AT4G18470

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001798
Physical Location & Seq
Forward (+)
10192909 .. 10195662
2754 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G18470.1

Sequence Viewer

Length: 1299 bp
ATGTCGAAAGAGACGAAGGGTAATAACAATACAAGCAGAGTGATGAGTGGCTATGGCGGTAGCTTGGAAGCTAACACCTTGGCTATGATTGATTCCACCGGAGCTAAAGACAGTCGCGACGCTAACGAAGATCGTTTGCAGTATCTGGAAGCTGTTCGTGCTGCTTCACTTGTACCCGAAAATGGAATTCCTCCAACCAACAAAATGTACCAAGCGATTTTCAGGATATTGAGATTTGGTAAAACATTGGAACTTATCACAGCAAGTTTCCAGCTTTTGACTCAATTACATCAGCGGTTTCCTTGGGTTTATGTATCTGATTCAGCTGATCAGTTGGACATCGTTGACGAGGCTTGGTCACCGTTTAATTTCGGGTCTGATGTTGATTCTGATGAAAAGGATTTATCAGTGAGAAGCTTATTTTTGCAACAGCTGATTCAGAACATGAACAAAAGAGTTAATGAGTCTGAGGAATCAGATTTAAAGATCCTTGGAAATATGTTTCTGTTCAAGTATCTTGCTCATGTTCTTAAGCTAGATTTCACACCCCGAAATCAAGTGTATGAAGAAACTATGAACTGGAGTCTCTTAAAGGAATCTTTTCTGAATCTACTTCTGGCTTCAAGAAAAGTGAATTTCAAACTTCTAATGAAAGATTATCTATCAACAATGTGTGCATCCATTGATGCTGATGAAAAGTCTATCAGTTTGGTAGAATTGCACAAGGACATGCTTACTGCTATGAAAGAACTTCTAGTAATGATCATGGAGCTTGATACATCAAAGAAGAAAGCTGACTTAGAAGGGATTACCTCTAGAGGAGATGGCGTAAGGACCCCTGCAATGGAGATCATTCTCGACGAGCTGACTTATGATGGATACTTGCTGTCAAAATTTCTTCAGGTTTTCGATGATCCTAAATGGAAGCTAGAGATTGTTCTCCAATACCTTACTAAATACATTCCTAAGCCTGTTGTACGTACCCGAAGAACAACTGTTCCTCAAGCAGAGGATTCGAAAACACTAAATGGGATCTTGAAGACGTTTTCAAATGGCACAAATCCAAAGAACATCACTAAAAAGATAGGACCTGACATTGTTCAGATCCTCATCGGCCATGCCTTTCTGGCTCGGCTTACATTCTCTGACCCTCACGAAGGAGACTCTATTTCAGAGATATGCAGTAGTATCATCTCTGCATTTACTAGTCTAAAGCGAGTAGATCAGAAAATCGAGATTCTACCGTTTGGGAAAGAAGTGTTGTTTACTGCAGGAATGGTACTCAAGGCAAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

432

Amino Acids

48.81

Weight (kDa)

5.9

Isoelectric Point (pI)

31.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 117
AciI CCGC 2 cut(s) 57, 295
AclWI GGATC 4 cut(s) 481, 908, 1040, 1099
AcoI YGGCCR 1 cut(s) 1114
AcsI RAATTY 3 cut(s) 186, 634, 893
AcuI CTGAAG 1 cut(s) 884
AfaI GTAC 5 cut(s) 174, 209, 978, 982, 1281
AfiI CCNNNNNNNGG 3 cut(s) 182, 844, 1157
AflII CTTAAG 1 cut(s) 530
AgsI TTSAA 5 cut(s) 511, 624, 640, 1039, 1050
AhlI ACTAGT 1 cut(s) 1205
AloI GAACNNNNNNTCC 2 cut(s) 982, 1014
Alw26I GTCTC 3 cut(s) 5, 590, 1155
AlwI GGATC 4 cut(s) 481, 908, 1040, 1099
AlwNI CAGNNNCTG 1 cut(s) 145
AoxI GGCC 1 cut(s) 1114
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 3 cut(s) 186, 634, 893
Asp700I GAANNNNTTC 2 cut(s) 153, 600
AspS9I GGNCC 2 cut(s) 834, 1088
AsuHPI GGTGA 1 cut(s) 351
AsuII TTCGAA 1 cut(s) 1016
AvaII GGWCC 2 cut(s) 834, 1088
BbsI GAAGAC 1 cut(s) 1046
BbvI GCAGC 1 cut(s) 148
BccI CCATC 2 cut(s) 818, 869
BcgI CGANNNNNNTGC 2 cut(s) 996, 1030
BciVI GTATCC 1 cut(s) 872
BclI TGATCA 2 cut(s) 328, 762
BcoDI GTCTC 3 cut(s) 5, 590, 1155
BcuI ACTAGT 1 cut(s) 1205
BfaI CTAG 5 cut(s) 536, 755, 816, 929, 1206
BfmI CTRYAG 1 cut(s) 1269
BfrI CTTAAG 1 cut(s) 530
BfuI GTATCC 1 cut(s) 872
BglI GCCNNNNNGGC 1 cut(s) 1127
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme18I GGWCC 2 cut(s) 834, 1088
BmgT120I GGNCC 2 cut(s) 834, 1088
BmiI GGNNCC 1 cut(s) 836
BmsI GCATC 2 cut(s) 676, 686
BpiI GAAGAC 1 cut(s) 1046
BpmI CTGGAG 1 cut(s) 601
Bpu10I CCTNAGC 1 cut(s) 966
Bpu14I TTCGAA 1 cut(s) 1016
BpuEI CTTGAG 2 cut(s) 987, 1268
BsaAI YACGTR 1 cut(s) 980
BsaBI GATNNNNATC 1 cut(s) 1109
BsaJI CCNNGG 3 cut(s) 78, 302, 490
BsaWI WCCGGW 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 813, 843
Bsc4I CCNNNNNNNGG 3 cut(s) 182, 844, 1157
Bse1I ACTGG 1 cut(s) 584
Bse3DI GCAATG 1 cut(s) 849
Bse8I GATNNNNATC 1 cut(s) 1109
BseDI CCNNGG 3 cut(s) 78, 302, 490
BseGI GGATG 1 cut(s) 677
BseJI GATNNNNATC 1 cut(s) 1109
BseLI CCNNNNNNNGG 3 cut(s) 182, 844, 1157
BseMI GCAATG 1 cut(s) 849
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 1 cut(s) 584
BseRI GAGGAG 1 cut(s) 834
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 117
BshFI GGCC 1 cut(s) 1116
BsiSI CCGG 1 cut(s) 99
BslI CCNNNNNNNGG 3 cut(s) 182, 844, 1157
BsmAI GTCTC 3 cut(s) 5, 590, 1155
BsmBI CGTCTC 1 cut(s) 5
BsnI GGCC 1 cut(s) 1116
Bsp119I TTCGAA 1 cut(s) 1016
Bsp143I GATC 9 cut(s) 130, 328, 486, 762, 849, 913, 1032, 1104, 1222
Bsp68I TCGCGA 1 cut(s) 117
BspACI CCGC 2 cut(s) 57, 295
BspANI GGCC 1 cut(s) 1116
BspCNI CTCAG 1 cut(s) 460
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 836
BspMAI CTGCAG 1 cut(s) 1273
BspPI GGATC 4 cut(s) 481, 908, 1040, 1099
BspT104I TTCGAA 1 cut(s) 1016
BspTI CTTAAG 1 cut(s) 530
BsrDI GCAATG 1 cut(s) 849
BsrI ACTGG 1 cut(s) 584
BssECI CCNNGG 3 cut(s) 78, 302, 490
BssMI GATC 9 cut(s) 130, 328, 486, 762, 849, 913, 1032, 1104, 1222
BssT1I CCWWGG 3 cut(s) 78, 302, 490
Bst4CI ACNGT 4 cut(s) 113, 363, 997, 1245
BstAFI CTTAAG 1 cut(s) 530
BstBAI YACGTR 1 cut(s) 980
BstBI TTCGAA 1 cut(s) 1016
BstDEI CTNAG 3 cut(s) 468, 799, 966
BstEII GGTNACC 1 cut(s) 357
BstENI CCTNNNNNAGG 1 cut(s) 1155
BstF5I GGATG 1 cut(s) 677
BstFNI CGCG 1 cut(s) 117
BstKTI GATC 9 cut(s) 133, 331, 489, 765, 852, 916, 1035, 1107, 1225
BstMAI GTCTC 3 cut(s) 5, 590, 1155
BstMBI GATC 9 cut(s) 130, 328, 486, 762, 849, 913, 1032, 1104, 1222
BstMWI GCNNNNNNNGC 2 cut(s) 158, 1127
BstNSI RCATGY 1 cut(s) 733
BstPI GGTNACC 1 cut(s) 357
BstSFI CTRYAG 1 cut(s) 1269
BstSNI TACGTA 1 cut(s) 980
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 1046
BstX2I RGATCY 3 cut(s) 486, 1032, 1104
BstYI RGATCY 3 cut(s) 486, 1032, 1104
BsuI GTATCC 1 cut(s) 872
BsuRI GGCC 1 cut(s) 1116
BtsCI GGATG 1 cut(s) 677
BtsIMutI CAGTG 1 cut(s) 414
BtuMI TCGCGA 1 cut(s) 117
CaiI CAGNNNCTG 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 834, 1088
CseI GACGC 1 cut(s) 128
Csp6I GTAC 5 cut(s) 173, 208, 977, 981, 1280
CviAII CATG 5 cut(s) 445, 524, 730, 766, 1118
CviQI GTAC 5 cut(s) 173, 208, 977, 981, 1280
DdeI CTNAG 3 cut(s) 468, 799, 966
DpnI GATC 9 cut(s) 132, 330, 488, 764, 851, 915, 1034, 1106, 1224
DpnII GATC 9 cut(s) 130, 328, 486, 762, 849, 913, 1032, 1104, 1222
DraI TTTAAA 1 cut(s) 483
EaeI YGGCCR 1 cut(s) 1114
Eco105I TACGTA 1 cut(s) 980
Eco130I CCWWGG 3 cut(s) 78, 302, 490
Eco47I GGWCC 2 cut(s) 834, 1088
Eco57I CTGAAG 1 cut(s) 884
Eco91I GGTNACC 1 cut(s) 357
EcoNI CCTNNNNNAGG 1 cut(s) 1155
EcoO109I RGGNCCY 2 cut(s) 834, 1088
EcoO65I GGTNACC 1 cut(s) 357
EcoRI GAATTC 1 cut(s) 186
EcoT14I CCWWGG 3 cut(s) 78, 302, 490
ErhI CCWWGG 3 cut(s) 78, 302, 490
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 5 cut(s) 448, 527, 733, 769, 1121
FatI CATG 5 cut(s) 444, 523, 729, 765, 1117
FbaI TGATCA 2 cut(s) 328, 762
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 664
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 5 cut(s) 536, 755, 816, 929, 1206
GluI GCNGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 601
HaeIII GGCC 1 cut(s) 1116
HapII CCGG 1 cut(s) 99
HgaI GACGC 1 cut(s) 128
Hin1II CATG 5 cut(s) 448, 527, 733, 769, 1121
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HindIII AAGCTT 2 cut(s) 415, 1293
HpaII CCGG 1 cut(s) 99
HphI GGTGA 1 cut(s) 351
Hpy166II GTNNAC 2 cut(s) 346, 1266
Hpy188III TCNNGA 9 cut(s) 116, 146, 223, 624, 816, 857, 1036, 1154, 1234
Hpy8I GTNNAC 2 cut(s) 346, 1266
Hpy99I CGWCG 2 cut(s) 122, 863
HpyAV CCTTC 3 cut(s) 10, 797, 1151
HpyCH4III ACNGT 4 cut(s) 113, 363, 997, 1245
HpyCH4IV ACGT 2 cut(s) 979, 1043
HpyCH4V TGCA 8 cut(s) 139, 427, 677, 721, 842, 1182, 1199, 1271
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 1127
HpyF3I CTNAG 3 cut(s) 468, 799, 966
HpySE526I ACGT 2 cut(s) 979, 1043
Hsp92II CATG 5 cut(s) 448, 527, 733, 769, 1121
Ksp22I TGATCA 2 cut(s) 328, 762
Kzo9I GATC 9 cut(s) 130, 328, 486, 762, 849, 913, 1032, 1104, 1222
LmnI GCTCC 2 cut(s) 101, 769
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 2 cut(s) 676, 686
MaeI CTAG 5 cut(s) 536, 755, 816, 929, 1206
MaeII ACGT 2 cut(s) 979, 1043
MaeIII GTNAC 1 cut(s) 357
MalI GATC 9 cut(s) 132, 330, 488, 764, 851, 915, 1034, 1106, 1224
MboI GATC 9 cut(s) 130, 328, 486, 762, 849, 913, 1032, 1104, 1222
MboII GAAGA 6 cut(s) 140, 578, 799, 890, 999, 1051
MflI RGATCY 3 cut(s) 486, 1032, 1104
MluCI AATT 6 cut(s) 186, 284, 367, 634, 716, 893
MlyI GAGTC 4 cut(s) 274, 473, 592, 1157
MmeI TCCRAC 2 cut(s) 218, 315
MnlI CCTC 9 cut(s) 201, 343, 463, 812, 823, 1003, 1011, 1118, 1161
MroXI GAANNNNTTC 2 cut(s) 153, 600
MseI TTAA 6 cut(s) 366, 459, 482, 531, 590, 1297
MspA1I CMGCKG 3 cut(s) 295, 326, 433
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 1 cut(s) 99
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 158, 1127
NdeII GATC 9 cut(s) 130, 328, 486, 762, 849, 913, 1032, 1104, 1222
NlaIII CATG 5 cut(s) 448, 527, 733, 769, 1121
NlaIV GGNNCC 1 cut(s) 836
NmeAIII GCCGAG 1 cut(s) 1111
NmuCI GTSAC 1 cut(s) 357
NruI TCGCGA 1 cut(s) 117
NspI RCATGY 1 cut(s) 733
NspV TTCGAA 1 cut(s) 1016
PcsI WCGNNNNNNNCGW 1 cut(s) 11
PdmI GAANNNNTTC 2 cut(s) 153, 600
PfeI GAWTC 9 cut(s) 92, 320, 386, 436, 473, 596, 607, 1013, 1237
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 4 cut(s) 274, 472, 591, 1157
PpsI GAGTC 4 cut(s) 274, 472, 591, 1157
Ppu21I YACGTR 1 cut(s) 980
PpuMI RGGWCCY 2 cut(s) 834, 1088
Psp5II RGGWCCY 2 cut(s) 834, 1088
PspEI GGTNACC 1 cut(s) 357
PspN4I GGNNCC 1 cut(s) 836
PspPI GGNCC 2 cut(s) 834, 1088
PspPPI RGGWCCY 2 cut(s) 834, 1088
PstI CTGCAG 1 cut(s) 1273
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 3 cut(s) 486, 1032, 1104
PvuII CAGCTG 2 cut(s) 326, 433
RruI TCGCGA 1 cut(s) 117
RsaI GTAC 5 cut(s) 174, 209, 978, 982, 1281
RsaNI GTAC 5 cut(s) 173, 208, 977, 981, 1280
SaqAI TTAA 6 cut(s) 366, 459, 482, 531, 590, 1297
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 9 cut(s) 130, 328, 486, 762, 849, 913, 1032, 1104, 1222
Sau96I GGNCC 2 cut(s) 834, 1088
SchI GAGTC 4 cut(s) 274, 473, 592, 1157
SfaNI GCATC 2 cut(s) 676, 686
SfcI CTRYAG 1 cut(s) 1269
SfuI TTCGAA 1 cut(s) 1016
SinI GGWCC 2 cut(s) 834, 1088
SmlI CTYRAG 3 cut(s) 530, 1002, 1283
SmoI CTYRAG 3 cut(s) 530, 1002, 1283
SnaBI TACGTA 1 cut(s) 980
SpeI ACTAGT 1 cut(s) 1205
Sse9I AATT 6 cut(s) 186, 284, 367, 634, 716, 893
SsiI CCGC 2 cut(s) 57, 295
SspMI CTAG 5 cut(s) 536, 755, 816, 929, 1206
StyI CCWWGG 3 cut(s) 78, 302, 490
TaaI ACNGT 4 cut(s) 113, 363, 997, 1245
TaiI ACGT 2 cut(s) 982, 1046
TaqI TCGA 5 cut(s) 5, 858, 909, 1016, 1233
TasI AATT 6 cut(s) 186, 284, 367, 634, 716, 893
TfiI GAWTC 9 cut(s) 92, 320, 386, 436, 473, 596, 607, 1013, 1237
Tru1I TTAA 6 cut(s) 366, 459, 482, 531, 590, 1297
Tru9I TTAA 6 cut(s) 366, 459, 482, 531, 590, 1297
TscAI CASTG 1 cut(s) 414
TseFI GTSAC 1 cut(s) 357
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 357
TspDTI ATGAA 7 cut(s) 408, 461, 579, 590, 665, 708, 758
TspRI CASTG 1 cut(s) 414
Vha464I CTTAAG 1 cut(s) 530
VpaK11BI GGWCC 2 cut(s) 834, 1088
XagI CCTNNNNNAGG 1 cut(s) 1155
XapI RAATTY 3 cut(s) 186, 634, 893
XbaI TCTAGA 1 cut(s) 815
XceI RCATGY 1 cut(s) 733
XmnI GAANNNNTTC 2 cut(s) 153, 600
XspI CTAG 5 cut(s) 536, 755, 816, 929, 1206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.