Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0001809

Physical Location & Seq

Genomic Coordinates Forward (+)

3985606 .. 3986185

Gene Structure 580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g04410.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGCAGCTGCTTTCAAACAAGAAGGAAAATGATGAAATATTTATCAAGCTGGGTTCGGAGAAGGATAAGCGCAAAGAAGCTGCTGAGAAAGAAGAGAGAGCCAAGAAGTCTGTTAGCATTAATGAGTTTCTGAAGCCTGCTGAAGGCGAGAGGTACTATGGTGGTCGTGGTCGAGGCCGTGGCCGTGGGCCAAGAGGTGGATACAGTGGAGGACCTGGAGGTTACTCAAGCAATGCGGCAGCACCCTCCATTGGTGATCCCGGCCAGTTCCCATCCCTCGGCGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HABP4_PAI-RBP1 Stm1_N

Protein Analysis

97

Amino Acids

10.26

Weight (kDa)

9.69

Isoelectric Point (pI)

26.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16830 AT4G16830 AT4G16830
fragaria_vesca	FvH4_5g20020 FvH4_5g20020 FvH4_5g20020 FvH4_7g10280
malus_domestica	MD02G1213500.v1.1 MD04G1050100.v1.1 MD06G1049800.v1.1 MD07G1109500.v1.1
prunus_persica	Prupe.2G132500_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1
pyrus_communis	pycom04g04410 pycom06g04220 pycom07g09400 pycom12646g00030
rosa_chinensis	RchiOBHm_Chr1g0348031 RchiOBHm_Chr7g0204831 RchiOBHm_Chr7g0204851
rosa_laevigata	RLG00000003428 RLG00000028697
rosa_multiflora	Rmu_sc0002180.1_g000016 Rmu_sc0002180.1_g000023 Rmu_ssc0000263.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252730 Rroxscaffold_4G00307320
rosa_rugosa	Rorug01G0190700 Rorug01G0190800 Rorug07G0086000 Rorug07G0086000 Rorug07G0086100
rosa_samantha	Rh1AG209300 Rh1BG174300 Rh1CG193700 Rh1DG204100 Rh7AG216500 Rh7AG216700 Rh7BG213600 Rh7CG230000 Rh7DG224100 Rh7DG224300
rosa_wichuraiana	Rw1G017440 Rw7G018760 Rw7G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	197
AciI	CCGC	2 cut(s)	236, 282
AclWI	GGATC	1 cut(s)	251
AcoI	YGGCCR	2 cut(s)	181, 262
AcuI	CTGAAG	2 cut(s)	152, 162
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	5 cut(s)	143, 197, 251, 278, 282
AgsI	TTSAA	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	214
AluBI	AGCT	3 cut(s)	7, 49, 80
AluI	AGCT	3 cut(s)	7, 49, 80
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	4 cut(s)	175, 181, 188, 262
ApeKI	GCWGC	4 cut(s)	4, 7, 80, 239
AseI	ATTAAT	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	72
AspS9I	GGNCC	2 cut(s)	188, 212
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	212
BaeI	ACNNNNGTAYC	2 cut(s)	145, 178
BbvI	GCAGC	3 cut(s)	16, 67, 251
BccI	CCATC	1 cut(s)	280
BceAI	ACGGC	2 cut(s)	162, 168
BciT130I	CCWGG	1 cut(s)	216
BciVI	GTATCC	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	194
BisI	GCNGC	5 cut(s)	5, 8, 81, 237, 240
BlsI	GCNGC	5 cut(s)	6, 9, 82, 238, 241
Bme1390I	CCNGG	2 cut(s)	216, 261
Bme18I	GGWCC	1 cut(s)	212
BmgT120I	GGNCC	2 cut(s)	188, 212
BmrFI	CCNGG	2 cut(s)	216, 261
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	211
BpuMI	CCSGG	1 cut(s)	261
BsaJI	CCNNGG	3 cut(s)	178, 184, 277
Bsc4I	CCNNNNNNNGG	5 cut(s)	143, 197, 251, 278, 282
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	216
BseDI	CCNNGG	3 cut(s)	178, 184, 277
BseGI	GGATG	1 cut(s)	272
BseLI	CCNNNNNNNGG	5 cut(s)	143, 197, 251, 278, 282
BseMI	GCAATG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	3 cut(s)	16, 67, 251
BseYI	CCCAGC	1 cut(s)	49
BshFI	GGCC	4 cut(s)	177, 183, 190, 264
BsiSI	CCGG	1 cut(s)	261
BslI	CCNNNNNNNGG	5 cut(s)	143, 197, 251, 278, 282
BsnI	GGCC	4 cut(s)	177, 183, 190, 264
Bsp143I	GATC	1 cut(s)	256
BspACI	CCGC	2 cut(s)	236, 282
BspANI	GGCC	4 cut(s)	177, 183, 190, 264
BspCNI	CTCAG	1 cut(s)	76
BspPI	GGATC	1 cut(s)	251
BsrDI	GCAATG	1 cut(s)	238
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	178, 184, 277
BssMI	GATC	1 cut(s)	256
Bst2UI	CCWGG	1 cut(s)	216
Bst4CI	ACNGT	1 cut(s)	206
Bst6I	CTCTTC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	2 cut(s)	178, 184
BstENI	CCTNNNNNAGG	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	272
BstHHI	GCGC	1 cut(s)	72
BstKTI	GATC	1 cut(s)	259
BstMBI	GATC	1 cut(s)	256
BstNI	CCWGG	1 cut(s)	216
BstSCI	CCNGG	2 cut(s)	214, 259
BstV1I	GCAGC	3 cut(s)	16, 67, 251
BsuI	GTATCC	1 cut(s)	194
BsuRI	GGCC	4 cut(s)	177, 183, 190, 264
BtgI	CCRYGG	2 cut(s)	178, 184
BtsCI	GGATG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	138
CfoI	GCGC	1 cut(s)	72
Cfr13I	GGNCC	2 cut(s)	188, 212
Csp6I	GTAC	1 cut(s)	154
CviJI	RGCY	9 cut(s)	7, 49, 80, 101, 136, 177, 183, 190, 264
CviKI_1	RGCY	9 cut(s)	7, 49, 80, 101, 136, 177, 183, 190, 264
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	258
DpnII	GATC	1 cut(s)	256
EaeI	YGGCCR	2 cut(s)	181, 262
Eam1104I	CTCTTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	212
Eco57I	CTGAAG	2 cut(s)	152, 162
EcoNI	CCTNNNNNAGG	1 cut(s)	141
EcoO109I	RGGNCCY	1 cut(s)	212
EcoRII	CCWGG	1 cut(s)	214
FaiI	YATR	1 cut(s)	159
FauI	CCCGC	1 cut(s)	275
Fnu4HI	GCNGC	5 cut(s)	5, 8, 81, 237, 240
FokI	GGATG	1 cut(s)	259
Fsp4HI	GCNGC	5 cut(s)	5, 8, 81, 237, 240
GlaI	GCGC	1 cut(s)	71
GluI	GCNGC	5 cut(s)	5, 8, 81, 237, 240
GsaI	CCCAGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	4 cut(s)	177, 183, 190, 264
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	1 cut(s)	72
Hin6I	GCGC	1 cut(s)	70
HinP1I	GCGC	1 cut(s)	70
HpaII	CCGG	1 cut(s)	261
HphI	GGTGA	1 cut(s)	266
Hpy188I	TCNGA	2 cut(s)	58, 132
HpyAV	CCTTC	3 cut(s)	16, 55, 137
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	84
HspAI	GCGC	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	256
LpnPI	CCDG	6 cut(s)	35, 150, 201, 228, 274, 278
Lsp1109I	GCAGC	3 cut(s)	16, 67, 251
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	1 cut(s)	258
MboI	GATC	1 cut(s)	256
MboII	GAAGA	1 cut(s)	104
MnlI	CCTC	7 cut(s)	144, 167, 188, 203, 212, 256, 287
MseI	TTAA	1 cut(s)	120
MspA1I	CMGCKG	1 cut(s)	7
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	216, 261
MvaI	CCWGG	1 cut(s)	216
NciI	CCSGG	1 cut(s)	261
NdeII	GATC	1 cut(s)	256
NmeAIII	GCCGAG	1 cut(s)	258
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	5 cut(s)	6, 9, 82, 238, 241
PpuMI	RGGWCCY	1 cut(s)	212
PshBI	ATTAAT	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	214
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	214
PspPI	GGNCC	2 cut(s)	188, 212
PspPPI	RGGWCCY	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	7
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	1 cut(s)	120
SatI	GCNGC	5 cut(s)	5, 8, 81, 237, 240
Sau3AI	GATC	1 cut(s)	256
Sau96I	GGNCC	2 cut(s)	188, 212
ScrFI	CCNGG	2 cut(s)	216, 261
SetI	ASST	7 cut(s)	9, 51, 82, 155, 199, 217, 223
SinI	GGWCC	1 cut(s)	212
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
SsiI	CCGC	2 cut(s)	236, 282
SspI	AATATT	1 cut(s)	39
StyD4I	CCNGG	2 cut(s)	214, 259
TaaI	ACNGT	1 cut(s)	206
TaqI	TCGA	1 cut(s)	172
TauI	GCSGC	1 cut(s)	239
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	4 cut(s)	4, 7, 80, 239
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	212
VspI	ATTAAT	1 cut(s)	120
XagI	CCTNNNNNAGG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.