Rmu_sc0014848.1_g000001

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0014848.1
OG0001798
Physical Location & Seq
Reverse (-)
1713 .. 3613
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0014848.1_g000001.1.cds

Sequence Viewer

Length: 588 bp
atgcagaagtttctgataatgattatggagcttgacttgtcgaagaagacagcagaaatgcaagggtctactacaagagcagatggtgtcagaactcctctgctggagatagttctggatgagctaacttacgataaggatattcttgactcatttcttcaggttttcaatgaacctaaatggaagcttgagatagttgtgcagtatttgtggaaatacattggtaagccttctgttcgaagtcgtagagcaaatggtcctacagatgatgcatcattcaatggagcattgaagtgcttttcaaatgtcaccagcacaaaaaccacaataaaaaagattaggccagaactagctcagttgcttttagcacatggccttcaggctcatttatccttaccatgtaaacaacatgtcaaaggcacctctgcttccagtgaagaaagaagtaacagctccctcattgaagtatctgagaatataatatctgcatttagaaatctgaagactgcggacaagaagatggagattttgccacttggaaaagaagcactgtttatggcagctactatcatatcagcgcagtcatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.77

Weight (kDa)

9.02

Isoelectric Point (pI)

39.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 419
AccI GTMKAC 1 cut(s) 68
AciI CCGC 1 cut(s) 509
AcuI CTGAAG 3 cut(s) 143, 362, 521
AflIII ACRYGT 1 cut(s) 409
AgsI TTSAA 5 cut(s) 169, 280, 292, 303, 464
AluBI AGCT 6 cut(s) 31, 124, 187, 353, 453, 563
AluI AGCT 6 cut(s) 31, 124, 187, 353, 453, 563
AoxI GGCC 2 cut(s) 341, 373
ApeKI GCWGC 1 cut(s) 560
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 1 cut(s) 257
AsuHPI GGTGA 1 cut(s) 301
AsuII TTCGAA 1 cut(s) 238
AvaII GGWCC 1 cut(s) 257
BanI GGYRCC 1 cut(s) 419
BbsI GAAGAC 2 cut(s) 53, 509
BbvI GCAGC 1 cut(s) 572
BccI CCATC 2 cut(s) 77, 514
BfaI CTAG 1 cut(s) 350
BfmI CTRYAG 1 cut(s) 261
BisI GCNGC 1 cut(s) 561
BlsI GCNGC 1 cut(s) 562
Bme18I GGWCC 1 cut(s) 257
BmgT120I GGNCC 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 421
BmsI GCATC 2 cut(s) 259, 281
BpiI GAAGAC 2 cut(s) 53, 509
BpmI CTGGAG 1 cut(s) 125
Bpu14I TTCGAA 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 209
Bse1I ACTGG 1 cut(s) 432
BseGI GGATG 1 cut(s) 124
BseMII CTCAG 2 cut(s) 368, 462
BseNI ACTGG 1 cut(s) 432
BseRI GAGGAG 1 cut(s) 87
BseXI GCAGC 1 cut(s) 572
BsgI GTGCAG 1 cut(s) 221
BshFI GGCC 2 cut(s) 343, 375
BshNI GGYRCC 1 cut(s) 419
BsnI GGCC 2 cut(s) 343, 375
Bsp119I TTCGAA 1 cut(s) 238
BspACI CCGC 1 cut(s) 509
BspANI GGCC 2 cut(s) 343, 375
BspCNI CTCAG 2 cut(s) 367, 463
BspLI GGNNCC 1 cut(s) 421
BspT104I TTCGAA 1 cut(s) 238
BspT107I GGYRCC 1 cut(s) 419
BsrI ACTGG 1 cut(s) 432
Bst4CI ACNGT 1 cut(s) 552
BstBI TTCGAA 1 cut(s) 238
BstDEI CTNAG 2 cut(s) 354, 471
BstF5I GGATG 1 cut(s) 124
BstHHI GCGC 1 cut(s) 580
BstNSI RCATGY 1 cut(s) 413
BstSFI CTRYAG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 572
BstV2I GAAGAC 2 cut(s) 53, 509
BsuRI GGCC 2 cut(s) 343, 375
BtsCI GGATG 1 cut(s) 124
BtsIMutI CAGTG 2 cut(s) 439, 548
CfoI GCGC 1 cut(s) 580
Cfr13I GGNCC 1 cut(s) 257
CviAII CATG 3 cut(s) 371, 399, 410
DdeI CTNAG 2 cut(s) 354, 471
Eco47I GGWCC 1 cut(s) 257
Eco57I CTGAAG 3 cut(s) 143, 362, 521
EcoT22I ATGCAT 1 cut(s) 274
FaeI CATG 3 cut(s) 374, 402, 413
FaiI YATR 8 cut(s) 26, 372, 400, 411, 479, 557, 572, 586
FatI CATG 3 cut(s) 370, 398, 409
FblI GTMKAC 1 cut(s) 68
Fnu4HI GCNGC 1 cut(s) 561
FokI GGATG 1 cut(s) 131
Fsp4HI GCNGC 1 cut(s) 561
FspBI CTAG 1 cut(s) 350
GlaI GCGC 1 cut(s) 579
GluI GCNGC 1 cut(s) 561
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 2 cut(s) 343, 375
HhaI GCGC 1 cut(s) 580
Hin1II CATG 3 cut(s) 374, 402, 413
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 1 cut(s) 149
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 69, 404
Hpy188I TCNGA 4 cut(s) 15, 92, 472, 501
Hpy188III TCNNGA 2 cut(s) 116, 146
Hpy8I GTNNAC 2 cut(s) 69, 404
HpyAV CCTTC 2 cut(s) 240, 386
HpyCH4III ACNGT 1 cut(s) 552
HpyCH4V TGCA 5 cut(s) 4, 61, 202, 272, 488
HpyF3I CTNAG 2 cut(s) 354, 471
Hsp92II CATG 3 cut(s) 374, 402, 413
HspAI GCGC 1 cut(s) 578
LmnI GCTCC 3 cut(s) 28, 284, 458
LpnPI CCDG 7 cut(s) 89, 101, 146, 325, 357, 365, 445
Lsp1109I GCAGC 1 cut(s) 572
LweI GCATC 2 cut(s) 259, 281
MaeI CTAG 1 cut(s) 350
MaeIII GTNAC 2 cut(s) 307, 446
MboII GAAGA 6 cut(s) 55, 58, 149, 449, 514, 529
MlyI GAGTC 1 cut(s) 143
MnlI CCTC 3 cut(s) 108, 433, 467
Mph1103I ATGCAT 1 cut(s) 274
MslI CAYNNNNRTG 1 cut(s) 292
NlaIII CATG 3 cut(s) 374, 402, 413
NlaIV GGNNCC 1 cut(s) 421
NmuCI GTSAC 1 cut(s) 307
NsiI ATGCAT 1 cut(s) 274
NspI RCATGY 1 cut(s) 413
NspV TTCGAA 1 cut(s) 238
PciI ACATGT 1 cut(s) 409
PkrI GCNGC 1 cut(s) 562
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PscI ACATGT 1 cut(s) 409
PspN4I GGNNCC 1 cut(s) 421
PspPI GGNCC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 292
SatI GCNGC 1 cut(s) 561
Sau96I GGNCC 1 cut(s) 257
SchI GAGTC 1 cut(s) 143
SetI ASST 9 cut(s) 33, 126, 165, 178, 189, 355, 425, 455, 565
SfaNI GCATC 2 cut(s) 259, 281
SfcI CTRYAG 1 cut(s) 261
SfuI TTCGAA 1 cut(s) 238
SinI GGWCC 1 cut(s) 257
SmiMI CAYNNNNRTG 1 cut(s) 292
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
SsiI CCGC 1 cut(s) 509
SspMI CTAG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 552
TaqI TCGA 2 cut(s) 41, 238
TscAI CASTG 2 cut(s) 439, 555
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 1 cut(s) 560
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 186
TspRI CASTG 2 cut(s) 439, 555
VpaK11BI GGWCC 1 cut(s) 257
XceI RCATGY 1 cut(s) 413
XmiI GTMKAC 1 cut(s) 68
XspI CTAG 1 cut(s) 350
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.