Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0001809

Physical Location & Seq

Genomic Coordinates Reverse (-)

6767187 .. 6769119

Gene Structure 1933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0086100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGTGGTTTGCTGGTCGTGCGATTAGGGCTTCTTGCAGTACTAATTGTACTGGGAGTGGTTTGATTAGAGCTGCAACGGCGTCGTTTGCGAGGTACTTCTCTCGGGAACGCGCAGAGAATTTGAGGAAAATCAACCCTAAGGTCAGCTTTCCGGAGGCGAATTCAATTGCTCGGGATCTATACGACGTCGTCAAGCAACATGGACCTATCACCATCCCCAATACTTGGGCTCAAGCCAAGGAGTCTGGTGTTAGTGGATTGAATAGCAAAACACACATGAAGATAATGCTCAAATGGATGAGAGGAAGGAAGATGCTGAGGCTGTTTCCCAACCAAGTTGGCTCAAACAAAAAATTCTTGTTATGTACACTGCCTGAAGACCCTCATGTTACTGAGTTTAGAACTTCCACCGCAGTAAAAGTGTTATCTAAGAAGCCTTCCTCCAAGAGGAAAAAGCAAAAGCAAAAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HABP4_PAI-RBP1 Stm1_N

Protein Analysis

157

Amino Acids

17.78

Weight (kDa)

10.94

Isoelectric Point (pI)

34.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001809)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16830 AT4G16830 AT4G16830
fragaria_vesca	FvH4_5g20020 FvH4_5g20020 FvH4_5g20020 FvH4_7g10280
malus_domestica	MD02G1213500.v1.1 MD04G1050100.v1.1 MD06G1049800.v1.1 MD07G1109500.v1.1
prunus_persica	Prupe.2G132500_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1 Prupe.5G060200_v2.0.a1
pyrus_communis	pycom04g04410 pycom06g04220 pycom07g09400 pycom12646g00030
rosa_chinensis	RchiOBHm_Chr1g0348031 RchiOBHm_Chr7g0204831 RchiOBHm_Chr7g0204851
rosa_laevigata	RLG00000003428 RLG00000028697
rosa_multiflora	Rmu_sc0002180.1_g000016 Rmu_sc0002180.1_g000023 Rmu_ssc0000263.1_g000007
rosa_roxburghii	Rroxscaffold_3G00252730 Rroxscaffold_4G00307320
rosa_rugosa	Rorug01G0190700 Rorug01G0190800 Rorug07G0086000 Rorug07G0086000 Rorug07G0086100
rosa_samantha	Rh1AG209300 Rh1BG174300 Rh1CG193700 Rh1DG204100 Rh7AG216500 Rh7AG216700 Rh7BG213600 Rh7CG230000 Rh7DG224100 Rh7DG224300
rosa_wichuraiana	Rw1G017440 Rw7G018760 Rw7G018780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	189
AccB7I	CCANNNNNTGG	1 cut(s)	225
AccII	CGCG	1 cut(s)	111
AccIII	TCCGGA	1 cut(s)	151
AciI	CCGC	1 cut(s)	411
AclWI	GGATC	1 cut(s)	183
AcsI	RAATTY	3 cut(s)	118, 160, 353
AcuI	CTGAAG	1 cut(s)	396
AcyI	GRCGYC	2 cut(s)	80, 186
AfaI	GTAC	4 cut(s)	40, 49, 95, 367
AfiI	CCNNNNNNNGG	2 cut(s)	225, 447
AgsI	TTSAA	2 cut(s)	165, 262
AluBI	AGCT	2 cut(s)	71, 147
AluI	AGCT	2 cut(s)	71, 147
AlwI	GGATC	1 cut(s)	183
Ama87I	CYCGRG	2 cut(s)	102, 171
Aor13HI	TCCGGA	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	3 cut(s)	118, 160, 353
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	203
AsuHPI	GGTGA	1 cut(s)	202
AvaI	CYCGRG	2 cut(s)	102, 171
AvaII	GGWCC	1 cut(s)	203
AxyI	CCTNAGG	1 cut(s)	138
BanII	GRGCYC	1 cut(s)	232
BbsI	GAAGAC	1 cut(s)	384
BbvCI	CCTCAGC	1 cut(s)	317
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	93
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
BmcAI	AGTACT	1 cut(s)	40
Bme18I	GGWCC	1 cut(s)	203
BmeT110I	CYCGRG	2 cut(s)	102, 171
BmgT120I	GGNCC	1 cut(s)	203
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	303
BmuI	ACTGGG	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	384
Bpu10I	CCTNAGC	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	216
BsaHI	GRCGYC	2 cut(s)	80, 186
BsaJI	CCNNGG	1 cut(s)	237
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	2 cut(s)	225, 447
Bse1I	ACTGG	1 cut(s)	55
Bse21I	CCTNAGG	1 cut(s)	138
BseAI	TCCGGA	1 cut(s)	151
BseDI	CCNNGG	1 cut(s)	237
BseGI	GGATG	2 cut(s)	213, 303
BseLI	CCNNNNNNNGG	2 cut(s)	225, 447
BseMII	CTCAG	2 cut(s)	308, 384
BseNI	ACTGG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	58
Bsh1236I	CGCG	1 cut(s)	111
BsiHKCI	CYCGRG	2 cut(s)	102, 171
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	225, 447
BsoBI	CYCGRG	2 cut(s)	102, 171
Bsp1286I	GDGCHC	1 cut(s)	232
Bsp13I	TCCGGA	1 cut(s)	151
Bsp1407I	TGTACA	1 cut(s)	365
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	411
BspCNI	CTCAG	2 cut(s)	309, 385
BspEI	TCCGGA	1 cut(s)	151
BspFNI	CGCG	1 cut(s)	111
BspPI	GGATC	1 cut(s)	183
BsrGI	TGTACA	1 cut(s)	365
BsrI	ACTGG	1 cut(s)	55
BssECI	CCNNGG	1 cut(s)	237
BssMI	GATC	1 cut(s)	175
BssNI	GRCGYC	2 cut(s)	80, 186
BssT1I	CCWWGG	1 cut(s)	237
BstACI	GRCGYC	2 cut(s)	80, 186
BstAUI	TGTACA	1 cut(s)	365
BstDEI	CTNAG	4 cut(s)	138, 317, 393, 429
BstENI	CCTNNNNNAGG	1 cut(s)	445
BstF5I	GGATG	2 cut(s)	213, 303
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 26, 77, 86
BstUI	CGCG	1 cut(s)	111
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	384
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu36I	CCTNAGG	1 cut(s)	138
BtsCI	GGATG	2 cut(s)	213, 303
BtsI	GCAGTG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	368
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	203
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	4 cut(s)	39, 48, 94, 366
CviAII	CATG	3 cut(s)	200, 277, 386
CviJI	RGCY	8 cut(s)	29, 71, 147, 230, 236, 322, 342, 436
CviKI_1	RGCY	8 cut(s)	29, 71, 147, 230, 236, 322, 342, 436
CviQI	GTAC	4 cut(s)	39, 48, 94, 366
DdeI	CTNAG	4 cut(s)	138, 317, 393, 429
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	232
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	396
Eco81I	CCTNAGG	1 cut(s)	138
Eco88I	CYCGRG	2 cut(s)	102, 171
EcoNI	CCTNNNNNAGG	1 cut(s)	445
EcoRI	GAATTC	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	3 cut(s)	203, 280, 389
FaiI	YATR	5 cut(s)	181, 201, 278, 364, 387
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FatI	CATG	3 cut(s)	199, 276, 385
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	2 cut(s)	200, 310
FriOI	GRGCYC	1 cut(s)	232
Fsp4HI	GCNGC	1 cut(s)	72
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	1 cut(s)	72
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	1 cut(s)	113
Hin1I	GRCGYC	2 cut(s)	80, 186
Hin1II	CATG	3 cut(s)	203, 280, 389
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188III	TCNNGA	3 cut(s)	104, 152, 173
Hpy8I	GTNNAC	1 cut(s)	368
Hpy99I	CGWCG	3 cut(s)	85, 188, 191
HpyAV	CCTTC	2 cut(s)	300, 447
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	2 cut(s)	36, 74
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 26, 77, 86
HpyF3I	CTNAG	4 cut(s)	138, 317, 393, 429
HpySE526I	ACGT	1 cut(s)	186
Hsp92I	GRCGYC	2 cut(s)	80, 186
Hsp92II	CATG	3 cut(s)	203, 280, 389
HspAI	GCGC	1 cut(s)	111
Kpn2I	TCCGGA	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	175
LpnPI	CCDG	4 cut(s)	36, 165, 231, 387
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	1 cut(s)	303
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	3 cut(s)	292, 322, 389
MfeI	CAATTG	1 cut(s)	165
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	232
MluCI	AATT	5 cut(s)	43, 118, 160, 165, 353
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	8 cut(s)	84, 117, 148, 296, 312, 393, 441, 451
MroI	TCCGGA	1 cut(s)	151
MspI	CCGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	165
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	4 cut(s)	17, 26, 77, 86
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	3 cut(s)	203, 280, 389
PflFI	GACNNNGTC	1 cut(s)	188
PflMI	CCANNNNNTGG	1 cut(s)	225
PkrI	GCNGC	1 cut(s)	73
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	175
PsyI	GACNNNGTC	1 cut(s)	188
RsaI	GTAC	4 cut(s)	40, 49, 95, 367
RsaNI	GTAC	4 cut(s)	39, 48, 94, 366
SatI	GCNGC	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	203
ScaI	AGTACT	1 cut(s)	40
SchI	GAGTC	1 cut(s)	251
SduI	GDGCHC	1 cut(s)	232
SetI	ASST	7 cut(s)	73, 95, 144, 149, 189, 208, 473
SfaNI	GCATC	1 cut(s)	303
SinI	GGWCC	1 cut(s)	203
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	5 cut(s)	43, 118, 160, 165, 353
SsiI	CCGC	1 cut(s)	411
StyI	CCWWGG	1 cut(s)	237
TaiI	ACGT	1 cut(s)	189
TasI	AATT	5 cut(s)	43, 118, 160, 165, 353
TatI	WGTACW	3 cut(s)	38, 47, 365
TscAI	CASTG	1 cut(s)	375
TseI	GCWGC	1 cut(s)	71
TspDTI	ATGAA	1 cut(s)	293
TspRI	CASTG	1 cut(s)	375
Tth111I	GACNNNGTC	1 cut(s)	188
Van91I	CCANNNNNTGG	1 cut(s)	225
VpaK11BI	GGWCC	1 cut(s)	203
XagI	CCTNNNNNAGG	1 cut(s)	445
XapI	RAATTY	3 cut(s)	118, 160, 353
ZraI	GACGTC	1 cut(s)	187
ZrmI	AGTACT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.