Rh3BG241000

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001798
Physical Location & Seq
Forward (+)
22726536 .. 22731243
4708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG241000.1

Sequence Viewer

Length: 1119 bp
ATGGAGAACCCTAGCAGTAAGAGAACCACCGCTGGAGCCCTAGAAGAGAACATCTTGGCCAAAGCCGACGACTACCGTAAAGCCATATTCCCCTTTTTTCGATTTCGTTGGCTTATTTTTACTGAATCTGATCTCCGAGGCTCTGGAAGTTCTAGTAGCGAGAGGGAAGCTGCTAATAATCCTGGGGGATCAGTTGACTCCTCTGGTTTCCAATGTTTGATAGAAGACTTTGCTGAACCAAACTTCCAAGCCTCAGAAACAAAGTCCTTAGGGAACATGTTGCTGTTTCAATACCTAGTTAACGCTCTTGAAGGAGATTTTCAACCTCACAACTGTATCTATGCAGAAACTGCAAACTGGGTCCTTCTGAGAGTCTTTGCTCAACATGCTTTTGGTATCAAGAAAGATAAACTACAAAAACTTGATGAAGGATTGATTATGGAGCTTGACTTGTCGAAGAAGACAGCAGAAATGCAAGGGTCTACTACAACAGCAGATGGTGTCAGAACTCCTCTGCTGGAGATAGTTCTGGATGAGCTAACTTACGATGAGGATATTCTTGACTCATTTCTTCAGGATTTCAATGAACCTAAATGGAAGCTTGAGATAGTTGTGCAGTATTTGTGGAAATACAATGGTAAGATGAGCTTTCAAAGTTATAGAAAACCAATCAAATTTCCTACAGATGATGCATCATTCAATGGAGCATTGAAGTGCTTTTCAAATGTCAACAGCACAAAAACCACCATAAAAAAGATTAGGCCAGAACTAGCTCAGTTGCTTTTAGCACACGGCCTTCAGAATATCCAAATGGATTTTACAATGAGGCTTGCAATGTTAAGTCGTTCAGTAGCAAGTGTTGTACTTCAACCCTCATCAGATATTGATAAAATCTTTTCTGTTTTTAATTTGGCTCATTTGTCCTTACCGTGTAAACAACATGTCGAAGGCACCTCTGCTTCCAGTGAAGAAACAAGTAACAGAGCCCTCATTGAAGTATCTGAGAATATAATATCTGCATTTAGAAATCTGAAGACTGCAGACAAGAAGATGGAGATTTTGCCACTTGGAAAAGAAGCATTGTTTATGGCAGCTACTATCATATCAGCACAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

372

Amino Acids

41.66

Weight (kDa)

5.36

Isoelectric Point (pI)

43.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 950
AccI GTMKAC 1 cut(s) 482
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 57
AcsI RAATTY 1 cut(s) 674
AcuI CTGAAG 3 cut(s) 557, 782, 1052
AfaI GTAC 1 cut(s) 864
AflIII ACRYGT 2 cut(s) 276, 940
AjnI CCWGG 1 cut(s) 181
AloI GAACNNNNNNTCC 2 cut(s) 228, 260
AluBI AGCT 7 cut(s) 170, 445, 538, 601, 648, 773, 1094
AluI AGCT 7 cut(s) 170, 445, 538, 601, 648, 773, 1094
AlwI GGATC 1 cut(s) 196
AlwNI CAGNNNCTG 1 cut(s) 350
AoxI GGCC 3 cut(s) 57, 761, 793
ApeKI GCWGC 2 cut(s) 170, 1091
ApoI RAATTY 1 cut(s) 674
AspS9I GGNCC 1 cut(s) 361
AvaII GGWCC 1 cut(s) 361
AxyI CCTNAGG 1 cut(s) 268
BaeI ACNNNNGTAYC 2 cut(s) 319, 352
BalI TGGCCA 1 cut(s) 59
BanI GGYRCC 1 cut(s) 950
BanII GRGCYC 2 cut(s) 40, 988
BbsI GAAGAC 3 cut(s) 231, 467, 1040
BbvI GCAGC 2 cut(s) 157, 1103
BccI CCATC 2 cut(s) 491, 1045
BceAI ACGGC 1 cut(s) 808
BciT130I CCWGG 1 cut(s) 183
BfaI CTAG 5 cut(s) 12, 41, 153, 296, 770
BfmI CTRYAG 2 cut(s) 681, 1038
BisI GCNGC 2 cut(s) 171, 1092
BlsI GCNGC 2 cut(s) 172, 1093
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 3 cut(s) 37, 362, 952
BmrFI CCNGG 1 cut(s) 183
BmrI ACTGGG 1 cut(s) 367
BmsI GCATC 2 cut(s) 679, 701
BmuI ACTGGG 1 cut(s) 367
BpiI GAAGAC 3 cut(s) 231, 467, 1040
BpmI CTGGAG 2 cut(s) 54, 539
BpuEI CTTGAG 1 cut(s) 623
BsaJI CCNNGG 2 cut(s) 136, 182
Bse1I ACTGG 2 cut(s) 362, 963
Bse21I CCTNAGG 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 840
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 136, 182
BseGI GGATG 1 cut(s) 538
BseMI GCAATG 1 cut(s) 840
BseMII CTCAG 4 cut(s) 267, 359, 788, 993
BseNI ACTGG 2 cut(s) 362, 963
BseRI GAGGAG 2 cut(s) 190, 501
BseXI GCAGC 2 cut(s) 157, 1103
BsgI GTGCAG 1 cut(s) 635
BshFI GGCC 3 cut(s) 59, 763, 795
BshNI GGYRCC 1 cut(s) 950
BsnI GGCC 3 cut(s) 59, 763, 795
Bsp1286I GDGCHC 2 cut(s) 40, 988
Bsp143I GATC 2 cut(s) 130, 188
BspACI CCGC 1 cut(s) 30
BspANI GGCC 3 cut(s) 59, 763, 795
BspCNI CTCAG 4 cut(s) 266, 360, 787, 994
BspLI GGNNCC 3 cut(s) 37, 362, 952
BspMAI CTGCAG 1 cut(s) 1042
BspPI GGATC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 950
BsrDI GCAATG 1 cut(s) 840
BsrI ACTGG 2 cut(s) 362, 963
BssECI CCNNGG 2 cut(s) 136, 182
BssMI GATC 2 cut(s) 130, 188
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 4 cut(s) 77, 335, 930, 1113
Bst6I CTCTTC 1 cut(s) 39
BstAPI GCANNNNNTGC 1 cut(s) 350
BstC8I GCNNGC 1 cut(s) 831
BstDEI CTNAG 5 cut(s) 253, 268, 368, 774, 1002
BstF5I GGATG 1 cut(s) 538
BstKTI GATC 2 cut(s) 133, 191
BstMBI GATC 2 cut(s) 130, 188
BstMWI GCNNNNNNNGC 2 cut(s) 350, 386
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 3 cut(s) 280, 389, 944
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 2 cut(s) 681, 1038
BstV1I GCAGC 2 cut(s) 157, 1103
BstV2I GAAGAC 3 cut(s) 231, 467, 1040
Bsu36I CCTNAGG 1 cut(s) 268
BsuRI GGCC 3 cut(s) 59, 763, 795
BtsCI GGATG 1 cut(s) 538
BtsIMutI CAGTG 1 cut(s) 970
Cac8I GCNNGC 1 cut(s) 831
CaiI CAGNNNCTG 1 cut(s) 350
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 863
CviAII CATG 3 cut(s) 277, 386, 941
CviQI GTAC 1 cut(s) 863
DdeI CTNAG 5 cut(s) 253, 268, 368, 774, 1002
DpnI GATC 2 cut(s) 132, 190
DpnII GATC 2 cut(s) 130, 188
EaeI YGGCCR 1 cut(s) 57
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco24I GRGCYC 2 cut(s) 40, 988
Eco47I GGWCC 1 cut(s) 361
Eco57I CTGAAG 3 cut(s) 557, 782, 1052
Eco81I CCTNAGG 1 cut(s) 268
EcoO109I RGGNCCY 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 181
EcoT22I ATGCAT 1 cut(s) 694
EcoT38I GRGCYC 2 cut(s) 40, 988
FaeI CATG 3 cut(s) 280, 389, 944
FalI AAGNNNNNCTT 2 cut(s) 632, 664
FatI CATG 3 cut(s) 276, 385, 940
FblI GTMKAC 1 cut(s) 482
Fnu4HI GCNGC 2 cut(s) 171, 1092
FokI GGATG 1 cut(s) 545
FriOI GRGCYC 2 cut(s) 40, 988
Fsp4HI GCNGC 2 cut(s) 171, 1092
FspBI CTAG 5 cut(s) 12, 41, 153, 296, 770
GluI GCNGC 2 cut(s) 171, 1092
GsuI CTGGAG 2 cut(s) 54, 539
HaeIII GGCC 3 cut(s) 59, 763, 795
Hin1II CATG 3 cut(s) 280, 389, 944
HincII GTYRAC 3 cut(s) 196, 301, 730
HindII GTYRAC 3 cut(s) 196, 301, 730
HindIII AAGCTT 1 cut(s) 599
HinfI GANTC 4 cut(s) 125, 197, 372, 563
HpaI GTTAAC 1 cut(s) 301
Hpy166II GTNNAC 5 cut(s) 196, 301, 483, 730, 935
Hpy188I TCNGA 9 cut(s) 130, 137, 256, 369, 506, 801, 880, 1003, 1032
Hpy188III TCNNGA 6 cut(s) 144, 308, 400, 530, 560, 575
Hpy8I GTNNAC 5 cut(s) 196, 301, 483, 730, 935
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 5 cut(s) 305, 374, 422, 806, 941
HpyCH4III ACNGT 4 cut(s) 77, 335, 930, 1113
HpyCH4V TGCA 8 cut(s) 344, 353, 475, 616, 692, 833, 1019, 1040
HpyF10VI GCNNNNNNNGC 2 cut(s) 350, 386
HpyF3I CTNAG 5 cut(s) 253, 268, 368, 774, 1002
Hsp92II CATG 3 cut(s) 280, 389, 944
KspAI GTTAAC 1 cut(s) 301
Kzo9I GATC 2 cut(s) 130, 188
LmnI GCTCC 3 cut(s) 35, 442, 704
Lsp1109I GCAGC 2 cut(s) 157, 1103
LweI GCATC 2 cut(s) 679, 701
MaeI CTAG 5 cut(s) 12, 41, 153, 296, 770
MaeIII GTNAC 1 cut(s) 977
MalI GATC 2 cut(s) 132, 190
MboI GATC 2 cut(s) 130, 188
MboII GAAGA 8 cut(s) 56, 236, 469, 472, 563, 980, 1045, 1060
MhlI GDGCHC 2 cut(s) 40, 988
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 2 cut(s) 674, 907
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 3 cut(s) 191, 381, 557
Mox20I TGGCCA 1 cut(s) 59
Mph1103I ATGCAT 1 cut(s) 694
MscI TGGCCA 1 cut(s) 59
MseI TTAA 3 cut(s) 300, 839, 906
MslI CAYNNNNRTG 1 cut(s) 712
Msp20I TGGCCA 1 cut(s) 59
MspA1I CMGCKG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MwoI GCNNNNNNNGC 2 cut(s) 350, 386
NdeII GATC 2 cut(s) 130, 188
NlaIII CATG 3 cut(s) 280, 389, 944
NlaIV GGNNCC 3 cut(s) 37, 362, 952
NsiI ATGCAT 1 cut(s) 694
NspI RCATGY 3 cut(s) 280, 389, 944
PciI ACATGT 2 cut(s) 276, 940
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 2 cut(s) 172, 1093
PleI GAGTC 3 cut(s) 191, 380, 557
PpsI GAGTC 3 cut(s) 191, 380, 557
PpuMI RGGWCCY 1 cut(s) 361
PscI ACATGT 2 cut(s) 276, 940
Psp5II RGGWCCY 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 3 cut(s) 37, 362, 952
PspPI GGNCC 1 cut(s) 361
PspPPI RGGWCCY 1 cut(s) 361
PstI CTGCAG 1 cut(s) 1042
PstNI CAGNNNCTG 1 cut(s) 350
RsaI GTAC 1 cut(s) 864
RsaNI GTAC 1 cut(s) 863
RseI CAYNNNNRTG 1 cut(s) 712
SaqAI TTAA 3 cut(s) 300, 839, 906
SatI GCNGC 2 cut(s) 171, 1092
Sau3AI GATC 2 cut(s) 130, 188
Sau96I GGNCC 1 cut(s) 361
SchI GAGTC 3 cut(s) 191, 381, 557
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 2 cut(s) 40, 988
SfaNI GCATC 2 cut(s) 679, 701
SfcI CTRYAG 2 cut(s) 681, 1038
SinI GGWCC 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 712
SmlI CTYRAG 1 cut(s) 602
SmoI CTYRAG 1 cut(s) 602
Sse9I AATT 2 cut(s) 674, 907
SsiI CCGC 1 cut(s) 30
SspMI CTAG 5 cut(s) 12, 41, 153, 296, 770
StyD4I CCNGG 1 cut(s) 181
TaaI ACNGT 4 cut(s) 77, 335, 930, 1113
TaqI TCGA 3 cut(s) 100, 455, 945
TasI AATT 2 cut(s) 674, 907
TatI WGTACW 1 cut(s) 862
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 3 cut(s) 300, 839, 906
Tru9I TTAA 3 cut(s) 300, 839, 906
TscAI CASTG 1 cut(s) 970
TseI GCWGC 2 cut(s) 170, 1091
TspDTI ATGAA 2 cut(s) 441, 600
TspRI CASTG 1 cut(s) 970
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 1 cut(s) 674
XceI RCATGY 3 cut(s) 280, 389, 944
XmiI GTMKAC 1 cut(s) 482
XspI CTAG 5 cut(s) 12, 41, 153, 296, 770
Zsp2I ATGCAT 1 cut(s) 694
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.