RchiOBHm_Chr7g0204851

Plasminogen activator inhibitor 1 RNA-binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001809
Physical Location & Seq
Forward (+)
22566680 .. 22570518
3839 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18337

Sequence Viewer

Length: 1233 bp
ATGGTGAGAGGGCCTCTCGCTCTTCAGCTATGGATGTCTCTGTGCGTTTTGCTCGTTCTTCCTGCTCGATGCTTCTACATCCCTGCTGGCGTTGCGCCTCAGGATTCTCAAAACGTTCTTTTGGAAATTGCAATGGTGCTTCAAGATTGGGAGCTAAGAGAGGAAGCTATATTAGCAGAAATGGATGAAGCTCCTGATGAAGACTTTGAAACTGAGTTTCAAAATCTTGTTAATCAGCTTGATGATGTTGAACCTATCGATGGTAATGCTCATGATGATACAGTTGAACTTGAATACCTGGCTCTATTAAATCAGCCTGATGGTGCGGTGGATCTGCATCCCATTTCTAATGATCATCGTGCCCATTTAGAGGGAAACACTACTGGACAGTATTGTTGTGAAACCAAAGTGAGGGAAGGTGGAAGAGGAGGTGGCGGCCGAGGGATTGGTGGTGAGGGCTGTGGATTTGGTGGAGATAATCTGGATCGTAGCAATGATGAGAACACTAATGATTTCTCTGGTGGAGGGTACAGCAAACCTGAAGAGGGAGATAGGGATGTTTCTGAAAGGCGTGGTTTCTACGGGGGACCTCATGGTTCCTTGCGTGGTGGCTTTTGCAATGGAGAGGATGCAGAAGAGAAGTGTCCTTGGAGGATATTCGTCCTTCGCAGTGGCAGTGGAACTGGACATGGGGAGCTAGAGCCTGGCACTGAAGTTGAGAAAGATGTTGGTGCTGAGAAGCAGTTGGGAGAGAATGGAGCTGCTGATGCCACCAAGGAGAATCCTGTGGGTGAGCCAGAAGAGAAGGAGCCTGAGGAGAAGGAGAAGACTCTGGAAAAGTATGAGAAGGTTCTCGAAGAGAAGAGAAAGGCTCTGGCTGCACTGAAGACAGAGGCGAGAAATGTTGACTTGCACAAAGAGTTGAAGTCAATGCAGCAGCTCTCTCGCAAGAAGACAAATGATGAAATCTTTATCAAGCTGGGTTCTGAGAAGGATATAAGCAAGGAAGCTGCTGAGAAGGAGGAGAGAGCCAATAAGTCTGTTAGCATAAATGAATTCCTGAAGCCTGCTGAAGGGGAGGACCAGATGTTTTATGGTGGTCGTAATCGGAGTGGTGGAGGCCATGGTTCAAGAGGTGGACACAGTGGAGGAGAACATGGAGGTTACTTGAGCAATGTGCAAGCACCCTCCATTACAGATTCTGGGCACTTCCCATCCGTTGGTGGCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HABP4_PAI-RBP1 Stm1_N

Protein Analysis

410

Amino Acids

44.56

Weight (kDa)

4.71

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HABP4_PAI-RBP1 PF04774 239 - 301 6.3e-07 Hyaluronan / mRNA binding family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1220
AciI CCGC 2 cut(s) 326, 435
AclI AACGTT 1 cut(s) 114
AclWI GGATC 2 cut(s) 339, 492
AcoI YGGCCR 1 cut(s) 436
AcsI RAATTY 1 cut(s) 1055
AcuI CTGAAG 6 cut(s) 8, 561, 732, 905, 1082, 1092
AfaI GTAC 1 cut(s) 530
AfiI CCNNNNNNNGG 6 cut(s) 260, 370, 411, 545, 1073, 1220
AgsI TTSAA 8 cut(s) 143, 209, 221, 251, 287, 293, 925, 1131
AjnI CCWGG 2 cut(s) 297, 703
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 2 cut(s) 339, 492
AlwNI CAGNNNCTG 1 cut(s) 1202
AoxI GGCC 3 cut(s) 11, 436, 1120
ApeKI GCWGC 5 cut(s) 761, 878, 934, 937, 1010
ApoI RAATTY 1 cut(s) 1055
AspLEI GCGC 1 cut(s) 97
AspS9I GGNCC 3 cut(s) 11, 587, 1081
AsuHPI GGTGA 3 cut(s) 16, 464, 803
AvaII GGWCC 2 cut(s) 587, 1081
AxyI CCTNAGG 2 cut(s) 99, 813
BaeGI GKGCMC 2 cut(s) 364, 1209
BbsI GAAGAC 4 cut(s) 207, 833, 893, 959
BbvI GCAGC 5 cut(s) 748, 865, 946, 949, 997
BccI CCATC 3 cut(s) 254, 314, 1222
BcgI CGANNNNNNTGC 4 cut(s) 248, 282, 926, 960
BciT130I CCWGG 2 cut(s) 299, 705
BclI TGATCA 1 cut(s) 352
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 1 cut(s) 698
BisI GCNGC 6 cut(s) 436, 762, 879, 935, 938, 1011
BlsI GCNGC 6 cut(s) 437, 763, 880, 936, 939, 1012
Bme1390I CCNGG 2 cut(s) 299, 705
Bme18I GGWCC 2 cut(s) 587, 1081
BmgT120I GGNCC 3 cut(s) 11, 587, 1081
BmiI GGNNCC 3 cut(s) 588, 598, 810
BmrFI CCNGG 2 cut(s) 299, 705
BmsI GCATC 4 cut(s) 59, 346, 619, 757
BpiI GAAGAC 4 cut(s) 207, 833, 893, 959
BplI GAGNNNNNCTC 4 cut(s) 30, 32, 856, 888
BpuEI CTTGAG 1 cut(s) 1189
Bsa29I ATCGAT 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 336
BsaJI CCNNGG 4 cut(s) 439, 647, 774, 1123
Bsc4I CCNNNNNNNGG 6 cut(s) 260, 370, 411, 545, 1073, 1220
Bse1I ACTGG 2 cut(s) 388, 688
Bse21I CCTNAGG 2 cut(s) 99, 813
Bse3DI GCAATG 4 cut(s) 138, 499, 625, 1180
Bse8I GATNNNNATC 1 cut(s) 336
BseBI CCWGG 2 cut(s) 299, 705
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 4 cut(s) 439, 647, 774, 1123
BseGI GGATG 7 cut(s) 39, 78, 190, 337, 562, 634, 1214
BseJI GATNNNNATC 1 cut(s) 336
BseLI CCNNNNNNNGG 6 cut(s) 260, 370, 411, 545, 1073, 1220
BseMI GCAATG 4 cut(s) 138, 499, 625, 1180
BseMII CTCAG 6 cut(s) 113, 204, 726, 804, 978, 1005
BseNI ACTGG 2 cut(s) 388, 688
BseRI GAGGAG 4 cut(s) 441, 830, 1037, 1164
BseSI GKGCMC 2 cut(s) 364, 1209
BseX3I CGGCCG 1 cut(s) 436
BseXI GCAGC 5 cut(s) 748, 865, 946, 949, 997
BseYI CCCAGC 1 cut(s) 979
BsgI GTGCAG 1 cut(s) 864
Bsh1285I CGRYCG 1 cut(s) 439
BshFI GGCC 3 cut(s) 13, 438, 1122
BshVI ATCGAT 1 cut(s) 258
BsiEI CGRYCG 1 cut(s) 439
BslFI GGGAC 1 cut(s) 600
BslI CCNNNNNNNGG 6 cut(s) 260, 370, 411, 545, 1073, 1220
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 600
BsnI GGCC 3 cut(s) 13, 438, 1122
Bsp1286I GDGCHC 2 cut(s) 364, 1209
Bsp143I GATC 3 cut(s) 331, 352, 484
Bsp19I CCATGG 1 cut(s) 1123
BspACI CCGC 2 cut(s) 326, 435
BspANI GGCC 3 cut(s) 13, 438, 1122
BspCNI CTCAG 6 cut(s) 112, 205, 727, 805, 979, 1006
BspDI ATCGAT 1 cut(s) 258
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 3 cut(s) 588, 598, 810
BspPI GGATC 2 cut(s) 339, 492
BspQI GCTCTTC 1 cut(s) 27
BsrDI GCAATG 4 cut(s) 138, 499, 625, 1180
BsrI ACTGG 2 cut(s) 388, 688
BssECI CCNNGG 4 cut(s) 439, 647, 774, 1123
BssMI GATC 3 cut(s) 331, 352, 484
BssT1I CCWWGG 3 cut(s) 647, 774, 1123
Bst2UI CCWGG 2 cut(s) 299, 705
Bst4CI ACNGT 3 cut(s) 283, 390, 1145
Bst6I CTCTTC 7 cut(s) 27, 418, 537, 630, 795, 852, 857
BstC8I GCNNGC 3 cut(s) 88, 1068, 1182
BstDEI CTNAG 7 cut(s) 99, 155, 213, 735, 813, 987, 1014
BstDSI CCRYGG 1 cut(s) 1123
BstENI CCTNNNNNAGG 1 cut(s) 1071
BstF5I GGATG 7 cut(s) 39, 78, 190, 337, 562, 634, 1214
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 3 cut(s) 334, 355, 487
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 3 cut(s) 331, 352, 484
BstMCI CGRYCG 1 cut(s) 439
BstMWI GCNNNNNNNGC 4 cut(s) 92, 173, 767, 878
BstNI CCWGG 2 cut(s) 299, 705
BstSCI CCNGG 2 cut(s) 297, 703
BstSLI GKGCMC 2 cut(s) 364, 1209
BstV1I GCAGC 5 cut(s) 748, 865, 946, 949, 997
BstV2I GAAGAC 4 cut(s) 207, 833, 893, 959
BstX2I RGATCY 1 cut(s) 331
BstYI RGATCY 1 cut(s) 331
BstZI CGGCCG 1 cut(s) 436
Bsu15I ATCGAT 1 cut(s) 258
Bsu36I CCTNAGG 2 cut(s) 99, 813
BsuRI GGCC 3 cut(s) 13, 438, 1122
BsuTUI ATCGAT 1 cut(s) 258
BtgI CCRYGG 1 cut(s) 1123
BtsCI GGATG 7 cut(s) 39, 78, 190, 337, 562, 634, 1214
BtsI GCAGTG 2 cut(s) 676, 682
BtsIMutI CAGTG 5 cut(s) 676, 682, 708, 881, 1150
Cac8I GCNNGC 3 cut(s) 88, 1068, 1182
CaiI CAGNNNCTG 1 cut(s) 1202
CciI TCATGA 1 cut(s) 271
CfoI GCGC 1 cut(s) 97
Cfr13I GGNCC 3 cut(s) 11, 587, 1081
ClaI ATCGAT 1 cut(s) 258
Csp6I GTAC 1 cut(s) 529
CviAII CATG 5 cut(s) 272, 593, 689, 1124, 1157
CviQI GTAC 1 cut(s) 529
DdeI CTNAG 7 cut(s) 99, 155, 213, 735, 813, 987, 1014
DpnI GATC 3 cut(s) 333, 354, 486
DpnII GATC 3 cut(s) 331, 352, 484
EaeI YGGCCR 1 cut(s) 436
EagI CGGCCG 1 cut(s) 436
Eam1104I CTCTTC 7 cut(s) 27, 418, 537, 630, 795, 852, 857
EarI CTCTTC 7 cut(s) 27, 418, 537, 630, 795, 852, 857
EclXI CGGCCG 1 cut(s) 436
Eco130I CCWWGG 3 cut(s) 647, 774, 1123
Eco47I GGWCC 2 cut(s) 587, 1081
Eco52I CGGCCG 1 cut(s) 436
Eco57I CTGAAG 6 cut(s) 8, 561, 732, 905, 1082, 1092
Eco81I CCTNAGG 2 cut(s) 99, 813
EcoNI CCTNNNNNAGG 1 cut(s) 1071
EcoO109I RGGNCCY 2 cut(s) 11, 587
EcoRI GAATTC 1 cut(s) 1055
EcoRII CCWGG 2 cut(s) 297, 703
EcoT14I CCWWGG 3 cut(s) 647, 774, 1123
ErhI CCWWGG 3 cut(s) 647, 774, 1123
FaeI CATG 5 cut(s) 275, 596, 692, 1127, 1160
FaqI GGGAC 1 cut(s) 600
FatI CATG 5 cut(s) 271, 592, 688, 1123, 1156
FbaI TGATCA 1 cut(s) 352
Fnu4HI GCNGC 6 cut(s) 436, 762, 879, 935, 938, 1011
FokI GGATG 7 cut(s) 46, 65, 197, 324, 569, 641, 1201
Fsp4HI GCNGC 6 cut(s) 436, 762, 879, 935, 938, 1011
FspBI CTAG 1 cut(s) 698
GlaI GCGC 1 cut(s) 96
GluI GCNGC 6 cut(s) 436, 762, 879, 935, 938, 1011
GsaI CCCAGC 1 cut(s) 983
HaeIII GGCC 3 cut(s) 13, 438, 1122
HhaI GCGC 1 cut(s) 97
Hin1II CATG 5 cut(s) 275, 596, 692, 1127, 1160
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HincII GTYRAC 1 cut(s) 907
HindII GTYRAC 1 cut(s) 907
HinfI GANTC 4 cut(s) 104, 781, 829, 1199
HphI GGTGA 3 cut(s) 16, 464, 803
Hpy166II GTNNAC 2 cut(s) 907, 1139
Hpy188I TCNGA 3 cut(s) 565, 988, 1110
Hpy188III TCNNGA 9 cut(s) 101, 143, 194, 272, 482, 833, 854, 1060, 1131
Hpy8I GTNNAC 2 cut(s) 907, 1139
HpyAV CCTTC 8 cut(s) 410, 674, 799, 814, 841, 985, 1012, 1067
HpyCH4III ACNGT 3 cut(s) 283, 390, 1145
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 8 cut(s) 131, 337, 618, 632, 881, 913, 934, 1180
HpyF10VI GCNNNNNNNGC 4 cut(s) 92, 173, 767, 878
HpyF3I CTNAG 7 cut(s) 99, 155, 213, 735, 813, 987, 1014
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 5 cut(s) 275, 596, 692, 1127, 1160
HspAI GCGC 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 352
Kzo9I GATC 3 cut(s) 331, 352, 484
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 5 cut(s) 151, 196, 694, 758, 808
Lsp1109I GCAGC 5 cut(s) 748, 865, 946, 949, 997
LweI GCATC 4 cut(s) 59, 346, 619, 757
MaeI CTAG 1 cut(s) 698
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 1 cut(s) 1163
MalI GATC 3 cut(s) 333, 354, 486
MboI GATC 3 cut(s) 331, 352, 484
MflI RGATCY 1 cut(s) 331
MhlI GDGCHC 2 cut(s) 364, 1209
MluCI AATT 2 cut(s) 126, 1055
MlyI GAGTC 1 cut(s) 823
MseI TTAA 2 cut(s) 231, 308
MspR9I CCNGG 2 cut(s) 299, 705
MvaI CCWGG 2 cut(s) 299, 705
MwoI GCNNNNNNNGC 4 cut(s) 92, 173, 767, 878
NcoI CCATGG 1 cut(s) 1123
NdeII GATC 3 cut(s) 331, 352, 484
NlaIII CATG 5 cut(s) 275, 596, 692, 1127, 1160
NlaIV GGNNCC 3 cut(s) 588, 598, 810
NmeAIII GCCGAG 1 cut(s) 464
PagI TCATGA 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 27
PfeI GAWTC 3 cut(s) 104, 781, 1199
PflMI CCANNNNNTGG 1 cut(s) 1220
PkrI GCNGC 6 cut(s) 437, 763, 880, 936, 939, 1012
PleI GAGTC 1 cut(s) 823
PpsI GAGTC 1 cut(s) 823
PpuMI RGGWCCY 1 cut(s) 587
Psp1406I AACGTT 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 587
Psp6I CCWGG 2 cut(s) 297, 703
PspFI CCCAGC 1 cut(s) 979
PspGI CCWGG 2 cut(s) 297, 703
PspN4I GGNNCC 3 cut(s) 588, 598, 810
PspPI GGNCC 3 cut(s) 11, 587, 1081
PspPPI RGGWCCY 1 cut(s) 587
PstNI CAGNNNCTG 1 cut(s) 1202
PsuI RGATCY 1 cut(s) 331
RsaI GTAC 1 cut(s) 530
RsaNI GTAC 1 cut(s) 529
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 231, 308
SatI GCNGC 6 cut(s) 436, 762, 879, 935, 938, 1011
Sau3AI GATC 3 cut(s) 331, 352, 484
Sau96I GGNCC 3 cut(s) 11, 587, 1081
SchI GAGTC 1 cut(s) 823
ScrFI CCNGG 2 cut(s) 299, 705
SduI GDGCHC 2 cut(s) 364, 1209
SfaNI GCATC 4 cut(s) 59, 346, 619, 757
SinI GGWCC 2 cut(s) 587, 1081
SmlI CTYRAG 1 cut(s) 1168
SmoI CTYRAG 1 cut(s) 1168
Sse9I AATT 2 cut(s) 126, 1055
SsiI CCGC 2 cut(s) 326, 435
SspMI CTAG 1 cut(s) 698
StyD4I CCNGG 2 cut(s) 297, 703
StyI CCWWGG 3 cut(s) 647, 774, 1123
TaaI ACNGT 3 cut(s) 283, 390, 1145
TaiI ACGT 1 cut(s) 117
TaqI TCGA 3 cut(s) 67, 258, 855
TasI AATT 2 cut(s) 126, 1055
TauI GCSGC 1 cut(s) 438
TfiI GAWTC 3 cut(s) 104, 781, 1199
Tru1I TTAA 2 cut(s) 231, 308
Tru9I TTAA 2 cut(s) 231, 308
TscAI CASTG 5 cut(s) 676, 682, 715, 888, 1150
TseI GCWGC 5 cut(s) 761, 878, 934, 937, 1010
TspDTI ATGAA 4 cut(s) 201, 213, 978, 1068
TspGWI ACGGA 1 cut(s) 1207
TspRI CASTG 5 cut(s) 676, 682, 715, 888, 1150
Van91I CCANNNNNTGG 1 cut(s) 1220
VpaK11BI GGWCC 2 cut(s) 587, 1081
XagI CCTNNNNNAGG 1 cut(s) 1071
XapI RAATTY 1 cut(s) 1055
XcmI CCANNNNNNNNNTGG 1 cut(s) 1091
XspI CTAG 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.