RchiOBHm_Chr3g0476981

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001798
Physical Location & Seq
Forward (+)
22888922 .. 22892995
4074 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44234

Sequence Viewer

Length: 1056 bp
ATGAGGCTTGATCGCCATTTGTTTTCAGCTCTGGAAGTTCTAGTAGCGAGAGGGAAGCTGCTAATAATCCTGGGGGATCAGTTGACTCCTCTTTTCCTCCTCCTTTTGGTTTTTCTTGACCTTCTTTCATTACAGTCCTTAGGGAACATGTTGCTGTTTCAATACCTAGTTAACGCTCTTGAAGGAGATTTTCAACCTCACAACTGTATCTATGCAGAAACTGCAAACTGGGTCCTTCTGAGAGTCTTTGCTCAACATGCTTTTGGTATCAAGAAAGATAAACTACAAAAACTTGATGAAGGATTGATTATGGAGCTTGACTTGTCGAAGAAGACAGCAGAAATGCAAGGGTCTACTACAACAGCAGATGGTGTCAGAACTCCTCTGCTGGAGATAGTTCTGGATGAGCTAACTTACGATGAGGATATTCTTGACTCATTTCTTCAGGATTTCAATGAACCTAAATGGAAGCTTGAGATAGTTGTGCAGTATTTGTGGAAATACAATGGTAAGATGAGCTTTCAAAGTTATAGAAAACCAGTTATGTGTCCAAATCACCCAATCAAGCTCCTTCTGCTTGTATTGTCATGGCATCCTTTATCTATGATCAAATTTCCTACAGATGATGCATCATTCAATGGAGCATTGAAGTGCTTTTCAAATGTCAACAGCACAAAAACCACCATAAAAAAGATTAGGCCAGAACTAGCTCAGTTGCTTTTAGCACACGGCCTTCAGAATATCCAAATGGATTTTACAATGAGGCTTGCAATGTTAAGTCGTTCAGTAGCAAGTGTTGTACTTCAACCCTCATCAGATATTGATAAAATCTTTTCTGTTTTTAATTTGGCTCATTTGTCCTTACCGTGTAAACAACATGTCGAAGGCACCTCTGCTTCCAGTGAAGAAACAAGTAACAGAGCCCTCATTGAAGTATCTGAGAATATAATATCTGCATTTAGAAATCTGAAGACTGCAGACAAGAAGATGGAGATTTTGCCACTTGGAAAAGAAGCATTGTTTATGGCAGCTACTATCATATCAGCACAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

39.59

Weight (kDa)

6.26

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 887
AccI GTMKAC 1 cut(s) 353
AclWI GGATC 1 cut(s) 84
AcsI RAATTY 1 cut(s) 611
AcuI CTGAAG 3 cut(s) 428, 719, 989
AfaI GTAC 1 cut(s) 801
AfiI CCNNNNNNNGG 1 cut(s) 106
AflIII ACRYGT 2 cut(s) 147, 877
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 9 cut(s) 29, 58, 316, 409, 472, 519, 568, 710, 1031
AluI AGCT 9 cut(s) 29, 58, 316, 409, 472, 519, 568, 710, 1031
AlwI GGATC 1 cut(s) 84
AlwNI CAGNNNCTG 1 cut(s) 221
AoxI GGCC 2 cut(s) 698, 730
ApeKI GCWGC 2 cut(s) 58, 1028
ApoI RAATTY 1 cut(s) 611
AspS9I GGNCC 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 548
AvaII GGWCC 1 cut(s) 232
AxyI CCTNAGG 1 cut(s) 139
BaeI ACNNNNGTAYC 2 cut(s) 190, 223
BanI GGYRCC 1 cut(s) 887
BanII GRGCYC 1 cut(s) 925
BbsI GAAGAC 2 cut(s) 338, 977
BbvI GCAGC 2 cut(s) 45, 1040
BccI CCATC 2 cut(s) 362, 982
BceAI ACGGC 1 cut(s) 745
BciT130I CCWGG 1 cut(s) 71
BclI TGATCA 1 cut(s) 606
BfaI CTAG 3 cut(s) 41, 167, 707
BfmI CTRYAG 2 cut(s) 618, 975
BisI GCNGC 2 cut(s) 59, 1029
BlsI GCNGC 2 cut(s) 60, 1030
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 233, 889
BmrFI CCNGG 1 cut(s) 71
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 3 cut(s) 601, 616, 638
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 2 cut(s) 338, 977
BpmI CTGGAG 1 cut(s) 410
BpuEI CTTGAG 1 cut(s) 494
BsaJI CCNNGG 1 cut(s) 70
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 3 cut(s) 233, 539, 900
Bse21I CCTNAGG 1 cut(s) 139
Bse3DI GCAATG 1 cut(s) 777
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 1 cut(s) 70
BseGI GGATG 2 cut(s) 409, 592
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 3 cut(s) 230, 725, 930
BseNI ACTGG 3 cut(s) 233, 539, 900
BseRI GAGGAG 3 cut(s) 78, 89, 372
BseXI GCAGC 2 cut(s) 45, 1040
BsgI GTGCAG 1 cut(s) 506
BshFI GGCC 2 cut(s) 700, 732
BshNI GGYRCC 1 cut(s) 887
BslI CCNNNNNNNGG 1 cut(s) 106
BsnI GGCC 2 cut(s) 700, 732
Bsp1286I GDGCHC 1 cut(s) 925
Bsp143I GATC 3 cut(s) 10, 76, 606
BspANI GGCC 2 cut(s) 700, 732
BspCNI CTCAG 3 cut(s) 231, 724, 931
BspLI GGNNCC 2 cut(s) 233, 889
BspMAI CTGCAG 1 cut(s) 979
BspPI GGATC 1 cut(s) 84
BspT107I GGYRCC 1 cut(s) 887
BsrDI GCAATG 1 cut(s) 777
BsrI ACTGG 3 cut(s) 233, 539, 900
BssECI CCNNGG 1 cut(s) 70
BssMI GATC 3 cut(s) 10, 76, 606
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 4 cut(s) 135, 206, 867, 1050
BstAPI GCANNNNNTGC 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 768
BstDEI CTNAG 4 cut(s) 139, 239, 711, 939
BstF5I GGATG 2 cut(s) 409, 592
BstKTI GATC 3 cut(s) 13, 79, 609
BstMBI GATC 3 cut(s) 10, 76, 606
BstMWI GCNNNNNNNGC 3 cut(s) 221, 257, 574
BstNI CCWGG 1 cut(s) 71
BstNSI RCATGY 3 cut(s) 151, 260, 881
BstSCI CCNGG 1 cut(s) 69
BstSFI CTRYAG 2 cut(s) 618, 975
BstV1I GCAGC 2 cut(s) 45, 1040
BstV2I GAAGAC 2 cut(s) 338, 977
Bsu36I CCTNAGG 1 cut(s) 139
BsuRI GGCC 2 cut(s) 700, 732
BtsCI GGATG 2 cut(s) 409, 592
BtsIMutI CAGTG 1 cut(s) 907
Cac8I GCNNGC 1 cut(s) 768
CaiI CAGNNNCTG 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 800
CviAII CATG 4 cut(s) 148, 257, 588, 878
CviQI GTAC 1 cut(s) 800
DdeI CTNAG 4 cut(s) 139, 239, 711, 939
DpnI GATC 3 cut(s) 12, 78, 608
DpnII GATC 3 cut(s) 10, 76, 606
Eco24I GRGCYC 1 cut(s) 925
Eco47I GGWCC 1 cut(s) 232
Eco57I CTGAAG 3 cut(s) 428, 719, 989
Eco81I CCTNAGG 1 cut(s) 139
EcoO109I RGGNCCY 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 69
EcoT22I ATGCAT 1 cut(s) 631
EcoT38I GRGCYC 1 cut(s) 925
FaeI CATG 4 cut(s) 151, 260, 591, 881
FalI AAGNNNNNCTT 2 cut(s) 503, 535
FatI CATG 4 cut(s) 147, 256, 587, 877
FbaI TGATCA 1 cut(s) 606
FblI GTMKAC 1 cut(s) 353
Fnu4HI GCNGC 2 cut(s) 59, 1029
FokI GGATG 2 cut(s) 416, 579
FriOI GRGCYC 1 cut(s) 925
Fsp4HI GCNGC 2 cut(s) 59, 1029
FspBI CTAG 3 cut(s) 41, 167, 707
GluI GCNGC 2 cut(s) 59, 1029
GsuI CTGGAG 1 cut(s) 410
HaeIII GGCC 2 cut(s) 700, 732
Hin1II CATG 4 cut(s) 151, 260, 591, 881
HincII GTYRAC 3 cut(s) 84, 172, 667
HindII GTYRAC 3 cut(s) 84, 172, 667
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 3 cut(s) 85, 243, 434
HpaI GTTAAC 1 cut(s) 172
HphI GGTGA 1 cut(s) 548
Hpy166II GTNNAC 5 cut(s) 84, 172, 354, 667, 872
Hpy188I TCNGA 6 cut(s) 240, 377, 738, 817, 940, 969
Hpy188III TCNNGA 7 cut(s) 32, 116, 179, 271, 401, 431, 446
Hpy8I GTNNAC 5 cut(s) 84, 172, 354, 667, 872
HpyAV CCTTC 7 cut(s) 131, 176, 245, 293, 581, 743, 878
HpyCH4III ACNGT 4 cut(s) 135, 206, 867, 1050
HpyCH4V TGCA 8 cut(s) 215, 224, 346, 487, 629, 770, 956, 977
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 257, 574
HpyF3I CTNAG 4 cut(s) 139, 239, 711, 939
Hsp92II CATG 4 cut(s) 151, 260, 591, 881
Ksp22I TGATCA 1 cut(s) 606
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 10, 76, 606
LmnI GCTCC 3 cut(s) 313, 573, 641
Lsp1109I GCAGC 2 cut(s) 45, 1040
LweI GCATC 3 cut(s) 601, 616, 638
MaeI CTAG 3 cut(s) 41, 167, 707
MaeIII GTNAC 1 cut(s) 914
MalI GATC 3 cut(s) 12, 78, 608
MboI GATC 3 cut(s) 10, 76, 606
MboII GAAGA 6 cut(s) 340, 343, 434, 917, 982, 997
MhlI GDGCHC 1 cut(s) 925
MluCI AATT 2 cut(s) 611, 844
MlyI GAGTC 3 cut(s) 79, 252, 428
Mph1103I ATGCAT 1 cut(s) 631
MseI TTAA 3 cut(s) 171, 776, 843
MslI CAYNNNNRTG 1 cut(s) 649
MspR9I CCNGG 1 cut(s) 71
MvaI CCWGG 1 cut(s) 71
MwoI GCNNNNNNNGC 3 cut(s) 221, 257, 574
NdeII GATC 3 cut(s) 10, 76, 606
NlaIII CATG 4 cut(s) 151, 260, 591, 881
NlaIV GGNNCC 2 cut(s) 233, 889
NsiI ATGCAT 1 cut(s) 631
NspI RCATGY 3 cut(s) 151, 260, 881
PciI ACATGT 2 cut(s) 147, 877
PkrI GCNGC 2 cut(s) 60, 1030
PleI GAGTC 3 cut(s) 79, 251, 428
PpsI GAGTC 3 cut(s) 79, 251, 428
PpuMI RGGWCCY 1 cut(s) 232
PscI ACATGT 2 cut(s) 147, 877
Psp5II RGGWCCY 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 69
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 2 cut(s) 233, 889
PspPI GGNCC 1 cut(s) 232
PspPPI RGGWCCY 1 cut(s) 232
PstI CTGCAG 1 cut(s) 979
PstNI CAGNNNCTG 1 cut(s) 221
RsaI GTAC 1 cut(s) 801
RsaNI GTAC 1 cut(s) 800
RseI CAYNNNNRTG 1 cut(s) 649
SaqAI TTAA 3 cut(s) 171, 776, 843
SatI GCNGC 2 cut(s) 59, 1029
Sau3AI GATC 3 cut(s) 10, 76, 606
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 3 cut(s) 79, 252, 428
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 1 cut(s) 925
SfaNI GCATC 3 cut(s) 601, 616, 638
SfcI CTRYAG 2 cut(s) 618, 975
SinI GGWCC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 649
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 2 cut(s) 611, 844
SspMI CTAG 3 cut(s) 41, 167, 707
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 4 cut(s) 135, 206, 867, 1050
TaqI TCGA 2 cut(s) 326, 882
TasI AATT 2 cut(s) 611, 844
TatI WGTACW 1 cut(s) 799
Tru1I TTAA 3 cut(s) 171, 776, 843
Tru9I TTAA 3 cut(s) 171, 776, 843
TscAI CASTG 1 cut(s) 907
TseI GCWGC 2 cut(s) 58, 1028
TspDTI ATGAA 3 cut(s) 117, 312, 471
TspRI CASTG 1 cut(s) 907
VpaK11BI GGWCC 1 cut(s) 232
XapI RAATTY 1 cut(s) 611
XceI RCATGY 3 cut(s) 151, 260, 881
XmiI GTMKAC 1 cut(s) 353
XspI CTAG 3 cut(s) 41, 167, 707
Zsp2I ATGCAT 1 cut(s) 631
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.