTTC	4 cut(s)	627, 714, 735, 740
EarI	CTCTTC	4 cut(s)	627, 714, 735, 740
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	2 cut(s)	798, 1089
Eco24I	GRGCYC	3 cut(s)	139, 340, 869
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	49, 398
Eco53kI	GAGCTC	1 cut(s)	338
Eco57I	CTGAAG	3 cut(s)	702, 743, 972
Eco81I	CCTNAGG	1 cut(s)	696
EcoICRI	GAGCTC	1 cut(s)	338
EcoNI	CCTNNNNNAGG	1 cut(s)	348
EcoO109I	RGGNCCY	2 cut(s)	49, 754
EcoRII	CCWGG	3 cut(s)	343, 973, 1072
EcoT14I	CCWWGG	2 cut(s)	798, 1089
EcoT38I	GRGCYC	3 cut(s)	139, 340, 869
ErhI	CCWWGG	2 cut(s)	798, 1089
FaeI	CATG	2 cut(s)	13, 389
FaiI	YATR	7 cut(s)	11, 258, 264, 312, 387, 393, 1041
FalI	AAGNNNNNCTT	2 cut(s)	342, 374
FaqI	GGGAC	2 cut(s)	95, 508
FatI	CATG	2 cut(s)	9, 385
FauI	CCCGC	1 cut(s)	955
FokI	GGATG	3 cut(s)	218, 289, 1045
FriOI	GRGCYC	3 cut(s)	139, 340, 869
GlaI	GCGC	1 cut(s)	96
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	5 cut(s)	409, 755, 839, 987, 993
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	1 cut(s)	510
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	13, 389
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	3 cut(s)	299, 809, 890
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	4 cut(s)	44, 380, 467, 626
Hpy166II	GTNNAC	3 cut(s)	248, 272, 398
Hpy188I	TCNGA	4 cut(s)	571, 729, 871, 895
Hpy188III	TCNNGA	2 cut(s)	146, 359
Hpy8I	GTNNAC	3 cut(s)	248, 272, 398
Hpy99I	CGWCG	1 cut(s)	58
HpyCH4III	ACNGT	3 cut(s)	296, 332, 416
HpyCH4IV	ACGT	2 cut(s)	250, 274
HpyCH4V	TGCA	4 cut(s)	92, 209, 446, 644
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 175, 188, 761
HpyF3I	CTNAG	8 cut(s)	72, 117, 138, 162, 192, 570, 696, 894
HpySE526I	ACGT	2 cut(s)	250, 274
Hsp92II	CATG	2 cut(s)	13, 389
HspAI	GCGC	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
KspI	CCGCGG	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	63, 123
LmnI	GCTCC	2 cut(s)	335, 343
Lsp1109I	GCAGC	9 cut(s)	70, 76, 80, 88, 104, 153, 656, 1038, 1064
LweI	GCATC	5 cut(s)	31, 196, 631, 784, 936
MaeII	ACGT	2 cut(s)	250, 274
MaeIII	GTNAC	4 cut(s)	32, 287, 549, 595
MalI	GATC	2 cut(s)	65, 125
MboI	GATC	2 cut(s)	63, 123
MhlI	GDGCHC	5 cut(s)	139, 340, 358, 738, 869
MluCI	AATT	4 cut(s)	307, 803, 860, 1030
MmeI	TCCRAC	1 cut(s)	841
MroNI	GCCGGC	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	320
MseI	TTAA	3 cut(s)	768, 858, 941
MslI	CAYNNNNRTG	3 cut(s)	390, 612, 1044
MspA1I	CMGCKG	3 cut(s)	61, 429, 950
MspCI	CTTAAG	1 cut(s)	767
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	3 cut(s)	345, 975, 1074
MvaI	CCWGG	3 cut(s)	345, 975, 1074
MvnI	CGCG	3 cut(s)	429, 504, 522
MwoI	GCNNNNNNNGC	4 cut(s)	163, 175, 188, 761
NaeI	GCCGGC	1 cut(s)	159
NdeII	GATC	2 cut(s)	63, 123
NgoMIV	GCCGGC	1 cut(s)	157
NlaIII	CATG	2 cut(s)	13, 389
NlaIV	GGNNCC	2 cut(s)	51, 1006
NmeAIII	GCCGAG	1 cut(s)	70
NmuCI	GTSAC	2 cut(s)	32, 549
PasI	CCCWGGG	1 cut(s)	1073
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	3 cut(s)	299, 809, 890
PpuMI	RGGWCCY	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	49
Psp6I	CCWGG	3 cut(s)	343, 973, 1072
PspGI	CCWGG	3 cut(s)	343, 973, 1072
PspN4I	GGNNCC	2 cut(s)	51, 1006
PspPI	GGNCC	4 cut(s)	49, 398, 407, 754
PspPPI	RGGWCCY	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	61
RseI	CAYNNNNRTG	3 cut(s)	390, 612, 1044
SacI	GAGCTC	1 cut(s)	340
SacII	CCGCGG	1 cut(s)	430
SaqAI	TTAA	3 cut(s)	768, 858, 941
Sau3AI	GATC	2 cut(s)	63, 123
Sau96I	GGNCC	4 cut(s)	49, 398, 407, 754
ScrFI	CCNGG	3 cut(s)	345, 975, 1074
SduI	GDGCHC	5 cut(s)	139, 340, 358, 738, 869
SfaNI	GCATC	5 cut(s)	31, 196, 631, 784, 936
SfcI	CTRYAG	1 cut(s)	90
Sfr303I	CCGCGG	1 cut(s)	430
SgrBI	CCGCGG	1 cut(s)	430
SinI	GGWCC	2 cut(s)	49, 398
SmiMI	CAYNNNNRTG	3 cut(s)	390, 612, 1044
SmlI	CTYRAG	1 cut(s)	767
SmoI	CTYRAG	1 cut(s)	767
Sse9I	AATT	4 cut(s)	307, 803, 860, 1030
SsiI	CCGC	7 cut(s)	427, 429, 469, 504, 948, 1049, 1095
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	3 cut(s)	343, 973, 1072
StyI	CCWWGG	2 cut(s)	798, 1089
TaaI	ACNGT	3 cut(s)	296, 332, 416
TaiI	ACGT	2 cut(s)	253, 277
TaqI	TCGA	1 cut(s)	738
TaqII	GACCGA	1 cut(s)	593
TasI	AATT	4 cut(s)	307, 803, 860, 1030
TauI	GCSGC	4 cut(s)	429, 471, 1052, 1098
TfiI	GAWTC	3 cut(s)	299, 809, 890
Tru1I	TTAA	3 cut(s)	768, 858, 941
Tru9I	TTAA	3 cut(s)	768, 858, 941
TscAI	CASTG	2 cut(s)	337, 1051
TseFI	GTSAC	2 cut(s)	32, 549
TseI	GCWGC	9 cut(s)	58, 68, 76, 89, 92, 166, 644, 1026, 1052
Tsp45I	GTSAC	2 cut(s)	32, 549
TspDTI	ATGAA	6 cut(s)	26, 231, 576, 690, 844, 861
TspGWI	ACGGA	1 cut(s)	791
TspRI	CASTG	2 cut(s)	337, 1051
Vha464I	CTTAAG	1 cut(s)	767
VpaK11BI	GGWCC	2 cut(s)	49, 398
XagI	CCTNNNNNAGG	1 cut(s)	348
XapI	RAATTY	1 cut(s)	803
XmnI	GAANNNNTTC	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.