Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002180.1

Orthogroup ID

OG0001809

Physical Location & Seq

Genomic Coordinates Reverse (-)

58315 .. 61654

Gene Structure 3340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002180.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1206 bp

atggtaagagggcctctcgatcttcagctatggatgtctctgtgcgttttgctcgttcttcctgctcgatgcttctacatccctgctggcgttgcgcctcaggattctcaaaacgttcttttggaagctgcaatggtgcttgtagattgggagctaagagaggaagctatattagcggaaatggatgaaatgcctgatgaagactttgaaactgagtatcaaaatcttgttattcagcttgatgatgttgaacctatcgatggtaatgcgcatgatgctacagttgaacttgaatatctggctctattaaatcagcctgatggtgcggtggatctgcatcccatttctaatgatcatcgtgcccatttagagggaaacactactggacagtattgttgtgaaaccaaagtgagggaaggtggaagaggaggtggcggccgagggattggtggtgagggctgtggatttggtggagataatctggatcgtagcaatgatgagaacactaatgatttctctggtggagggtacagcaaacctgaagagggagatacggatgtttctgaaaggcgtggtttctacgggggacctcatggttccttgcgtggtggcttttgcaatggagaggatgcagaagaggagtgtccttggaggatattcgtccttcgcagtggcagtggaactggacaaggggagctagagcctggcactgaagttgagaaagatgttggtgctgagaagcagttgggagagaatggagctgctgatgccaccaaggagaatcctgtgggtgagccagaagagaaggagcctgaggagaaggagatgactctggaaaagtatgagaaggttctcgaagagaagagaaaggctctggctgcactgaagactgaggagagaaaggttgacttggacaaagagttgaagtcaatgcagcagctctctcgcaagaagacaaatgatgaaatatttatcaagctgggttctgagaaggatataagcaaggaagctgctgagaaggaggagagagccaataagcctgctgaaggggaggaccagatgttttatggtggtcgtaatcggagtggtggaggccgtggttcaagaggtggacacagtggaggagaacatggaggttacttgagcaatgtgcaagcaccctccattacagattctgggcacttaccatccgttggtggcaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HABP4_PAI-RBP1 Stm1_N

Protein Analysis

401

Amino Acids

43.52

Weight (kDa)

4.56

Isoelectric Point (pI)

40.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16830 AT4G16830 AT4G16830
fragaria_vesca	FvH4_5g20020 FvH4_5g20020 FvH4_5g20020 FvH4_7g10280
malus_domestica	MD02G1213500.v1.1 MD04G1050100.v1.1 MD06G1049800.v1.1 MD07G1109500.v1.1
prunus_persica	Prupe.2G132500_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1
pyrus_communis	pycom04g04410 pycom06g04220 pycom07g09400 pycom12646g00030
rosa_chinensis	RchiOBHm_Chr1g0348031 RchiOBHm_Chr7g0204831 RchiOBHm_Chr7g0204851
rosa_laevigata	RLG00000003428 RLG00000028697
rosa_multiflora	Rmu_sc0002180.1_g000016 Rmu_sc0002180.1_g000023 Rmu_ssc0000263.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252730 Rroxscaffold_4G00307320
rosa_rugosa	Rorug01G0190700 Rorug01G0190800 Rorug07G0086000 Rorug07G0086000 Rorug07G0086100
rosa_samantha	Rh1AG209300 Rh1BG174300 Rh1CG193700 Rh1DG204100 Rh7AG216500 Rh7AG216700 Rh7BG213600 Rh7CG230000 Rh7DG224100 Rh7DG224300
rosa_wichuraiana	Rw1G017440 Rw7G018760 Rw7G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	270
AccB7I	CCANNNNNTGG	1 cut(s)	1193
AciI	CCGC	3 cut(s)	176, 326, 435
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	2 cut(s)	339, 492
AcoI	YGGCCR	1 cut(s)	436
AcuI	CTGAAG	5 cut(s)	8, 561, 732, 905, 1065
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	6 cut(s)	260, 370, 411, 545, 1046, 1193
AgsI	TTSAA	6 cut(s)	209, 251, 287, 293, 925, 1104
AjnI	CCWGG	1 cut(s)	703
Alw26I	GTCTC	1 cut(s)	42
AlwI	GGATC	2 cut(s)	339, 492
AlwNI	CAGNNNCTG	1 cut(s)	1175
AoxI	GGCC	3 cut(s)	11, 436, 1093
ApeKI	GCWGC	6 cut(s)	128, 761, 878, 934, 937, 1010
AspLEI	GCGC	2 cut(s)	97, 271
AspS9I	GGNCC	3 cut(s)	11, 587, 1054
AsuHPI	GGTGA	2 cut(s)	464, 803
AvaII	GGWCC	2 cut(s)	587, 1054
AxyI	CCTNAGG	2 cut(s)	99, 813
BaeGI	GKGCMC	2 cut(s)	364, 1182
BaeI	ACNNNNGTAYC	2 cut(s)	543, 576
BbsI	GAAGAC	3 cut(s)	207, 893, 959
BbvI	GCAGC	6 cut(s)	115, 748, 865, 946, 949, 997
BccI	CCATC	3 cut(s)	254, 314, 1195
BceAI	ACGGC	1 cut(s)	1080
BcgI	CGANNNNNNTGC	4 cut(s)	248, 282, 926, 960
BciT130I	CCWGG	1 cut(s)	705
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	1 cut(s)	42
BfaI	CTAG	1 cut(s)	698
BfmI	CTRYAG	1 cut(s)	279
BisI	GCNGC	7 cut(s)	129, 436, 762, 879, 935, 938, 1011
BlsI	GCNGC	7 cut(s)	130, 437, 763, 880, 936, 939, 1012
Bme1390I	CCNGG	1 cut(s)	705
Bme18I	GGWCC	2 cut(s)	587, 1054
BmgT120I	GGNCC	3 cut(s)	11, 587, 1054
BmiI	GGNNCC	3 cut(s)	588, 598, 810
BmrFI	CCNGG	1 cut(s)	705
BmsI	GCATC	5 cut(s)	59, 265, 346, 619, 757
BpiI	GAAGAC	3 cut(s)	207, 893, 959
BplI	GAGNNNNNCTC	3 cut(s)	32, 856, 888
BpuEI	CTTGAG	1 cut(s)	1162
Bsa29I	ATCGAT	1 cut(s)	258
BsaBI	GATNNNNATC	1 cut(s)	336
BsaJI	CCNNGG	4 cut(s)	439, 647, 774, 1096
Bsc4I	CCNNNNNNNGG	6 cut(s)	260, 370, 411, 545, 1046, 1193
Bse1I	ACTGG	2 cut(s)	388, 688
Bse21I	CCTNAGG	2 cut(s)	99, 813
Bse3DI	GCAATG	4 cut(s)	138, 499, 625, 1153
Bse8I	GATNNNNATC	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	705
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	4 cut(s)	439, 647, 774, 1096
BseGI	GGATG	7 cut(s)	39, 78, 190, 337, 562, 634, 1187
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	6 cut(s)	260, 370, 411, 545, 1046, 1193
BseMI	GCAATG	4 cut(s)	138, 499, 625, 1153
BseMII	CTCAG	7 cut(s)	113, 204, 726, 804, 882, 978, 1005
BseNI	ACTGG	2 cut(s)	388, 688
BseRI	GAGGAG	6 cut(s)	441, 653, 830, 908, 1037, 1137
BseSI	GKGCMC	2 cut(s)	364, 1182
BseX3I	CGGCCG	1 cut(s)	436
BseXI	GCAGC	6 cut(s)	115, 748, 865, 946, 949, 997
BseYI	CCCAGC	1 cut(s)	979
BsgI	GTGCAG	1 cut(s)	864
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	3 cut(s)	13, 438, 1095
BshVI	ATCGAT	1 cut(s)	258
BsiEI	CGRYCG	1 cut(s)	439
BslFI	GGGAC	1 cut(s)	600
BslI	CCNNNNNNNGG	6 cut(s)	260, 370, 411, 545, 1046, 1193
BsmAI	GTCTC	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	600
BsnI	GGCC	3 cut(s)	13, 438, 1095
Bsp1286I	GDGCHC	2 cut(s)	364, 1182
Bsp143I	GATC	4 cut(s)	19, 331, 352, 484
BspACI	CCGC	3 cut(s)	176, 326, 435
BspANI	GGCC	3 cut(s)	13, 438, 1095
BspCNI	CTCAG	7 cut(s)	112, 205, 727, 805, 883, 979, 1006
BspDI	ATCGAT	1 cut(s)	258
BspLI	GGNNCC	3 cut(s)	588, 598, 810
BspPI	GGATC	2 cut(s)	339, 492
BsrDI	GCAATG	4 cut(s)	138, 499, 625, 1153
BsrI	ACTGG	2 cut(s)	388, 688
BssECI	CCNNGG	4 cut(s)	439, 647, 774, 1096
BssMI	GATC	4 cut(s)	19, 331, 352, 484
BssT1I	CCWWGG	2 cut(s)	647, 774
Bst2UI	CCWGG	1 cut(s)	705
Bst4CI	ACNGT	3 cut(s)	283, 390, 1118
Bst6I	CTCTTC	6 cut(s)	418, 537, 630, 795, 852, 857
BstC8I	GCNNGC	3 cut(s)	88, 1041, 1155
BstDEI	CTNAG	8 cut(s)	99, 155, 213, 735, 813, 891, 987, 1014
BstDSI	CCRYGG	1 cut(s)	1096
BstENI	CCTNNNNNAGG	1 cut(s)	1044
BstF5I	GGATG	7 cut(s)	39, 78, 190, 337, 562, 634, 1187
BstHHI	GCGC	2 cut(s)	97, 271
BstKTI	GATC	4 cut(s)	22, 334, 355, 487
BstMAI	GTCTC	1 cut(s)	42
BstMBI	GATC	4 cut(s)	19, 331, 352, 484
BstMCI	CGRYCG	1 cut(s)	439
BstMWI	GCNNNNNNNGC	5 cut(s)	92, 173, 275, 767, 878
BstNI	CCWGG	1 cut(s)	705
BstSCI	CCNGG	1 cut(s)	703
BstSFI	CTRYAG	1 cut(s)	279
BstSLI	GKGCMC	2 cut(s)	364, 1182
BstV1I	GCAGC	6 cut(s)	115, 748, 865, 946, 949, 997
BstV2I	GAAGAC	3 cut(s)	207, 893, 959
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BstZI	CGGCCG	1 cut(s)	436
Bsu15I	ATCGAT	1 cut(s)	258
Bsu36I	CCTNAGG	2 cut(s)	99, 813
BsuRI	GGCC	3 cut(s)	13, 438, 1095
BsuTUI	ATCGAT	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	1096
BtsCI	GGATG	7 cut(s)	39, 78, 190, 337, 562, 634, 1187
BtsI	GCAGTG	2 cut(s)	676, 682
BtsIMutI	CAGTG	5 cut(s)	676, 682, 708, 881, 1123
Cac8I	GCNNGC	3 cut(s)	88, 1041, 1155
CaiI	CAGNNNCTG	1 cut(s)	1175
CfoI	GCGC	2 cut(s)	97, 271
Cfr13I	GGNCC	3 cut(s)	11, 587, 1054
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	3 cut(s)	272, 593, 1130
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	8 cut(s)	99, 155, 213, 735, 813, 891, 987, 1014
DpnI	GATC	4 cut(s)	21, 333, 354, 486
DpnII	GATC	4 cut(s)	19, 331, 352, 484
EaeI	YGGCCR	1 cut(s)	436
EagI	CGGCCG	1 cut(s)	436
Eam1104I	CTCTTC	6 cut(s)	418, 537, 630, 795, 852, 857
EarI	CTCTTC	6 cut(s)	418, 537, 630, 795, 852, 857
EclXI	CGGCCG	1 cut(s)	436
Eco130I	CCWWGG	2 cut(s)	647, 774
Eco47I	GGWCC	2 cut(s)	587, 1054
Eco52I	CGGCCG	1 cut(s)	436
Eco57I	CTGAAG	5 cut(s)	8, 561, 732, 905, 1065
Eco81I	CCTNAGG	2 cut(s)	99, 813
EcoNI	CCTNNNNNAGG	1 cut(s)	1044
EcoO109I	RGGNCCY	2 cut(s)	11, 587
EcoRII	CCWGG	1 cut(s)	703
EcoT14I	CCWWGG	2 cut(s)	647, 774
ErhI	CCWWGG	2 cut(s)	647, 774
FaeI	CATG	3 cut(s)	275, 596, 1133
FaiI	YATR	8 cut(s)	31, 170, 273, 594, 843, 998, 1068, 1131
FalI	AAGNNNNNCTT	2 cut(s)	893, 925
FaqI	GGGAC	1 cut(s)	600
FatI	CATG	3 cut(s)	271, 592, 1129
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	7 cut(s)	129, 436, 762, 879, 935, 938, 1011
FokI	GGATG	7 cut(s)	46, 65, 197, 324, 569, 641, 1174
Fsp4HI	GCNGC	7 cut(s)	129, 436, 762, 879, 935, 938, 1011
FspAI	RTGCGCAY	1 cut(s)	270
FspBI	CTAG	1 cut(s)	698
FspI	TGCGCA	1 cut(s)	270
GlaI	GCGC	2 cut(s)	96, 270
GluI	GCNGC	7 cut(s)	129, 436, 762, 879, 935, 938, 1011
GsaI	CCCAGC	1 cut(s)	983
HaeIII	GGCC	3 cut(s)	13, 438, 1095
HhaI	GCGC	2 cut(s)	97, 271
Hin1II	CATG	3 cut(s)	275, 596, 1133
Hin6I	GCGC	2 cut(s)	95, 269
HinP1I	GCGC	2 cut(s)	95, 269
HincII	GTYRAC	1 cut(s)	907
HindII	GTYRAC	1 cut(s)	907
HinfI	GANTC	4 cut(s)	104, 781, 829, 1172
HphI	GGTGA	2 cut(s)	464, 803
Hpy166II	GTNNAC	2 cut(s)	907, 1112
Hpy188I	TCNGA	3 cut(s)	565, 988, 1083
Hpy188III	TCNNGA	6 cut(s)	17, 101, 482, 833, 854, 1104
Hpy8I	GTNNAC	2 cut(s)	907, 1112
HpyAV	CCTTC	8 cut(s)	410, 674, 799, 814, 841, 985, 1012, 1040
HpyCH4III	ACNGT	3 cut(s)	283, 390, 1118
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	7 cut(s)	131, 337, 618, 632, 881, 934, 1153
HpyF10VI	GCNNNNNNNGC	5 cut(s)	92, 173, 275, 767, 878
HpyF3I	CTNAG	8 cut(s)	99, 155, 213, 735, 813, 891, 987, 1014
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	275, 596, 1133
HspAI	GCGC	2 cut(s)	95, 269
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	19, 331, 352, 484
LmnI	GCTCC	4 cut(s)	151, 694, 758, 808
Lsp1109I	GCAGC	6 cut(s)	115, 748, 865, 946, 949, 997
LweI	GCATC	5 cut(s)	59, 265, 346, 619, 757
MaeI	CTAG	1 cut(s)	698
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	1136
MalI	GATC	4 cut(s)	21, 333, 354, 486
MboI	GATC	4 cut(s)	19, 331, 352, 484
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	2 cut(s)	364, 1182
MlyI	GAGTC	1 cut(s)	823
MseI	TTAA	1 cut(s)	308
MspR9I	CCNGG	1 cut(s)	705
MvaI	CCWGG	1 cut(s)	705
MwoI	GCNNNNNNNGC	5 cut(s)	92, 173, 275, 767, 878
NdeII	GATC	4 cut(s)	19, 331, 352, 484
NlaIII	CATG	3 cut(s)	275, 596, 1133
NlaIV	GGNNCC	3 cut(s)	588, 598, 810
NmeAIII	GCCGAG	1 cut(s)	464
NsbI	TGCGCA	1 cut(s)	270
PfeI	GAWTC	3 cut(s)	104, 781, 1172
PflMI	CCANNNNNTGG	1 cut(s)	1193
PkrI	GCNGC	7 cut(s)	130, 437, 763, 880, 936, 939, 1012
PleI	GAGTC	1 cut(s)	823
PpsI	GAGTC	1 cut(s)	823
PpuMI	RGGWCCY	1 cut(s)	587
Psp1406I	AACGTT	1 cut(s)	114
Psp5II	RGGWCCY	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	703
PspFI	CCCAGC	1 cut(s)	979
PspGI	CCWGG	1 cut(s)	703
PspN4I	GGNNCC	3 cut(s)	588, 598, 810
PspPI	GGNCC	3 cut(s)	11, 587, 1054
PspPPI	RGGWCCY	1 cut(s)	587
PstNI	CAGNNNCTG	1 cut(s)	1175
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SaqAI	TTAA	1 cut(s)	308
SatI	GCNGC	7 cut(s)	129, 436, 762, 879, 935, 938, 1011
Sau3AI	GATC	4 cut(s)	19, 331, 352, 484
Sau96I	GGNCC	3 cut(s)	11, 587, 1054
SchI	GAGTC	1 cut(s)	823
ScrFI	CCNGG	1 cut(s)	705
SduI	GDGCHC	2 cut(s)	364, 1182
SfaNI	GCATC	5 cut(s)	59, 265, 346, 619, 757
SfcI	CTRYAG	1 cut(s)	279
SinI	GGWCC	2 cut(s)	587, 1054
SmlI	CTYRAG	1 cut(s)	1141
SmoI	CTYRAG	1 cut(s)	1141
SsiI	CCGC	3 cut(s)	176, 326, 435
SspI	AATATT	1 cut(s)	969
SspMI	CTAG	1 cut(s)	698
StyD4I	CCNGG	1 cut(s)	703
StyI	CCWWGG	2 cut(s)	647, 774
TaaI	ACNGT	3 cut(s)	283, 390, 1118
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	4 cut(s)	18, 67, 258, 855
TauI	GCSGC	1 cut(s)	438
TfiI	GAWTC	3 cut(s)	104, 781, 1172
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	5 cut(s)	676, 682, 715, 888, 1123
TseI	GCWGC	6 cut(s)	128, 761, 878, 934, 937, 1010
TspDTI	ATGAA	3 cut(s)	201, 213, 978
TspGWI	ACGGA	2 cut(s)	569, 1180
TspRI	CASTG	5 cut(s)	676, 682, 715, 888, 1123
Van91I	CCANNNNNTGG	1 cut(s)	1193
VpaK11BI	GGWCC	2 cut(s)	587, 1054
XagI	CCTNNNNNAGG	1 cut(s)	1044
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1064
XspI	CTAG	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.