Rroxscaffold_6G00404900

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001798
Physical Location & Seq
Reverse (-)
27394340 .. 27399111
4772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404900.1

Sequence Viewer

Length: 1116 bp
ATGGAGAACCCTAGCAGTAAGAGAACCACAGCCGGAGCCCTAGAAGAGAACATCTTGGCCAAAGCCGACGACACTCACTACGCCAACGACTACCGTGAAGCCCTATTCCCCCTTTTCGATTTCGTTTGCTTATCTTTACTGAATCTGATCTCCGAGGGAACTGCTTTCCTCGATGCCTGTTTCCCTCGGGTGCATATGTCTGTTGTTGATGAAATGAAATCGTCCAGTAAAGGCATGTTAATCGTGGAGAATGAGGCTTGGTCGCCATTTGTTTTCAGCTCTGAAAGTACTAGTAGTGAGAGGGAAGCTGCTAATAACCCTGGGGGATCAGTTGACTCCTCTGGTTTCCAATGTTTGGTAGAAGACTTTGCTGAACCAAACTTCCAAGCCTCAGAAACAAAGTTAACGCTCTTGAAGGAGATTTTCAACCTCGCAACTGTATCTATGCAGGTATCAAGAAAGATAAACTACAAAAACTTGATGAAGGATTGGTTGGCCATTATGTGTAAGCTGTATCAAACCAATGCTGGATTCACTGATGATCTGATAAGTTCAGAGAAGTCTATGGCACAACCAGCCGAAAATTTTGATACTGCTGCTACAATTGCTTTGCTTCAGATAGGAAAGAATACCTGTATAGCCTTGCAGAAGTTTCTGATACTGATTATGGAGCTTGACTTCTCGAAGAAGACAGCAGAAATGCAAGGGTCTACTACAACAGCAGATGGTGTCAGAACTCCTCTGCTGGAGATAGTTCTGGATGAGCTAACTTACGATAAGGATATTCTTGACTCATTTCTTCAGGTTCATATCTCTTTCCATTTTCCATTTATGGTTTGTTCTGTTTCTGTATTTGTATATGCTCTGAAGCATATGTTCCAGTCAGTTTTCAATGAACCTAAATGGAAGCTTGAGATAGTTGTGCAGTATTTGTGGAAATACATTGGCACCTCTGCTTCCAGTGAAGAAACAAGTAACAGCTCCCTCATTGAAGTATCTGAGAATATAATATCTGCATTTAGAAATCTGAAGACTGCAGACAAGAAAATGGAGATTTTGCCACTTGGAAAAGCAGCATTGTTTATGGCAGCTACTATCATATCAGCACAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

371

Amino Acids

41.31

Weight (kDa)

4.81

Isoelectric Point (pI)

43.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 439
AccB1I GGYRCC 1 cut(s) 947
AccB7I CCANNNNNTGG 1 cut(s) 355
AccI GTMKAC 1 cut(s) 710
AclWI GGATC 1 cut(s) 334
AcoI YGGCCR 2 cut(s) 57, 495
AcsI RAATTY 1 cut(s) 583
AcuI CTGAAG 4 cut(s) 599, 785, 887, 1049
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 355
AgsI TTSAA 4 cut(s) 415, 427, 892, 992
AhlI ACTAGT 1 cut(s) 290
AjnI CCWGG 1 cut(s) 319
AjuI GAANNNNNNNTTGG 4 cut(s) 476, 508, 515, 547
AloI GAACNNNNNNTCC 2 cut(s) 366, 398
AluBI AGCT 8 cut(s) 279, 308, 511, 673, 766, 910, 981, 1091
AluI AGCT 8 cut(s) 279, 308, 511, 673, 766, 910, 981, 1091
AlwI GGATC 1 cut(s) 334
Ama87I CYCGRG 1 cut(s) 186
AoxI GGCC 2 cut(s) 57, 495
ApeKI GCWGC 4 cut(s) 308, 596, 1073, 1088
ApoI RAATTY 1 cut(s) 583
AvaI CYCGRG 1 cut(s) 186
BalI TGGCCA 2 cut(s) 59, 497
BanI GGYRCC 1 cut(s) 947
BanII GRGCYC 1 cut(s) 40
BbsI GAAGAC 3 cut(s) 369, 695, 1037
BbvI GCAGC 4 cut(s) 295, 583, 1085, 1100
BccI CCATC 1 cut(s) 719
BcgI CGANNNNNNTGC 4 cut(s) 143, 177, 223, 257
BciT130I CCWGG 1 cut(s) 321
BcuI ACTAGT 1 cut(s) 290
BfaI CTAG 3 cut(s) 12, 41, 291
BfmI CTRYAG 1 cut(s) 1035
BfuAI ACCTGC 1 cut(s) 439
BisI GCNGC 4 cut(s) 309, 597, 1074, 1089
BlsI GCNGC 4 cut(s) 310, 598, 1075, 1090
BmcAI AGTACT 1 cut(s) 289
Bme1390I CCNGG 1 cut(s) 321
BmeT110I CYCGRG 1 cut(s) 186
BmiI GGNNCC 2 cut(s) 37, 949
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 163
BpiI GAAGAC 3 cut(s) 369, 695, 1037
BpmI CTGGAG 1 cut(s) 767
BpuEI CTTGAG 1 cut(s) 932
BsaJI CCNNGG 4 cut(s) 153, 185, 319, 320
Bsc4I CCNNNNNNNGG 1 cut(s) 355
Bse1I ACTGG 3 cut(s) 225, 880, 960
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 4 cut(s) 153, 185, 319, 320
BseGI GGATG 1 cut(s) 766
BseLI CCNNNNNNNGG 1 cut(s) 355
BseMII CTCAG 2 cut(s) 405, 990
BseNI ACTGG 3 cut(s) 225, 880, 960
BseRI GAGGAG 2 cut(s) 328, 729
BseXI GCAGC 4 cut(s) 295, 583, 1085, 1100
BsgI GTGCAG 1 cut(s) 944
BshFI GGCC 2 cut(s) 59, 497
BshNI GGYRCC 1 cut(s) 947
BsiHKCI CYCGRG 1 cut(s) 186
BsiSI CCGG 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 355
BsnI GGCC 2 cut(s) 59, 497
BsoBI CYCGRG 1 cut(s) 186
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 147, 326, 541
BspANI GGCC 2 cut(s) 59, 497
BspCNI CTCAG 2 cut(s) 404, 991
BspLI GGNNCC 2 cut(s) 37, 949
BspMAI CTGCAG 1 cut(s) 1039
BspMI ACCTGC 1 cut(s) 439
BspPI GGATC 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 947
BsrI ACTGG 3 cut(s) 225, 880, 960
BssECI CCNNGG 4 cut(s) 153, 185, 319, 320
BssMI GATC 3 cut(s) 147, 326, 541
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 3 cut(s) 95, 439, 1110
Bst6I CTCTTC 1 cut(s) 39
BstDEI CTNAG 2 cut(s) 391, 999
BstF5I GGATG 1 cut(s) 766
BstKTI GATC 3 cut(s) 150, 329, 544
BstMBI GATC 3 cut(s) 147, 326, 541
BstMWI GCNNNNNNNGC 2 cut(s) 575, 605
BstNI CCWGG 1 cut(s) 321
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 319
BstSFI CTRYAG 1 cut(s) 1035
BstV1I GCAGC 4 cut(s) 295, 583, 1085, 1100
BstV2I GAAGAC 3 cut(s) 369, 695, 1037
BsuRI GGCC 2 cut(s) 59, 497
BtsCI GGATG 1 cut(s) 766
BtsIMutI CAGTG 2 cut(s) 534, 967
BveI ACCTGC 1 cut(s) 439
Csp6I GTAC 1 cut(s) 288
CviAII CATG 1 cut(s) 235
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 2 cut(s) 391, 999
DpnI GATC 3 cut(s) 149, 328, 543
DpnII GATC 3 cut(s) 147, 326, 541
EaeI YGGCCR 2 cut(s) 57, 495
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco24I GRGCYC 1 cut(s) 40
Eco57I CTGAAG 4 cut(s) 599, 785, 887, 1049
Eco88I CYCGRG 1 cut(s) 186
EcoRII CCWGG 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 40
FaeI CATG 1 cut(s) 238
FatI CATG 1 cut(s) 234
FauNDI CATATG 2 cut(s) 195, 873
FblI GTMKAC 1 cut(s) 710
Fnu4HI GCNGC 4 cut(s) 309, 597, 1074, 1089
FokI GGATG 1 cut(s) 773
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 4 cut(s) 309, 597, 1074, 1089
FspBI CTAG 3 cut(s) 12, 41, 291
GluI GCNGC 4 cut(s) 309, 597, 1074, 1089
GsuI CTGGAG 1 cut(s) 767
HaeIII GGCC 2 cut(s) 59, 497
HapII CCGG 1 cut(s) 33
Hin1II CATG 1 cut(s) 238
HincII GTYRAC 2 cut(s) 334, 405
HindII GTYRAC 2 cut(s) 334, 405
HindIII AAGCTT 1 cut(s) 908
HinfI GANTC 4 cut(s) 142, 335, 531, 791
HpaI GTTAAC 1 cut(s) 405
HpaII CCGG 1 cut(s) 33
Hpy166II GTNNAC 3 cut(s) 334, 405, 711
Hpy188III TCNNGA 5 cut(s) 412, 456, 682, 758, 788
Hpy8I GTNNAC 3 cut(s) 334, 405, 711
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 409, 478
HpyCH4III ACNGT 3 cut(s) 95, 439, 1110
HpyCH4V TGCA 7 cut(s) 193, 448, 646, 703, 925, 1016, 1037
HpyF10VI GCNNNNNNNGC 2 cut(s) 575, 605
HpyF3I CTNAG 2 cut(s) 391, 999
Hsp92II CATG 1 cut(s) 238
KspAI GTTAAC 1 cut(s) 405
Kzo9I GATC 3 cut(s) 147, 326, 541
LmnI GCTCC 3 cut(s) 35, 670, 986
Lsp1109I GCAGC 4 cut(s) 295, 583, 1085, 1100
LweI GCATC 1 cut(s) 163
MaeI CTAG 3 cut(s) 12, 41, 291
MaeIII GTNAC 1 cut(s) 974
MalI GATC 3 cut(s) 149, 328, 543
MboI GATC 3 cut(s) 147, 326, 541
MboII GAAGA 7 cut(s) 56, 374, 697, 700, 791, 977, 1042
MfeI CAATTG 1 cut(s) 603
MhlI GDGCHC 1 cut(s) 40
MlsI TGGCCA 2 cut(s) 59, 497
MluCI AATT 2 cut(s) 583, 603
MluNI TGGCCA 2 cut(s) 59, 497
MlyI GAGTC 2 cut(s) 329, 785
Mox20I TGGCCA 2 cut(s) 59, 497
MscI TGGCCA 2 cut(s) 59, 497
MseI TTAA 2 cut(s) 239, 404
Msp20I TGGCCA 2 cut(s) 59, 497
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 321
MunI CAATTG 1 cut(s) 603
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 2 cut(s) 575, 605
NdeI CATATG 2 cut(s) 195, 873
NdeII GATC 3 cut(s) 147, 326, 541
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 2 cut(s) 37, 949
NspI RCATGY 1 cut(s) 238
PasI CCCWGGG 1 cut(s) 320
PfeI GAWTC 2 cut(s) 142, 531
PflMI CCANNNNNTGG 1 cut(s) 355
PkrI GCNGC 4 cut(s) 310, 598, 1075, 1090
PleI GAGTC 2 cut(s) 329, 785
PpsI GAGTC 2 cut(s) 329, 785
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 2 cut(s) 37, 949
PstI CTGCAG 1 cut(s) 1039
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SaqAI TTAA 2 cut(s) 239, 404
SatI GCNGC 4 cut(s) 309, 597, 1074, 1089
Sau3AI GATC 3 cut(s) 147, 326, 541
ScaI AGTACT 1 cut(s) 289
SchI GAGTC 2 cut(s) 329, 785
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 1 cut(s) 163
SfcI CTRYAG 1 cut(s) 1035
SmlI CTYRAG 1 cut(s) 911
SmoI CTYRAG 1 cut(s) 911
SpeI ACTAGT 1 cut(s) 290
Sse9I AATT 2 cut(s) 583, 603
SspMI CTAG 3 cut(s) 12, 41, 291
StyD4I CCNGG 1 cut(s) 319
TaaI ACNGT 3 cut(s) 95, 439, 1110
TaqI TCGA 3 cut(s) 117, 171, 683
TasI AATT 2 cut(s) 583, 603
TatI WGTACW 1 cut(s) 287
TfiI GAWTC 2 cut(s) 142, 531
Tru1I TTAA 2 cut(s) 239, 404
Tru9I TTAA 2 cut(s) 239, 404
TscAI CASTG 2 cut(s) 541, 967
TseI GCWGC 4 cut(s) 308, 596, 1073, 1088
TspDTI ATGAA 5 cut(s) 225, 230, 497, 797, 909
TspRI CASTG 2 cut(s) 541, 967
Van91I CCANNNNNTGG 1 cut(s) 355
XapI RAATTY 1 cut(s) 583
XceI RCATGY 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 710
XspI CTAG 3 cut(s) 12, 41, 291
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.