MD04G1050100.v1.1

Plasminogen activator inhibitor 1 RNA-binding

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Forward (+)
5916101 .. 5919099
2999 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1050100.v1.1.491

Sequence Viewer

Length: 1080 bp
ATGGCAACCGCGAACCCTTTCGATCTCTTGGGCGATGACGACAACGAGGACCCAAGTCAACTTCTCGCTGCTCAGCAGCAGAAGCTGCCGGCGGCGCAGCCCAAGAAGCCCCAGCAGGCCCAGCCTGCTCAGCCTGCTAAGCTTCCCTCCAAGCCACTCCCCCCTGCACAATCTGTGAGGGAGGGAAAGTATGAAGGTGGCCGTGGAGGTGGCCGTGGTGGACGTGGGTTCAGTCGTGGCCGTGGTGGAGGTGGTGGTGGATTTAATAGAGATCCAATCAGCAATGAGAACACCAATGGTTTTTCTGGTGGCTACAGACCATCTGAAGAGGGAGATGGGAAAGCTTCTGAAAGACGCGGGGGCTATGGTGCGCCTCGTGGTTCCTTCCGTGGTGGGCGTCGTGGTGGTTACAACAATGGTGAGGATGGTGAGGGAGAACGCCCTCGGAGGGTATTTGATCGTCGCAGTGGTACAGGACGTGGGAGTGATTTCAAACGTGAAGGGTCTGGTCGGGGGAATTGGGGAACTCCCTCTGATGACATTGCTCCGGAGACTGAGGAGCCTGGAACTGAAACTGAGAAGAATGTTGGTGCTGAGAAGCAGTCGGGAGAGAATGAGGCTGCTGATGCCAATAAGGAGGATACTGTTAATGAGACGGAAGAGAAGGAGCCTGAGGAGAAGGAAATGACTCTGGAAGAGTATCAGAAGGTGCTTGAAGAGAAGAGGAAGGCTCTGCTTGCATTGAAGACTGAGGAAAGAAAGGTTGATGTGGACAAAGACTTGAAGGCCATGCAGCTGCTTTCAAACAAGAAGGAAAATGATGAAATATTTATCAAGCTGGGTTCGGAGAAGGATAAGCGCAAAGAAGCTGCTGAGAAAGAAGAGAGAGCCAAGAAGTCTGTTAGCATTAATGAGTTTCTGAAGCCCGCTGAAGGCGAGAGGTACCATGGTGGTCGTGGTCGAGGCCGTGGCCGTGGGCCAAGAGGTGGATACAGTGGAGGACCTGGAGGTTACTCAAGCAATGCGGCAGCACCCTCCATTGGGGATCCCGGCCAGTTCCCATCCCTCGGCGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

360

Amino Acids

38.52

Weight (kDa)

6.76

Isoelectric Point (pI)

46.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Stm1_N PF09598 1 - 72 2.1e-24 Stm1
HABP4_PAI-RBP1 PF04774 148 - 255 1.6e-29 Hyaluronan / mRNA binding family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 942
AccB1I GGYRCC 1 cut(s) 942
AccB7I CCANNNNNTGG 1 cut(s) 986
AccII CGCG 2 cut(s) 11, 357
AccIII TCCGGA 1 cut(s) 547
AciI CCGC 6 cut(s) 9, 92, 357, 927, 1025, 1071
AclWI GGATC 3 cut(s) 266, 1040, 1053
AcoI YGGCCR 5 cut(s) 199, 211, 238, 970, 1051
AcuI CTGAAG 3 cut(s) 345, 941, 951
AcyI GRCGYC 1 cut(s) 397
AfaI GTAC 2 cut(s) 472, 944
AfiI CCNNNNNNNGG 7 cut(s) 448, 932, 986, 1040, 1041, 1067, 1071
AgsI TTSAA 5 cut(s) 493, 716, 745, 784, 804
AjiI CACGTC 2 cut(s) 224, 479
AjnI CCWGG 2 cut(s) 562, 1003
AluBI AGCT 6 cut(s) 85, 142, 344, 796, 838, 869
AluI AGCT 6 cut(s) 85, 142, 344, 796, 838, 869
Alw26I GTCTC 2 cut(s) 545, 647
AlwI GGATC 3 cut(s) 266, 1040, 1053
AlwNI CAGNNNCTG 1 cut(s) 85
Aor13HI TCCGGA 1 cut(s) 547
AoxI GGCC 9 cut(s) 117, 199, 211, 238, 786, 964, 970, 977, 1051
ApeKI GCWGC 9 cut(s) 68, 76, 85, 97, 620, 793, 796, 869, 1028
AseI ATTAAT 1 cut(s) 909
Asp700I GAANNNNTTC 1 cut(s) 17
Asp718I GGTACC 1 cut(s) 942
AspLEI GCGC 3 cut(s) 97, 373, 861
AspS9I GGNCC 4 cut(s) 49, 118, 977, 1001
AsuC2I CCSGG 1 cut(s) 1050
AsuHPI GGTGA 2 cut(s) 431, 440
AvaII GGWCC 2 cut(s) 49, 1001
AxyI CCTNAGG 1 cut(s) 672
BaeI ACNNNNGTAYC 2 cut(s) 934, 967
BamHI GGATCC 1 cut(s) 1045
BanI GGYRCC 1 cut(s) 942
BauI CACGAG 1 cut(s) 375
BbsI GAAGAC 1 cut(s) 752
BbvI GCAGC 9 cut(s) 55, 72, 88, 109, 607, 783, 805, 856, 1040
BccI CCATC 4 cut(s) 328, 329, 419, 1069
BceAI ACGGC 5 cut(s) 186, 198, 225, 951, 957
BciT130I CCWGG 2 cut(s) 564, 1005
BciVI GTATCC 2 cut(s) 634, 983
BcnI CCSGG 1 cut(s) 1050
BcoDI GTCTC 2 cut(s) 545, 647
BfmI CTRYAG 1 cut(s) 313
BfuI GTATCC 2 cut(s) 634, 983
BlpI GCTNAGC 3 cut(s) 72, 129, 138
Bme1390I CCNGG 3 cut(s) 564, 1005, 1050
Bme18I GGWCC 2 cut(s) 49, 1001
BmgBI CACGTC 2 cut(s) 224, 479
BmgT120I GGNCC 4 cut(s) 49, 118, 977, 1001
BmiI GGNNCC 6 cut(s) 51, 382, 561, 669, 944, 1047
BmrFI CCNGG 3 cut(s) 564, 1005, 1050
BmsI GCATC 1 cut(s) 616
BoxI GACNNNNGTC 1 cut(s) 54
BpiI GAAGAC 1 cut(s) 752
BplI GAGNNNNNCTC 2 cut(s) 715, 747
BpmI CTGGAG 1 cut(s) 1026
Bpu1102I GCTNAGC 3 cut(s) 72, 129, 138
BpuEI CTTGAG 1 cut(s) 1000
BpuMI CCSGG 1 cut(s) 1050
BsaHI GRCGYC 1 cut(s) 397
BsaJI CCNNGG 9 cut(s) 202, 214, 241, 388, 443, 946, 967, 973, 1066
BsaWI WCCGGW 1 cut(s) 547
BsaXI ACNNNNNCTCC 2 cut(s) 173, 203
Bsc4I CCNNNNNNNGG 7 cut(s) 448, 932, 986, 1040, 1041, 1067, 1071
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 1054
Bse21I CCTNAGG 1 cut(s) 672
Bse3DI GCAATG 3 cut(s) 289, 540, 1027
BseAI TCCGGA 1 cut(s) 547
BseBI CCWGG 2 cut(s) 564, 1005
BseDI CCNNGG 9 cut(s) 202, 214, 241, 388, 443, 946, 967, 973, 1066
BseGI GGATG 2 cut(s) 430, 1061
BseLI CCNNNNNNNGG 7 cut(s) 448, 932, 986, 1040, 1041, 1067, 1071
BseMI GCAATG 3 cut(s) 289, 540, 1027
BseMII CTCAG 8 cut(s) 86, 143, 546, 567, 585, 663, 741, 864
BseNI ACTGG 1 cut(s) 1054
BseRI GAGGAG 2 cut(s) 572, 689
BseXI GCAGC 9 cut(s) 55, 72, 88, 109, 607, 783, 805, 856, 1040
BseYI CCCAGC 3 cut(s) 111, 120, 838
BsgI GTGCAG 1 cut(s) 150
Bsh1236I CGCG 2 cut(s) 11, 357
BshFI GGCC 9 cut(s) 119, 201, 213, 240, 788, 966, 972, 979, 1053
BshNI GGYRCC 1 cut(s) 942
BsiSI CCGG 3 cut(s) 89, 548, 1050
BslI CCNNNNNNNGG 7 cut(s) 448, 932, 986, 1040, 1041, 1067, 1071
BsmAI GTCTC 2 cut(s) 545, 647
BsmBI CGTCTC 1 cut(s) 647
BsnI GGCC 9 cut(s) 119, 201, 213, 240, 788, 966, 972, 979, 1053
Bsp13I TCCGGA 1 cut(s) 547
Bsp143I GATC 4 cut(s) 22, 271, 457, 1045
Bsp1720I GCTNAGC 3 cut(s) 72, 129, 138
Bsp19I CCATGG 1 cut(s) 946
BspACI CCGC 6 cut(s) 9, 92, 357, 927, 1025, 1071
BspANI GGCC 9 cut(s) 119, 201, 213, 240, 788, 966, 972, 979, 1053
BspCNI CTCAG 8 cut(s) 85, 142, 547, 568, 586, 664, 742, 865
BspEI TCCGGA 1 cut(s) 547
BspFNI CGCG 2 cut(s) 11, 357
BspLI GGNNCC 6 cut(s) 51, 382, 561, 669, 944, 1047
BspPI GGATC 3 cut(s) 266, 1040, 1053
BspT107I GGYRCC 1 cut(s) 942
BsrDI GCAATG 3 cut(s) 289, 540, 1027
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 1 cut(s) 1054
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 9 cut(s) 202, 214, 241, 388, 443, 946, 967, 973, 1066
BssMI GATC 4 cut(s) 22, 271, 457, 1045
BssNI GRCGYC 1 cut(s) 397
BssSI CACGAG 1 cut(s) 375
BssT1I CCWWGG 1 cut(s) 946
Bst2BI CACGAG 1 cut(s) 375
Bst2UI CCWGG 2 cut(s) 564, 1005
Bst4CI ACNGT 2 cut(s) 646, 995
Bst6I CTCTTC 6 cut(s) 321, 654, 690, 711, 716, 876
BstACI GRCGYC 1 cut(s) 397
BstAPI GCANNNNNTGC 1 cut(s) 85
BstC8I GCNNGC 6 cut(s) 90, 117, 126, 135, 738, 927
BstDEI CTNAG 9 cut(s) 72, 129, 138, 555, 576, 594, 672, 750, 873
BstDSI CCRYGG 7 cut(s) 202, 214, 241, 388, 946, 967, 973
BstF5I GGATG 2 cut(s) 430, 1061
BstFNI CGCG 2 cut(s) 11, 357
BstHHI GCGC 3 cut(s) 97, 373, 861
BstKTI GATC 4 cut(s) 25, 274, 460, 1048
BstMAI GTCTC 2 cut(s) 545, 647
BstMBI GATC 4 cut(s) 22, 271, 457, 1045
BstNI CCWGG 2 cut(s) 564, 1005
BstPAI GACNNNNGTC 1 cut(s) 54
BstSCI CCNGG 3 cut(s) 562, 1003, 1048
BstSFI CTRYAG 1 cut(s) 313
BstUI CGCG 2 cut(s) 11, 357
BstV1I GCAGC 9 cut(s) 55, 72, 88, 109, 607, 783, 805, 856, 1040
BstV2I GAAGAC 1 cut(s) 752
BstX2I RGATCY 2 cut(s) 271, 1045
BstYI RGATCY 2 cut(s) 271, 1045
Bsu36I CCTNAGG 1 cut(s) 672
BsuI GTATCC 2 cut(s) 634, 983
BsuRI GGCC 9 cut(s) 119, 201, 213, 240, 788, 966, 972, 979, 1053
BtgI CCRYGG 7 cut(s) 202, 214, 241, 388, 946, 967, 973
BtgZI GCGATG 1 cut(s) 48
BtrI CACGTC 2 cut(s) 224, 479
BtsCI GGATG 2 cut(s) 430, 1061
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 2 cut(s) 472, 1000
Cac8I GCNNGC 6 cut(s) 90, 117, 126, 135, 738, 927
CaiI CAGNNNCTG 1 cut(s) 85
CfoI GCGC 3 cut(s) 97, 373, 861
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 4 cut(s) 49, 118, 977, 1001
CseI GACGC 2 cut(s) 363, 386
Csp6I GTAC 2 cut(s) 471, 943
CviAII CATG 2 cut(s) 790, 947
CviQI GTAC 2 cut(s) 471, 943
DdeI CTNAG 9 cut(s) 72, 129, 138, 555, 576, 594, 672, 750, 873
DpnI GATC 4 cut(s) 24, 273, 459, 1047
DpnII GATC 4 cut(s) 22, 271, 457, 1045
EaeI YGGCCR 5 cut(s) 199, 211, 238, 970, 1051
Eam1104I CTCTTC 6 cut(s) 321, 654, 690, 711, 716, 876
EarI CTCTTC 6 cut(s) 321, 654, 690, 711, 716, 876
Eco130I CCWWGG 1 cut(s) 946
Eco47I GGWCC 2 cut(s) 49, 1001
Eco57I CTGAAG 3 cut(s) 345, 941, 951
Eco81I CCTNAGG 1 cut(s) 672
EcoO109I RGGNCCY 2 cut(s) 49, 1001
EcoRII CCWGG 2 cut(s) 562, 1003
EcoT14I CCWWGG 1 cut(s) 946
ErhI CCWWGG 1 cut(s) 946
Esp3I CGTCTC 1 cut(s) 647
FaeI CATG 2 cut(s) 793, 950
FaiI YATR 4 cut(s) 192, 366, 791, 948
FatI CATG 2 cut(s) 789, 946
FauI CCCGC 3 cut(s) 350, 934, 1064
FokI GGATG 2 cut(s) 437, 1048
GlaI GCGC 3 cut(s) 96, 372, 860
GsaI CCCAGC 3 cut(s) 115, 124, 842
GsuI CTGGAG 1 cut(s) 1026
HaeIII GGCC 9 cut(s) 119, 201, 213, 240, 788, 966, 972, 979, 1053
HapII CCGG 3 cut(s) 89, 548, 1050
HgaI GACGC 2 cut(s) 363, 386
HhaI GCGC 3 cut(s) 97, 373, 861
Hin1I GRCGYC 1 cut(s) 397
Hin1II CATG 2 cut(s) 793, 950
Hin6I GCGC 3 cut(s) 95, 371, 859
HinP1I GCGC 3 cut(s) 95, 371, 859
HincII GTYRAC 1 cut(s) 59
HindII GTYRAC 1 cut(s) 59
HindIII AAGCTT 2 cut(s) 140, 342
HinfI GANTC 1 cut(s) 688
HpaII CCGG 3 cut(s) 89, 548, 1050
HphI GGTGA 2 cut(s) 431, 440
Hpy166II GTNNAC 3 cut(s) 59, 221, 772
Hpy188I TCNGA 7 cut(s) 325, 349, 447, 535, 705, 847, 921
Hpy188III TCNNGA 3 cut(s) 548, 606, 692
Hpy8I GTNNAC 3 cut(s) 59, 221, 772
Hpy99I CGWCG 2 cut(s) 402, 465
HpyCH4III ACNGT 2 cut(s) 646, 995
HpyCH4IV ACGT 3 cut(s) 223, 478, 496
HpyCH4V TGCA 3 cut(s) 167, 740, 793
HpyF3I CTNAG 9 cut(s) 72, 129, 138, 555, 576, 594, 672, 750, 873
HpySE526I ACGT 3 cut(s) 223, 478, 496
Hsp92I GRCGYC 1 cut(s) 397
Hsp92II CATG 2 cut(s) 793, 950
HspAI GCGC 3 cut(s) 95, 371, 859
Kpn2I TCCGGA 1 cut(s) 547
KpnI GGTACC 1 cut(s) 946
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Kzo9I GATC 4 cut(s) 22, 271, 457, 1045
LmnI GCTCC 3 cut(s) 550, 559, 667
Lsp1109I GCAGC 9 cut(s) 55, 72, 88, 109, 607, 783, 805, 856, 1040
LweI GCATC 1 cut(s) 616
MaeII ACGT 3 cut(s) 223, 478, 496
MaeIII GTNAC 2 cut(s) 407, 1010
MalI GATC 4 cut(s) 24, 273, 459, 1047
MboI GATC 4 cut(s) 22, 271, 457, 1045
MboII GAAGA 8 cut(s) 338, 592, 671, 707, 728, 733, 757, 893
MflI RGATCY 2 cut(s) 271, 1045
MluCI AATT 1 cut(s) 517
MlyI GAGTC 1 cut(s) 682
MroI TCCGGA 1 cut(s) 547
MroNI GCCGGC 1 cut(s) 88
MroXI GAANNNNTTC 1 cut(s) 17
MseI TTAA 3 cut(s) 264, 648, 909
MspA1I CMGCKG 2 cut(s) 796, 929
MspI CCGG 3 cut(s) 89, 548, 1050
MspR9I CCNGG 3 cut(s) 564, 1005, 1050
MvaI CCWGG 2 cut(s) 564, 1005
MvnI CGCG 2 cut(s) 11, 357
NaeI GCCGGC 1 cut(s) 90
NciI CCSGG 1 cut(s) 1050
NcoI CCATGG 1 cut(s) 946
NdeII GATC 4 cut(s) 22, 271, 457, 1045
NgoMIV GCCGGC 1 cut(s) 88
NlaIII CATG 2 cut(s) 793, 950
NlaIV GGNNCC 6 cut(s) 51, 382, 561, 669, 944, 1047
NmeAIII GCCGAG 1 cut(s) 1047
PdiI GCCGGC 1 cut(s) 90
PdmI GAANNNNTTC 1 cut(s) 17
PflMI CCANNNNNTGG 1 cut(s) 986
PleI GAGTC 1 cut(s) 682
PpsI GAGTC 1 cut(s) 682
PpuMI RGGWCCY 2 cut(s) 49, 1001
PshAI GACNNNNGTC 1 cut(s) 54
PshBI ATTAAT 1 cut(s) 909
Psp5II RGGWCCY 2 cut(s) 49, 1001
Psp6I CCWGG 2 cut(s) 562, 1003
PspFI CCCAGC 3 cut(s) 111, 120, 838
PspGI CCWGG 2 cut(s) 562, 1003
PspN4I GGNNCC 6 cut(s) 51, 382, 561, 669, 944, 1047
PspPI GGNCC 4 cut(s) 49, 118, 977, 1001
PspPPI RGGWCCY 2 cut(s) 49, 1001
PstNI CAGNNNCTG 1 cut(s) 85
PsuI RGATCY 2 cut(s) 271, 1045
PvuII CAGCTG 1 cut(s) 796
RsaI GTAC 2 cut(s) 472, 944
RsaNI GTAC 2 cut(s) 471, 943
SaqAI TTAA 3 cut(s) 264, 648, 909
Sau3AI GATC 4 cut(s) 22, 271, 457, 1045
Sau96I GGNCC 4 cut(s) 49, 118, 977, 1001
SchI GAGTC 1 cut(s) 682
ScrFI CCNGG 3 cut(s) 564, 1005, 1050
SfaNI GCATC 1 cut(s) 616
SfcI CTRYAG 1 cut(s) 313
SinI GGWCC 2 cut(s) 49, 1001
SmlI CTYRAG 1 cut(s) 1015
SmoI CTYRAG 1 cut(s) 1015
Sse9I AATT 1 cut(s) 517
SsiI CCGC 6 cut(s) 9, 92, 357, 927, 1025, 1071
SspI AATATT 1 cut(s) 828
StyD4I CCNGG 3 cut(s) 562, 1003, 1048
StyI CCWWGG 1 cut(s) 946
TaaI ACNGT 2 cut(s) 646, 995
TaiI ACGT 3 cut(s) 226, 481, 499
TaqI TCGA 2 cut(s) 21, 961
TasI AATT 1 cut(s) 517
TauI GCSGC 2 cut(s) 95, 1028
Tru1I TTAA 3 cut(s) 264, 648, 909
Tru9I TTAA 3 cut(s) 264, 648, 909
TscAI CASTG 2 cut(s) 472, 1000
TseI GCWGC 9 cut(s) 68, 76, 85, 97, 620, 793, 796, 869, 1028
TspDTI ATGAA 2 cut(s) 207, 837
TspGWI ACGGA 2 cut(s) 377, 671
TspRI CASTG 2 cut(s) 472, 1000
Van91I CCANNNNNTGG 1 cut(s) 986
VpaK11BI GGWCC 2 cut(s) 49, 1001
VspI ATTAAT 1 cut(s) 909
XcmI CCANNNNNNNNNTGG 1 cut(s) 953
XmnI GAANNNNTTC 1 cut(s) 17
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.