Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001809

Physical Location & Seq

Genomic Coordinates Forward (+)

11813727 .. 11817091

Gene Structure 3365 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g20020.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGCAACCGCGAACCCTTTCGATCTCTTGGGAGATGACGACAACGACGACGTCAGTCAACTTGCGGCTAAGGTGGTGGTTCCTGCCGCCGCCGTCCAGCCCAAGAAGGGCGCTCAGGCCCCAGCTGCTCAGCCTGCTAAGTCGGCTAAGCTCCCCACCAAGCCTCCCCCGCCTGCTCAGGCTGTGAGGGAAGGTGGACGTGGAGGTGGCCGTGGCGGCGGGCGTGGGTTTGGTGGTGAGGGCCGTGGGTATGGCGGCGAGGGACGTGGGTATGGTCGTGGACGTGGTGGAGGTGGAAGTGGTGGTGGATATGGTGGGTATAATCGGGAGCGTAGCAATGATGAGAACACCAATGGTTTCTCAGGTGGAGGGTACAGCAAACCTGAGGAGGGAGATAGGGATGTTTCTGAAAGGCGTGGAGGCTATGGAGGGCCTCGTGGTTCCTTCCGTGGCGGACGCCGTGGTGGCTTTGGCAACGGTGAGGATGCTGAAGGGGAGCGTCCTCGGAGGACATTTGACCGTCGCAGTGGAACTGGACGTGGAAGTGACTTTAAACGTGATGGAGCTGGTCGTGGGAATTGGGGAACTCCCACTGATGAAATTGCTTCGGAGGTGGAGCCTGGCACTGAAGTCGAGAAGGATGTTGATGCTGAGAAGCCGTTGGGAGAGAACGAGGCTGCTGATGCCAACAAGGAGAATGCTGAGGATGAGCCAAAAGAGAAGGAGCCTGAGGAGAAGGAGATGACTTTGGAAGAGTATGAGAAGGTTCTTGAAGAGAAGAGGAAGGCTCTGGCTGCACTGAAAACTGAGGAGAGGAAGGTTGACTTGGACAAAGAGTTGAAGTCTATGCAGCAGCTCTCAAGCAAGAAGACAAATGATGAAATCTTTATCAAGCTGGGTTCTGAAAAGGATAAAAGGAAGGAAGCTGCTGAGAAGGAGGAGAGAGCCAAGAAGGTTGTTAGCATAAATGAATTCCTGAAGCCTGCTGAAGGGGAGAGCCAGAGGCACTACAGTGGTCGTAATCGGGGCCGTGGAGGCCGTGGTTCAAGAGGTGGATACAGTGGAGAAGGACATGGAGGTCACTCGAGCAATGCCAATGCCAAACCAGCACCCTCCATTGCAGATACTGCGCTCTTTCCATCTCTCGGTGGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HABP4_PAI-RBP1 Stm1_N

Protein Analysis

386

Amino Acids

40.7

Weight (kDa)

6.92

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Stm1_N	PF09598	1 - 74	4.3e-22	Stm1
HABP4_PAI-RBP1	PF04774	189 - 252	2.3e-08	Hyaluronan / mRNA binding family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16830 AT4G16830 AT4G16830
fragaria_vesca	FvH4_5g20020 FvH4_5g20020 FvH4_5g20020 FvH4_7g10280
malus_domestica	MD02G1213500.v1.1 MD04G1050100.v1.1 MD06G1049800.v1.1 MD07G1109500.v1.1
prunus_persica	Prupe.2G132500_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1
pyrus_communis	pycom04g04410 pycom06g04220 pycom07g09400 pycom12646g00030
rosa_chinensis	RchiOBHm_Chr1g0348031 RchiOBHm_Chr7g0204831 RchiOBHm_Chr7g0204851
rosa_laevigata	RLG00000003428 RLG00000028697
rosa_multiflora	Rmu_sc0002180.1_g000016 Rmu_sc0002180.1_g000023 Rmu_ssc0000263.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252730 Rroxscaffold_4G00307320
rosa_rugosa	Rorug01G0190700 Rorug01G0190800 Rorug07G0086000 Rorug07G0086000 Rorug07G0086100
rosa_samantha	Rh1AG209300 Rh1BG174300 Rh1CG193700 Rh1DG204100 Rh7AG216500 Rh7AG216700 Rh7BG213600 Rh7CG230000 Rh7DG224100 Rh7DG224300
rosa_wichuraiana	Rw1G017440 Rw7G018760 Rw7G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1077
AatII	GACGTC	1 cut(s)	54
AccII	CGCG	1 cut(s)	11
AciI	CCGC	9 cut(s)	9, 65, 87, 90, 170, 216, 219, 255, 453
AcoI	YGGCCR	1 cut(s)	208
AcsI	RAATTY	1 cut(s)	971
AcuI	CTGAAG	4 cut(s)	510, 648, 998, 1008
AcyI	GRCGYC	2 cut(s)	51, 457
AfaI	GTAC	1 cut(s)	374
AfiI	CCNNNNNNNGG	4 cut(s)	107, 389, 989, 1145
AgsI	TTSAA	3 cut(s)	773, 841, 1047
AjiI	CACGTC	4 cut(s)	200, 266, 284, 539
AjnI	CCWGG	1 cut(s)	619
AjuI	GAANNNNNNNTTGG	2 cut(s)	809, 841
AleI	CACNNNNGTG	1 cut(s)	1011
AluBI	AGCT	6 cut(s)	125, 151, 566, 856, 895, 926
AluI	AGCT	6 cut(s)	125, 151, 566, 856, 895, 926
AlwNI	CAGNNNCTG	1 cut(s)	1127
Ama87I	CYCGRG	1 cut(s)	1084
AoxI	GGCC	6 cut(s)	117, 208, 241, 431, 1027, 1036
ApeKI	GCWGC	6 cut(s)	125, 677, 794, 850, 853, 926
ApoI	RAATTY	1 cut(s)	971
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	113, 1132
AspS9I	GGNCC	4 cut(s)	118, 241, 431, 1027
AsuHPI	GGTGA	2 cut(s)	248, 491
AvaI	CYCGRG	1 cut(s)	1084
AxyI	CCTNAGG	2 cut(s)	384, 729
BauI	CACGAG	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	875
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	6 cut(s)	112, 664, 781, 862, 865, 913
BccI	CCATC	2 cut(s)	554, 1147
BceAI	ACGGC	7 cut(s)	77, 195, 228, 444, 643, 1014, 1023
BcgI	CGANNNNNNTGC	2 cut(s)	613, 647
BciT130I	CCWGG	1 cut(s)	621
BciVI	GTATCC	1 cut(s)	1049
BfmI	CTRYAG	1 cut(s)	1009
BfoI	RGCGCY	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	1049
BglI	GCCNNNNNGGC	3 cut(s)	216, 465, 1035
BlpI	GCTNAGC	2 cut(s)	129, 147
Bme1390I	CCNGG	1 cut(s)	621
BmeT110I	CYCGRG	1 cut(s)	1084
BmgBI	CACGTC	4 cut(s)	200, 266, 284, 539
BmgT120I	GGNCC	4 cut(s)	118, 241, 431, 1027
BmiI	GGNNCC	6 cut(s)	81, 120, 442, 618, 726, 1028
BmrFI	CCNGG	1 cut(s)	621
BmsI	GCATC	3 cut(s)	475, 637, 673
BoxI	GACNNNNGTC	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	875
BplI	GAGNNNNNCTC	2 cut(s)	772, 804
Bpu10I	CCTNAGC	4 cut(s)	69, 114, 177, 702
Bpu1102I	GCTNAGC	2 cut(s)	129, 147
BpuEI	CTTGAG	1 cut(s)	844
BsaHI	GRCGYC	2 cut(s)	51, 457
BsaJI	CCNNGG	7 cut(s)	211, 244, 448, 460, 503, 1030, 1039
BsaXI	ACNNNNNCTCC	2 cut(s)	148, 178
Bsc4I	CCNNNNNNNGG	4 cut(s)	107, 389, 989, 1145
Bse1I	ACTGG	1 cut(s)	538
Bse21I	CCTNAGG	2 cut(s)	384, 729
Bse3DI	GCAATG	3 cut(s)	343, 1096, 1116
BseBI	CCWGG	1 cut(s)	621
BseDI	CCNNGG	7 cut(s)	211, 244, 448, 460, 503, 1030, 1039
BseGI	GGATG	4 cut(s)	406, 490, 646, 712
BseLI	CCNNNNNNNGG	4 cut(s)	107, 389, 989, 1145
BseMI	GCAATG	3 cut(s)	343, 1096, 1116
BseNI	ACTGG	1 cut(s)	538
BseRI	GAGGAG	4 cut(s)	401, 746, 824, 953
BseXI	GCAGC	6 cut(s)	112, 664, 781, 862, 865, 913
BseYI	CCCAGC	2 cut(s)	121, 895
BsgI	GTGCAG	1 cut(s)	780
Bsh1236I	CGCG	1 cut(s)	11
BshFI	GGCC	6 cut(s)	119, 210, 243, 433, 1029, 1038
BsiHKCI	CYCGRG	1 cut(s)	1084
BslFI	GGGAC	1 cut(s)	276
BslI	CCNNNNNNNGG	4 cut(s)	107, 389, 989, 1145
BsmFI	GGGAC	1 cut(s)	276
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	6 cut(s)	119, 210, 243, 433, 1029, 1038
BsoBI	CYCGRG	1 cut(s)	1084
Bsp143I	GATC	1 cut(s)	22
Bsp1720I	GCTNAGC	2 cut(s)	129, 147
BspACI	CCGC	9 cut(s)	9, 65, 87, 90, 170, 216, 219, 255, 453
BspANI	GGCC	6 cut(s)	119, 210, 243, 433, 1029, 1038
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	6 cut(s)	81, 120, 442, 618, 726, 1028
BsrDI	GCAATG	3 cut(s)	343, 1096, 1116
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	7 cut(s)	211, 244, 448, 460, 503, 1030, 1039
BssMI	GATC	1 cut(s)	22
BssNI	GRCGYC	2 cut(s)	51, 457
BssSI	CACGAG	1 cut(s)	435
Bst2BI	CACGAG	1 cut(s)	435
Bst2UI	CCWGG	1 cut(s)	621
Bst4CI	ACNGT	4 cut(s)	479, 521, 1013, 1061
Bst6I	CTCTTC	3 cut(s)	747, 768, 773
BstACI	GRCGYC	2 cut(s)	51, 457
BstAPI	GCANNNNNTGC	1 cut(s)	1127
BstC8I	GCNNGC	4 cut(s)	135, 174, 221, 984
BstDSI	CCRYGG	6 cut(s)	211, 244, 448, 460, 1030, 1039
BstENI	CCTNNNNNAGG	1 cut(s)	987
BstF5I	GGATG	4 cut(s)	406, 490, 646, 712
BstFNI	CGCG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	2 cut(s)	113, 1132
BstKTI	GATC	1 cut(s)	25
BstMBI	GATC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	621
BstPAI	GACNNNNGTC	1 cut(s)	54
BstSCI	CCNGG	1 cut(s)	619
BstSFI	CTRYAG	1 cut(s)	1009
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	6 cut(s)	112, 664, 781, 862, 865, 913
BstV2I	GAAGAC	1 cut(s)	875
Bsu36I	CCTNAGG	2 cut(s)	384, 729
BsuI	GTATCC	1 cut(s)	1049
BsuRI	GGCC	6 cut(s)	119, 210, 243, 433, 1029, 1038
BtgI	CCRYGG	6 cut(s)	211, 244, 448, 460, 1030, 1039
BtrI	CACGTC	4 cut(s)	200, 266, 284, 539
BtsCI	GGATG	4 cut(s)	406, 490, 646, 712
BtsI	GCAGTG	1 cut(s)	532
BtsIMutI	CAGTG	6 cut(s)	532, 591, 624, 797, 1018, 1066
Cac8I	GCNNGC	4 cut(s)	135, 174, 221, 984
CaiI	CAGNNNCTG	1 cut(s)	1127
CfoI	GCGC	2 cut(s)	113, 1132
Cfr13I	GGNCC	4 cut(s)	118, 241, 431, 1027
CseI	GACGC	2 cut(s)	465, 488
Csp6I	GTAC	1 cut(s)	373
CviAII	CATG	1 cut(s)	1073
CviQI	GTAC	1 cut(s)	373
DpnI	GATC	1 cut(s)	24
DpnII	GATC	1 cut(s)	22
DraI	TTTAAA	1 cut(s)	553
DrdI	GACNNNNNNGTC	1 cut(s)	1077
DseDI	GACNNNNNNGTC	1 cut(s)	1077
EaeI	YGGCCR	1 cut(s)	208
Eam1104I	CTCTTC	3 cut(s)	747, 768, 773
EarI	CTCTTC	3 cut(s)	747, 768, 773
EciI	GGCGGA	1 cut(s)	468
Eco57I	CTGAAG	4 cut(s)	510, 648, 998, 1008
Eco81I	CCTNAGG	2 cut(s)	384, 729
Eco88I	CYCGRG	1 cut(s)	1084
EcoNI	CCTNNNNNAGG	1 cut(s)	987
EcoO109I	RGGNCCY	2 cut(s)	118, 431
EcoRI	GAATTC	1 cut(s)	971
EcoRII	CCWGG	1 cut(s)	619
FaeI	CATG	1 cut(s)	1076
FaiI	YATR	9 cut(s)	252, 273, 312, 321, 426, 759, 848, 965, 1074
FalI	AAGNNNNNCTT	2 cut(s)	809, 841
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	1 cut(s)	1072
FauI	CCCGC	2 cut(s)	177, 212
FokI	GGATG	4 cut(s)	413, 497, 653, 719
GlaI	GCGC	2 cut(s)	112, 1131
GsaI	CCCAGC	2 cut(s)	125, 899
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	6 cut(s)	119, 210, 243, 433, 1029, 1038
HgaI	GACGC	2 cut(s)	465, 488
HhaI	GCGC	2 cut(s)	113, 1132
Hin1I	GRCGYC	2 cut(s)	51, 457
Hin1II	CATG	1 cut(s)	1076
Hin6I	GCGC	2 cut(s)	111, 1130
HinP1I	GCGC	2 cut(s)	111, 1130
HincII	GTYRAC	2 cut(s)	59, 823
HindII	GTYRAC	2 cut(s)	59, 823
HphI	GGTGA	2 cut(s)	248, 491
Hpy166II	GTNNAC	4 cut(s)	59, 197, 281, 823
Hpy188I	TCNGA	4 cut(s)	409, 507, 610, 904
Hpy188III	TCNNGA	5 cut(s)	326, 634, 770, 976, 1047
Hpy8I	GTNNAC	4 cut(s)	59, 197, 281, 823
Hpy99I	CGWCG	3 cut(s)	50, 53, 525
HpyCH4III	ACNGT	4 cut(s)	479, 521, 1013, 1061
HpyCH4IV	ACGT	6 cut(s)	51, 199, 265, 283, 538, 556
HpyCH4V	TGCA	3 cut(s)	797, 850, 1121
HpySE526I	ACGT	6 cut(s)	51, 199, 265, 283, 538, 556
Hsp92I	GRCGYC	2 cut(s)	51, 457
Hsp92II	CATG	1 cut(s)	1076
HspAI	GCGC	2 cut(s)	111, 1130
Kzo9I	GATC	1 cut(s)	22
LmnI	GCTCC	6 cut(s)	156, 328, 496, 563, 616, 724
Lsp1109I	GCAGC	6 cut(s)	112, 664, 781, 862, 865, 913
LweI	GCATC	3 cut(s)	475, 637, 673
MaeII	ACGT	6 cut(s)	51, 199, 265, 283, 538, 556
MaeIII	GTNAC	2 cut(s)	545, 1079
MalI	GATC	1 cut(s)	24
MboI	GATC	1 cut(s)	22
MboII	GAAGA	4 cut(s)	764, 785, 790, 880
MluCI	AATT	3 cut(s)	577, 600, 971
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	1 cut(s)	1011
MspA1I	CMGCKG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	621
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	1 cut(s)	621
MvnI	CGCG	1 cut(s)	11
NdeII	GATC	1 cut(s)	22
NlaIII	CATG	1 cut(s)	1076
NlaIV	GGNNCC	6 cut(s)	81, 120, 442, 618, 726, 1028
NmuCI	GTSAC	2 cut(s)	545, 1079
OliI	CACNNNNGTG	1 cut(s)	1011
PaeR7I	CTCGAG	1 cut(s)	1084
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	703
PdmI	GAANNNNTTC	1 cut(s)	17
PflFI	GACNNNGTC	1 cut(s)	50
PshAI	GACNNNNGTC	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	619
PspFI	CCCAGC	2 cut(s)	121, 895
PspGI	CCWGG	1 cut(s)	619
PspN4I	GGNNCC	6 cut(s)	81, 120, 442, 618, 726, 1028
PspPI	GGNCC	4 cut(s)	118, 241, 431, 1027
PspXI	VCTCGAGB	1 cut(s)	1084
PstNI	CAGNNNCTG	1 cut(s)	1127
PsyI	GACNNNGTC	1 cut(s)	50
PvuII	CAGCTG	1 cut(s)	125
RsaI	GTAC	1 cut(s)	374
RsaNI	GTAC	1 cut(s)	373
RseI	CAYNNNNRTG	1 cut(s)	1011
SaqAI	TTAA	1 cut(s)	552
Sau3AI	GATC	1 cut(s)	22
Sau96I	GGNCC	4 cut(s)	118, 241, 431, 1027
ScrFI	CCNGG	1 cut(s)	621
SfaNI	GCATC	3 cut(s)	475, 637, 673
SfcI	CTRYAG	1 cut(s)	1009
SfiI	GGCCNNNNNGGCC	1 cut(s)	1035
Sfr274I	CTCGAG	1 cut(s)	1084
SlaI	CTCGAG	1 cut(s)	1084
SmiMI	CAYNNNNRTG	1 cut(s)	1011
SmlI	CTYRAG	2 cut(s)	859, 1084
SmoI	CTYRAG	2 cut(s)	859, 1084
Sse9I	AATT	3 cut(s)	577, 600, 971
SsiI	CCGC	9 cut(s)	9, 65, 87, 90, 170, 216, 219, 255, 453
StyD4I	CCNGG	1 cut(s)	619
TaaI	ACNGT	4 cut(s)	479, 521, 1013, 1061
TaiI	ACGT	6 cut(s)	54, 202, 268, 286, 541, 559
TaqI	TCGA	3 cut(s)	21, 633, 1085
TasI	AATT	3 cut(s)	577, 600, 971
TauI	GCSGC	5 cut(s)	68, 89, 92, 219, 258
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	6 cut(s)	532, 598, 631, 804, 1018, 1066
TseFI	GTSAC	2 cut(s)	545, 1079
TseI	GCWGC	6 cut(s)	125, 677, 794, 850, 853, 926
Tsp45I	GTSAC	2 cut(s)	545, 1079
TspDTI	ATGAA	3 cut(s)	612, 894, 984
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	6 cut(s)	532, 598, 631, 804, 1018, 1066
Tth111I	GACNNNGTC	1 cut(s)	50
XagI	CCTNNNNNAGG	1 cut(s)	987
XapI	RAATTY	1 cut(s)	971
XhoI	CTCGAG	1 cut(s)	1084
XmnI	GAANNNNTTC	1 cut(s)	17
ZraI	GACGTC	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.