Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0001809

Physical Location & Seq

Genomic Coordinates Forward (+)

20155662 .. 20158916

Gene Structure 3255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG216500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCAACCGCGAACCCTTTCGATCTGTTGGGCGACGACGACAACGATGACGTAAGTCAACTCGCTGCTAAGGTGGTGGCTCCTGCCGCCGCCGCCGCCGCCCAGCCCAAGAAGGGTGCTCCGGCCCAAGCTGTTCAGCCTGGGAAGTCCGCCAAGCTCCCCTCCAAGCCTCTCCCTCCTGCTCAAGCTGTGAGGGAAGGTGGCCGTGGAGGTGGCCGTGGCGGCGGCCGAGGGTTTGGTGGTGAGGGGCGTGGATATGGTGAGGGGCGTGGGTATGGTGGCCGTGGACGTGGTGGAGGTGGTGGTGGATATGGTGGATATAATCGGGATCGTGGCAGCGATGAGAACACTAATGGTTTCTCTGGTGGAGGGTACAGCAAACCCGAAGAGGGGGATAGGGATGTTTCTGAAAGGCGTGGTGGCTACGGGGGACCTCGTGGTTCCTTCCGTGGTGGACGCCGTGGTGGCTTTAGCAATGGAGAGGATGCAGAAGGGGAGCGTCCTCGGAGGACATTTGACCGTCACAGTGGCACTGGACGTGGAGCTAACTTTAAACGTGATGGAGCTGGTCGTGGGAATTGGGGAACTCCCACTGATGAAATTGCTTCTGAGATAGAGGCTGGCACTGAAGTTGAGAAGGATGTTGGTGCTGAGAAGCAGTTGGGAGAGAATGAGGCTGCTGATGCCAGCAAGGAGAATCCTGTGGAAGAGCCAGAAGAGAAGGAGCCTGAGGAAAAGGAGATGACTCTGGAAGAGTATGAGAAGGTTCTTGAAGAGAAGAGGAAGGCTCTGGCTGCACTTAAGACTGAGGAGAGAAAGGTTGACTTGGACAAAGAGTTGAAGTCTATGCAGCAGCTCTCAAGCAAGAAGACAAATGATGAAATATTTATCAAGCTGGGTTCTGAAAAGGATAAACGCAAGGAAGCTGCTGAGAAGGAGGAGAGAGCCAAGAAGTCTGTTAGCATAAACGAATTCCTGAAGCCTGCTGAAGGGGAGAACCAGAGGTTCTATGGTGGTCGTAATCGGGGACGTGGAGGCCGTGGTTCAAGAGGCGGAAACAGTGGAGGACATGGAGGTTACTCGAGCAATGTGCAAGCACCGCCCATTGCAGATCCTGGGCACTTTCCATCCCTTGGTGGAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HABP4_PAI-RBP1 Stm1_N

Protein Analysis

381

Amino Acids

40.13

Weight (kDa)

6.92

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stm1_N	PF09598	1 - 76	8.5e-21	Stm1
HABP4_PAI-RBP1	PF04774	168 - 274	4.8e-30	Hyaluronan / mRNA binding family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16830 AT4G16830 AT4G16830
fragaria_vesca	FvH4_5g20020 FvH4_5g20020 FvH4_5g20020 FvH4_7g10280
malus_domestica	MD02G1213500.v1.1 MD04G1050100.v1.1 MD06G1049800.v1.1 MD07G1109500.v1.1
prunus_persica	Prupe.2G132500_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1
pyrus_communis	pycom04g04410 pycom06g04220 pycom07g09400 pycom12646g00030
rosa_chinensis	RchiOBHm_Chr1g0348031 RchiOBHm_Chr7g0204831 RchiOBHm_Chr7g0204851
rosa_laevigata	RLG00000003428 RLG00000028697
rosa_multiflora	Rmu_sc0002180.1_g000016 Rmu_sc0002180.1_g000023 Rmu_ssc0000263.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252730 Rroxscaffold_4G00307320
rosa_rugosa	Rorug01G0190700 Rorug01G0190800 Rorug07G0086000 Rorug07G0086000 Rorug07G0086100
rosa_samantha	Rh1AG209300 Rh1BG174300 Rh1CG193700 Rh1DG204100 Rh7AG216500 Rh7AG216700 Rh7BG213600 Rh7CG230000 Rh7DG224100 Rh7DG224300
rosa_wichuraiana	Rw1G017440 Rw7G018760 Rw7G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1133
AccII	CGCG	1 cut(s)	11
AclWI	GGATC	2 cut(s)	336, 1106
AcoI	YGGCCR	4 cut(s)	202, 214, 226, 280
AcsI	RAATTY	1 cut(s)	971
AcuI	CTGAAG	3 cut(s)	648, 998, 1008
AcyI	GRCGYC	1 cut(s)	457
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	5 cut(s)	113, 389, 390, 989, 1133
AflII	CTTAAG	1 cut(s)	800
AgsI	TTSAA	3 cut(s)	773, 841, 1047
AjiI	CACGTC	3 cut(s)	290, 539, 1031
AjnI	CCWGG	2 cut(s)	139, 1114
AluBI	AGCT	8 cut(s)	131, 157, 188, 545, 566, 856, 895, 926
AluI	AGCT	8 cut(s)	131, 157, 188, 545, 566, 856, 895, 926
Alw21I	GWGCWC	1 cut(s)	121
AlwI	GGATC	2 cut(s)	336, 1106
AlwNI	CAGNNNCTG	1 cut(s)	1115
Ama87I	CYCGRG	1 cut(s)	1081
AoxI	GGCC	6 cut(s)	123, 202, 214, 226, 280, 1036
ApeKI	GCWGC	7 cut(s)	65, 336, 677, 794, 850, 853, 926
ApoI	RAATTY	1 cut(s)	971
Asp700I	GAANNNNTTC	1 cut(s)	17
AspS9I	GGNCC	2 cut(s)	124, 431
AsuHPI	GGTGA	2 cut(s)	254, 272
AvaI	CYCGRG	1 cut(s)	1081
AvaII	GGWCC	1 cut(s)	431
AxyI	CCTNAGG	1 cut(s)	729
BaeGI	GKGCMC	1 cut(s)	1122
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	875
Bbv12I	GWGCWC	1 cut(s)	121
BbvI	GCAGC	7 cut(s)	52, 348, 664, 781, 862, 865, 913
BccI	CCATC	2 cut(s)	554, 1135
BceAI	ACGGC	5 cut(s)	189, 201, 267, 444, 1023
BcgI	CGANNNNNNTGC	2 cut(s)	1072, 1106
BciT130I	CCWGG	2 cut(s)	141, 1116
BfrI	CTTAAG	1 cut(s)	800
BglI	GCCNNNNNGGC	2 cut(s)	222, 465
Bme1390I	CCNGG	2 cut(s)	141, 1116
Bme18I	GGWCC	1 cut(s)	431
BmeT110I	CYCGRG	1 cut(s)	1081
BmgBI	CACGTC	3 cut(s)	290, 539, 1031
BmgT120I	GGNCC	2 cut(s)	124, 431
BmiI	GGNNCC	4 cut(s)	81, 432, 442, 726
BmrFI	CCNGG	2 cut(s)	141, 1116
BmsI	GCATC	2 cut(s)	475, 673
BoxI	GACNNNNGTC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	875
BplI	GAGNNNNNCTC	2 cut(s)	772, 804
Bpu10I	CCTNAGC	1 cut(s)	69
BpuEI	CTTGAG	2 cut(s)	168, 844
BsaHI	GRCGYC	1 cut(s)	457
Bsc4I	CCNNNNNNNGG	5 cut(s)	113, 389, 390, 989, 1133
Bse1I	ACTGG	1 cut(s)	538
Bse21I	CCTNAGG	1 cut(s)	729
Bse3DI	GCAATG	3 cut(s)	481, 1093, 1104
BseBI	CCWGG	2 cut(s)	141, 1116
BseGI	GGATG	4 cut(s)	406, 490, 646, 1127
BseLI	CCNNNNNNNGG	5 cut(s)	113, 389, 390, 989, 1133
BseMI	GCAATG	3 cut(s)	481, 1093, 1104
BseMII	CTCAG	5 cut(s)	600, 642, 720, 798, 921
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	2 cut(s)	824, 953
BseSI	GKGCMC	1 cut(s)	1122
BseX3I	CGGCCG	1 cut(s)	226
BseXI	GCAGC	7 cut(s)	52, 348, 664, 781, 862, 865, 913
BseYI	CCCAGC	2 cut(s)	102, 895
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	6 cut(s)	125, 204, 216, 228, 282, 1038
BsiEI	CGRYCG	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	121
BsiHKCI	CYCGRG	1 cut(s)	1081
BsiSI	CCGG	1 cut(s)	122
BslFI	GGGAC	2 cut(s)	444, 1041
BslI	CCNNNNNNNGG	5 cut(s)	113, 389, 390, 989, 1133
BsmFI	GGGAC	2 cut(s)	444, 1041
BsnI	GGCC	6 cut(s)	125, 204, 216, 228, 282, 1038
BsoBI	CYCGRG	1 cut(s)	1081
Bsp1286I	GDGCHC	2 cut(s)	121, 1122
Bsp143I	GATC	3 cut(s)	22, 328, 1111
BspANI	GGCC	6 cut(s)	125, 204, 216, 228, 282, 1038
BspCNI	CTCAG	5 cut(s)	601, 643, 721, 799, 922
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	4 cut(s)	81, 432, 442, 726
BspPI	GGATC	2 cut(s)	336, 1106
BspQI	GCTCTTC	1 cut(s)	702
BspTI	CTTAAG	1 cut(s)	800
BsrDI	GCAATG	3 cut(s)	481, 1093, 1104
BsrI	ACTGG	1 cut(s)	538
BssMI	GATC	3 cut(s)	22, 328, 1111
BssNI	GRCGYC	1 cut(s)	457
BssSI	CACGAG	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	1132
Bst2BI	CACGAG	1 cut(s)	435
Bst2UI	CCWGG	2 cut(s)	141, 1116
Bst4CI	ACNGT	3 cut(s)	521, 527, 1061
Bst6I	CTCTTC	6 cut(s)	381, 702, 711, 747, 768, 773
BstACI	GRCGYC	1 cut(s)	457
BstAFI	CTTAAG	1 cut(s)	800
BstC8I	GCNNGC	4 cut(s)	622, 688, 984, 1095
BstDEI	CTNAG	6 cut(s)	69, 609, 651, 729, 807, 930
BstDSI	CCRYGG	6 cut(s)	205, 217, 283, 448, 460, 1039
BstENI	CCTNNNNNAGG	1 cut(s)	987
BstF5I	GGATG	4 cut(s)	406, 490, 646, 1127
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	3 cut(s)	25, 331, 1114
BstMBI	GATC	3 cut(s)	22, 328, 1111
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	9 cut(s)	86, 92, 95, 98, 222, 465, 683, 794, 1099
BstNI	CCWGG	2 cut(s)	141, 1116
BstPAI	GACNNNNGTC	1 cut(s)	54
BstSCI	CCNGG	2 cut(s)	139, 1114
BstSLI	GKGCMC	1 cut(s)	1122
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	7 cut(s)	52, 348, 664, 781, 862, 865, 913
BstV2I	GAAGAC	1 cut(s)	875
BstX2I	RGATCY	1 cut(s)	1111
BstYI	RGATCY	1 cut(s)	1111
BstZI	CGGCCG	1 cut(s)	226
Bsu36I	CCTNAGG	1 cut(s)	729
BsuRI	GGCC	6 cut(s)	125, 204, 216, 228, 282, 1038
BtgI	CCRYGG	6 cut(s)	205, 217, 283, 448, 460, 1039
BtgZI	GCGATG	1 cut(s)	354
BtrI	CACGTC	3 cut(s)	290, 539, 1031
BtsCI	GGATG	4 cut(s)	406, 490, 646, 1127
BtsIMutI	CAGTG	5 cut(s)	531, 532, 591, 624, 1066
Cac8I	GCNNGC	4 cut(s)	622, 688, 984, 1095
CaiI	CAGNNNCTG	1 cut(s)	1115
Cfr13I	GGNCC	2 cut(s)	124, 431
CseI	GACGC	2 cut(s)	465, 488
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	1 cut(s)	1070
CviQI	GTAC	1 cut(s)	373
DdeI	CTNAG	6 cut(s)	69, 609, 651, 729, 807, 930
DpnI	GATC	3 cut(s)	24, 330, 1113
DpnII	GATC	3 cut(s)	22, 328, 1111
DraI	TTTAAA	1 cut(s)	553
EaeI	YGGCCR	4 cut(s)	202, 214, 226, 280
EagI	CGGCCG	1 cut(s)	226
Eam1104I	CTCTTC	6 cut(s)	381, 702, 711, 747, 768, 773
EarI	CTCTTC	6 cut(s)	381, 702, 711, 747, 768, 773
EciI	GGCGGA	2 cut(s)	139, 1068
EclXI	CGGCCG	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	1132
Eco47I	GGWCC	1 cut(s)	431
Eco52I	CGGCCG	1 cut(s)	226
Eco57I	CTGAAG	3 cut(s)	648, 998, 1008
Eco81I	CCTNAGG	1 cut(s)	729
Eco88I	CYCGRG	1 cut(s)	1081
EcoNI	CCTNNNNNAGG	1 cut(s)	987
EcoO109I	RGGNCCY	1 cut(s)	431
EcoRI	GAATTC	1 cut(s)	971
EcoRII	CCWGG	2 cut(s)	139, 1114
EcoT14I	CCWWGG	1 cut(s)	1132
ErhI	CCWWGG	1 cut(s)	1132
FaeI	CATG	1 cut(s)	1073
FaiI	YATR	9 cut(s)	258, 276, 312, 321, 759, 848, 965, 1011, 1071
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	2 cut(s)	444, 1041
FatI	CATG	1 cut(s)	1069
FokI	GGATG	4 cut(s)	413, 497, 653, 1114
GsaI	CCCAGC	2 cut(s)	106, 899
HaeIII	GGCC	6 cut(s)	125, 204, 216, 228, 282, 1038
HapII	CCGG	1 cut(s)	122
HgaI	GACGC	2 cut(s)	465, 488
Hin1I	GRCGYC	1 cut(s)	457
Hin1II	CATG	1 cut(s)	1073
HincII	GTYRAC	2 cut(s)	59, 823
HindII	GTYRAC	2 cut(s)	59, 823
HinfI	GANTC	2 cut(s)	697, 745
HpaII	CCGG	1 cut(s)	122
HphI	GGTGA	2 cut(s)	254, 272
Hpy166II	GTNNAC	4 cut(s)	59, 287, 455, 823
Hpy188I	TCNGA	4 cut(s)	409, 507, 610, 904
Hpy188III	TCNNGA	5 cut(s)	326, 749, 770, 976, 1047
Hpy8I	GTNNAC	4 cut(s)	59, 287, 455, 823
Hpy99I	CGWCG	2 cut(s)	38, 41
HpyCH4III	ACNGT	3 cut(s)	521, 527, 1061
HpyCH4IV	ACGT	5 cut(s)	51, 289, 538, 556, 1030
HpyCH4V	TGCA	5 cut(s)	488, 797, 850, 1093, 1109
HpyF10VI	GCNNNNNNNGC	9 cut(s)	86, 92, 95, 98, 222, 465, 683, 794, 1099
HpyF3I	CTNAG	6 cut(s)	69, 609, 651, 729, 807, 930
HpySE526I	ACGT	5 cut(s)	51, 289, 538, 556, 1030
Hsp92I	GRCGYC	1 cut(s)	457
Hsp92II	CATG	1 cut(s)	1073
Kzo9I	GATC	3 cut(s)	22, 328, 1111
LguI	GCTCTTC	1 cut(s)	702
LmnI	GCTCC	7 cut(s)	85, 124, 162, 496, 542, 563, 724
Lsp1109I	GCAGC	7 cut(s)	52, 348, 664, 781, 862, 865, 913
LweI	GCATC	2 cut(s)	475, 673
MaeII	ACGT	5 cut(s)	51, 289, 538, 556, 1030
MaeIII	GTNAC	2 cut(s)	521, 1076
MalI	GATC	3 cut(s)	24, 330, 1113
MboI	GATC	3 cut(s)	22, 328, 1111
MboII	GAAGA	7 cut(s)	398, 719, 728, 764, 785, 790, 880
MflI	RGATCY	1 cut(s)	1111
MhlI	GDGCHC	2 cut(s)	121, 1122
MluCI	AATT	3 cut(s)	577, 600, 971
MlyI	GAGTC	1 cut(s)	739
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	2 cut(s)	552, 801
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	1 cut(s)	122
MspR9I	CCNGG	2 cut(s)	141, 1116
MvaI	CCWGG	2 cut(s)	141, 1116
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	9 cut(s)	86, 92, 95, 98, 222, 465, 683, 794, 1099
NdeII	GATC	3 cut(s)	22, 328, 1111
NlaIII	CATG	1 cut(s)	1073
NlaIV	GGNNCC	4 cut(s)	81, 432, 442, 726
NmeAIII	GCCGAG	1 cut(s)	254
NmuCI	GTSAC	1 cut(s)	521
PaeR7I	CTCGAG	1 cut(s)	1081
PciSI	GCTCTTC	1 cut(s)	702
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 1036
PdmI	GAANNNNTTC	1 cut(s)	17
PfeI	GAWTC	1 cut(s)	697
PflMI	CCANNNNNTGG	1 cut(s)	1133
PleI	GAGTC	1 cut(s)	739
PpsI	GAGTC	1 cut(s)	739
PpuMI	RGGWCCY	1 cut(s)	431
PshAI	GACNNNNGTC	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	431
Psp6I	CCWGG	2 cut(s)	139, 1114
PspFI	CCCAGC	2 cut(s)	102, 895
PspGI	CCWGG	2 cut(s)	139, 1114
PspN4I	GGNNCC	4 cut(s)	81, 432, 442, 726
PspPI	GGNCC	2 cut(s)	124, 431
PspPPI	RGGWCCY	1 cut(s)	431
PspXI	VCTCGAGB	1 cut(s)	1081
PstNI	CAGNNNCTG	1 cut(s)	1115
PsuI	RGATCY	1 cut(s)	1111
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
SapI	GCTCTTC	1 cut(s)	702
SaqAI	TTAA	2 cut(s)	552, 801
Sau3AI	GATC	3 cut(s)	22, 328, 1111
Sau96I	GGNCC	2 cut(s)	124, 431
SchI	GAGTC	1 cut(s)	739
ScrFI	CCNGG	2 cut(s)	141, 1116
SduI	GDGCHC	2 cut(s)	121, 1122
SfaNI	GCATC	2 cut(s)	475, 673
Sfr274I	CTCGAG	1 cut(s)	1081
SinI	GGWCC	1 cut(s)	431
SlaI	CTCGAG	1 cut(s)	1081
SmlI	CTYRAG	4 cut(s)	183, 800, 859, 1081
SmoI	CTYRAG	4 cut(s)	183, 800, 859, 1081
Sse9I	AATT	3 cut(s)	577, 600, 971
SspI	AATATT	1 cut(s)	885
StyD4I	CCNGG	2 cut(s)	139, 1114
StyI	CCWWGG	1 cut(s)	1132
TaaI	ACNGT	3 cut(s)	521, 527, 1061
TaiI	ACGT	5 cut(s)	54, 292, 541, 559, 1033
TaqI	TCGA	2 cut(s)	21, 1082
TasI	AATT	3 cut(s)	577, 600, 971
TauI	GCSGC	7 cut(s)	89, 92, 95, 98, 101, 225, 228
TfiI	GAWTC	1 cut(s)	697
Tru1I	TTAA	2 cut(s)	552, 801
Tru9I	TTAA	2 cut(s)	552, 801
TscAI	CASTG	5 cut(s)	532, 538, 598, 631, 1066
TseFI	GTSAC	1 cut(s)	521
TseI	GCWGC	7 cut(s)	65, 336, 677, 794, 850, 853, 926
Tsp45I	GTSAC	1 cut(s)	521
TspDTI	ATGAA	2 cut(s)	612, 894
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	5 cut(s)	532, 538, 598, 631, 1066
Van91I	CCANNNNNTGG	1 cut(s)	1133
Vha464I	CTTAAG	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	431
XagI	CCTNNNNNAGG	1 cut(s)	987
XapI	RAATTY	1 cut(s)	971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1007
XhoI	CTCGAG	1 cut(s)	1081
XmnI	GAANNNNTTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.