Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012646

Orthogroup ID

OG0001809

Physical Location & Seq

Genomic Coordinates Forward (+)

19878 .. 21435

Gene Structure 1558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12646g00030.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCGACCATGAACCCGTTTGATTTGTTGGGTGACGATGATGCTGAGGACCCGTCGCAGCTGATCGCAGCTCAGCAGCAGAAACTGGCTGCAGCGCCCAAGAAGGCTGTCCCTCCTCAGCCGATCAAGGCAGGGGCTCAGGTTCAAGAGACCAAGCCGGCTAAGCTGCCTTCCAAGCCTGCACCTCCTGCTCAGGCTGTGAGGGATGCAAAGAATGAAGCTGGTCGTGGGGGAGGTCGTGGAGGTGGACGTGGATATGGTTATAGCCGTGGACGTGGTGGTGGTGGTGGTTACAACCGTGAATCATCCAATTATGAGAACACATTCAGCAACAGTGGAGCTCCTCCTGGTCAAGGTGCTCTTGAAGATGCTGATGGGAAGGAAAGGCATGGCTATGGTGGACCTCGTGGGCCTTACCGTGGTGGTCGCCGTGGTGGTTTTGGAAATGCGGAAGTTGGTGATGGAGAACGCCGCAGGGTATTTGAACGCCGTAGTGGGACTGGACGCGGAAGTGAAGTCAAACGCGAAGGTTCTGGTCGTGGCAACTGGGGGTCACAAGCTGATGAACTTTCTGAGCTGACTGAAGAAGTTGCCAACGTAACTGAAAGGCATTTGGGTGATGAGAAGCCTGTGGAAGAGGGAGATGCAGCAGATGGCAAGAAGGATACCCCTGCTAATGAACCTGAAGAAAAAGAACCTGAGGATAAGGTGAGCGTCTTCTTTTCATTTTTTGTTATTGTGATTTATTGTAGGTCTGCATCTTCTTTCCCCCCAGAAGCCAATGCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HABP4_PAI-RBP1 Stm1_N

Protein Analysis

264

Amino Acids

27.78

Weight (kDa)

5.52

Isoelectric Point (pI)

48.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16830 AT4G16830 AT4G16830
fragaria_vesca	FvH4_5g20020 FvH4_5g20020 FvH4_5g20020 FvH4_7g10280
malus_domestica	MD02G1213500.v1.1 MD04G1050100.v1.1 MD06G1049800.v1.1 MD07G1109500.v1.1
prunus_persica	Prupe.2G132500_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1
pyrus_communis	pycom04g04410 pycom06g04220 pycom07g09400 pycom12646g00030
rosa_chinensis	RchiOBHm_Chr1g0348031 RchiOBHm_Chr7g0204831 RchiOBHm_Chr7g0204851
rosa_laevigata	RLG00000003428 RLG00000028697
rosa_multiflora	Rmu_sc0002180.1_g000016 Rmu_sc0002180.1_g000023 Rmu_ssc0000263.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252730 Rroxscaffold_4G00307320
rosa_rugosa	Rorug01G0190700 Rorug01G0190800 Rorug07G0086000 Rorug07G0086000 Rorug07G0086100
rosa_samantha	Rh1AG209300 Rh1BG174300 Rh1CG193700 Rh1DG204100 Rh7AG216500 Rh7AG216700 Rh7BG213600 Rh7CG230000 Rh7DG224100 Rh7DG224300
rosa_wichuraiana	Rw1G017440 Rw7G018760 Rw7G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	507, 525
AciI	CCGC	3 cut(s)	449, 472, 507
AcuI	CTGAAG	2 cut(s)	603, 705
AfiI	CCNNNNNNNGG	2 cut(s)	353, 419
AgsI	TTSAA	3 cut(s)	146, 365, 485
AjiI	CACGTC	2 cut(s)	251, 275
AjnI	CCWGG	1 cut(s)	346
AluBI	AGCT	7 cut(s)	61, 71, 166, 221, 341, 560, 577
AluI	AGCT	7 cut(s)	61, 71, 166, 221, 341, 560, 577
Alw21I	GWGCWC	2 cut(s)	343, 361
Alw26I	GTCTC	1 cut(s)	143
AlwNI	CAGNNNCTG	1 cut(s)	85
AoxI	GGCC	1 cut(s)	410
ApeKI	GCWGC	7 cut(s)	58, 68, 76, 89, 92, 166, 647
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	97
AspS9I	GGNCC	3 cut(s)	49, 401, 410
AsuHPI	GGTGA	4 cut(s)	44, 470, 629, 721
AvaII	GGWCC	2 cut(s)	49, 401
AxyI	CCTNAGG	1 cut(s)	699
BanII	GRGCYC	2 cut(s)	139, 343
BauI	CACGAG	1 cut(s)	405
BbsI	GAAGAC	1 cut(s)	709
Bbv12I	GWGCWC	2 cut(s)	343, 361
BbvCI	CCTCAGC	2 cut(s)	45, 117
BbvI	GCAGC	7 cut(s)	70, 76, 80, 88, 104, 153, 659
BccI	CCATC	3 cut(s)	368, 455, 647
BceAI	ACGGC	3 cut(s)	252, 414, 474
BciT130I	CCWGG	1 cut(s)	348
BciVI	GTATCC	1 cut(s)	658
BcoDI	GTCTC	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	98
BfuI	GTATCC	1 cut(s)	658
BisI	GCNGC	8 cut(s)	59, 69, 77, 90, 93, 167, 472, 648
BlpI	GCTNAGC	2 cut(s)	72, 162
BlsI	GCNGC	8 cut(s)	60, 70, 78, 91, 94, 168, 473, 649
Bme1390I	CCNGG	1 cut(s)	348
Bme18I	GGWCC	2 cut(s)	49, 401
BmgBI	CACGTC	2 cut(s)	251, 275
BmgT120I	GGNCC	3 cut(s)	49, 401, 410
BmiI	GGNNCC	1 cut(s)	51
BmrFI	CCNGG	1 cut(s)	348
BmrI	ACTGGG	1 cut(s)	556
BmsI	GCATC	5 cut(s)	31, 196, 358, 634, 767
BmuI	ACTGGG	1 cut(s)	556
BpiI	GAAGAC	1 cut(s)	709
Bpu10I	CCTNAGC	4 cut(s)	45, 117, 138, 192
Bpu1102I	GCTNAGC	2 cut(s)	72, 162
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	268, 418, 430
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 419
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	3 cut(s)	90, 505, 551
Bse21I	CCTNAGG	1 cut(s)	699
BseBI	CCWGG	1 cut(s)	348
BseDI	CCNNGG	3 cut(s)	268, 418, 430
BseGI	GGATG	2 cut(s)	211, 305
BseLI	CCNNNNNNNGG	2 cut(s)	353, 419
BseMII	CTCAG	7 cut(s)	36, 86, 131, 152, 206, 564, 690
BseNI	ACTGG	3 cut(s)	90, 505, 551
BseRI	GAGGAG	2 cut(s)	105, 333
BseXI	GCAGC	7 cut(s)	70, 76, 80, 88, 104, 153, 659
BsgI	GTGCAG	1 cut(s)	165
Bsh1236I	CGCG	2 cut(s)	507, 525
BshFI	GGCC	1 cut(s)	412
BsiHKAI	GWGCWC	2 cut(s)	343, 361
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	2 cut(s)	95, 511
BslI	CCNNNNNNNGG	2 cut(s)	353, 419
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	95, 511
BsnI	GGCC	1 cut(s)	412
Bso31I	GGTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	3 cut(s)	139, 343, 361
Bsp143I	GATC	2 cut(s)	63, 123
Bsp1720I	GCTNAGC	2 cut(s)	72, 162
BspACI	CCGC	3 cut(s)	449, 472, 507
BspANI	GGCC	1 cut(s)	412
BspCNI	CTCAG	7 cut(s)	37, 85, 130, 151, 205, 565, 691
BspFNI	CGCG	2 cut(s)	507, 525
BspLI	GGNNCC	1 cut(s)	51
BspMAI	CTGCAG	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	143
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	3 cut(s)	90, 505, 551
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	3 cut(s)	268, 418, 430
BssMI	GATC	2 cut(s)	63, 123
BssSI	CACGAG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	348
Bst4CI	ACNGT	3 cut(s)	299, 335, 419
Bst6I	CTCTTC	1 cut(s)	630
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	159, 180
BstDEI	CTNAG	8 cut(s)	45, 72, 117, 138, 162, 192, 573, 699
BstDSI	CCRYGG	3 cut(s)	268, 418, 430
BstENI	CCTNNNNNAGG	1 cut(s)	351
BstF5I	GGATG	2 cut(s)	211, 305
BstFNI	CGCG	2 cut(s)	507, 525
BstH2I	RGCGCY	1 cut(s)	98
BstHHI	GCGC	1 cut(s)	97
BstKTI	GATC	2 cut(s)	66, 126
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	63, 123
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 175, 188
BstNI	CCWGG	1 cut(s)	348
BstSCI	CCNGG	1 cut(s)	346
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	2 cut(s)	507, 525
BstV1I	GCAGC	7 cut(s)	70, 76, 80, 88, 104, 153, 659
BstV2I	GAAGAC	1 cut(s)	709
Bsu36I	CCTNAGG	1 cut(s)	699
BsuI	GTATCC	1 cut(s)	658
BsuRI	GGCC	1 cut(s)	412
BtgI	CCRYGG	3 cut(s)	268, 418, 430
BtrI	CACGTC	2 cut(s)	251, 275
BtsCI	GGATG	2 cut(s)	211, 305
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	2 cut(s)	159, 180
CaiI	CAGNNNCTG	1 cut(s)	85
CfoI	GCGC	1 cut(s)	97
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	49, 401, 410
CseI	GACGC	2 cut(s)	513, 703
CviAII	CATG	2 cut(s)	10, 389
DdeI	CTNAG	8 cut(s)	45, 72, 117, 138, 162, 192, 573, 699
DpnI	GATC	2 cut(s)	65, 125
DpnII	GATC	2 cut(s)	63, 123
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Ecl136II	GAGCTC	1 cut(s)	341
Eco24I	GRGCYC	2 cut(s)	139, 343
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	49, 401
Eco53kI	GAGCTC	1 cut(s)	341
Eco57I	CTGAAG	2 cut(s)	603, 705
Eco81I	CCTNAGG	1 cut(s)	699
EcoICRI	GAGCTC	1 cut(s)	341
EcoNI	CCTNNNNNAGG	1 cut(s)	351
EcoO109I	RGGNCCY	1 cut(s)	49
EcoRII	CCWGG	1 cut(s)	346
EcoT38I	GRGCYC	2 cut(s)	139, 343
FaeI	CATG	2 cut(s)	13, 392
FaiI	YATR	6 cut(s)	11, 258, 264, 315, 390, 396
FalI	AAGNNNNNCTT	2 cut(s)	345, 377
FaqI	GGGAC	2 cut(s)	95, 511
FatI	CATG	2 cut(s)	9, 388
Fnu4HI	GCNGC	8 cut(s)	59, 69, 77, 90, 93, 167, 472, 648
FokI	GGATG	2 cut(s)	218, 292
FriOI	GRGCYC	2 cut(s)	139, 343
Fsp4HI	GCNGC	8 cut(s)	59, 69, 77, 90, 93, 167, 472, 648
GlaI	GCGC	1 cut(s)	96
GluI	GCNGC	8 cut(s)	59, 69, 77, 90, 93, 167, 472, 648
HaeII	RGCGCY	1 cut(s)	98
HaeIII	GGCC	1 cut(s)	412
HapII	CCGG	1 cut(s)	158
HgaI	GACGC	2 cut(s)	513, 703
HhaI	GCGC	1 cut(s)	97
Hin1II	CATG	2 cut(s)	13, 392
Hin6I	GCGC	1 cut(s)	95
HinP1I	GCGC	1 cut(s)	95
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	4 cut(s)	44, 470, 629, 721
Hpy166II	GTNNAC	3 cut(s)	248, 272, 401
Hpy188I	TCNGA	2 cut(s)	574, 791
Hpy188III	TCNNGA	2 cut(s)	146, 362
Hpy8I	GTNNAC	3 cut(s)	248, 272, 401
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	5 cut(s)	97, 180, 373, 521, 655
HpyCH4III	ACNGT	3 cut(s)	299, 335, 419
HpyCH4IV	ACGT	3 cut(s)	250, 274, 597
HpyCH4V	TGCA	6 cut(s)	92, 182, 209, 647, 758, 785
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 175, 188
HpyF3I	CTNAG	8 cut(s)	45, 72, 117, 138, 162, 192, 573, 699
HpySE526I	ACGT	3 cut(s)	250, 274, 597
Hsp92II	CATG	2 cut(s)	13, 392
HspAI	GCGC	1 cut(s)	95
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
Kzo9I	GATC	2 cut(s)	63, 123
LmnI	GCTCC	2 cut(s)	338, 346
Lsp1109I	GCAGC	7 cut(s)	70, 76, 80, 88, 104, 153, 659
LweI	GCATC	5 cut(s)	31, 196, 358, 634, 767
MaeII	ACGT	3 cut(s)	250, 274, 597
MaeIII	GTNAC	4 cut(s)	32, 290, 552, 598
MalI	GATC	2 cut(s)	65, 125
MboI	GATC	2 cut(s)	63, 123
MboII	GAAGA	6 cut(s)	377, 596, 647, 698, 709, 753
MhlI	GDGCHC	3 cut(s)	139, 343, 361
MluCI	AATT	1 cut(s)	310
MroNI	GCCGGC	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	323
MslI	CAYNNNNRTG	2 cut(s)	393, 615
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	348
MvaI	CCWGG	1 cut(s)	348
MvnI	CGCG	2 cut(s)	507, 525
MwoI	GCNNNNNNNGC	3 cut(s)	163, 175, 188
NaeI	GCCGGC	1 cut(s)	159
NdeII	GATC	2 cut(s)	63, 123
NgoMIV	GCCGGC	1 cut(s)	157
NlaIII	CATG	2 cut(s)	13, 392
NlaIV	GGNNCC	1 cut(s)	51
NmuCI	GTSAC	2 cut(s)	32, 552
PdiI	GCCGGC	1 cut(s)	159
PdmI	GAANNNNTTC	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	8 cut(s)	60, 70, 78, 91, 94, 168, 473, 649
PpuMI	RGGWCCY	1 cut(s)	49
Psp124BI	GAGCTC	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	346
PspGI	CCWGG	1 cut(s)	346
PspN4I	GGNNCC	1 cut(s)	51
PspPI	GGNCC	3 cut(s)	49, 401, 410
PspPPI	RGGWCCY	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	85
PvuII	CAGCTG	1 cut(s)	61
RseI	CAYNNNNRTG	2 cut(s)	393, 615
SacI	GAGCTC	1 cut(s)	343
SatI	GCNGC	8 cut(s)	59, 69, 77, 90, 93, 167, 472, 648
Sau3AI	GATC	2 cut(s)	63, 123
Sau96I	GGNCC	3 cut(s)	49, 401, 410
ScrFI	CCNGG	1 cut(s)	348
SduI	GDGCHC	3 cut(s)	139, 343, 361
SfaNI	GCATC	5 cut(s)	31, 196, 358, 634, 767
SfcI	CTRYAG	1 cut(s)	90
SinI	GGWCC	2 cut(s)	49, 401
SmiMI	CAYNNNNRTG	2 cut(s)	393, 615
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	3 cut(s)	449, 472, 507
SstI	GAGCTC	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	346
TaaI	ACNGT	3 cut(s)	299, 335, 419
TaiI	ACGT	3 cut(s)	253, 277, 600
TasI	AATT	1 cut(s)	310
TauI	GCSGC	1 cut(s)	474
TfiI	GAWTC	1 cut(s)	302
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	2 cut(s)	32, 552
TseI	GCWGC	7 cut(s)	58, 68, 76, 89, 92, 166, 647
Tsp45I	GTSAC	2 cut(s)	32, 552
TspDTI	ATGAA	5 cut(s)	26, 231, 579, 693, 714
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	2 cut(s)	49, 401
XagI	CCTNNNNNAGG	1 cut(s)	351
XmnI	GAANNNNTTC	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.