Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001798

Physical Location & Seq

Genomic Coordinates Forward (+)

13029534 .. 13052093

Gene Structure 22560 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0158000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAGATCGGCGCCGGTCACAAATCGAAGATGCCGTGCCCAAACTCCGACCACATGGAGTCGGAAAAGTCTGAAGTGACCTCCTTCACCGAGTCATTCTCCAAATACCACATACCAAAGTTGAAAGATGCTTGGCCGCAGGTGGAATCGGCTTTACAAGAGCATGGAATTTCTTACACACTCAATCTGGGTGAGCTTTACATGACTGTCTCAACCACCCCAAGGACCAAAGATCCAGACATCATTCACAGGGCTAGGGAGATTATTGTGCTTCTGTCCAAAACTACTGTTCCGACATATGTGGTAATTGATATATTGAATGGCGATATGCATCATGACCACATCAAAACTGGGTATCAAGAAGGTGGGCTTGCCGCAATACATGGGATCAAGAAGGAGCGATTTGATAAACGGAGGACCAGGTTCTTGGAAAACTTAAAGGACCTTGCATGCCTGATGAGTTGTCATCTGTATGTTAACGGAAACACTGTGACTGCTGCGGGAACTTCACTTGAGCATGTAAAGGTGGTCAGAATGGTCGTTGGAAGGTGTTATGTTGAAAATGTGAATCCTGCAACTATTGTCAGTCGCTTAAAAATGAGGAAAGATATGCTTAATGTGGAGAGAAGGCTTCAAGCTTTGTTGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

24.48

Weight (kDa)

8.82

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_KRR1_1st	PF17903	28 - 96	3.9e-13	Krr1 KH1 domain
KH_KRR1_2nd	PF21800	131 - 204	2.5e-09	KRR1 small subunit processome component, second KH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18470
fragaria_vesca	FvH4_3g08270 FvH4_3g08270 FvH4_3g08270 FvH4_3g08270 FvH4_3g08270 FvH4_3g08270 FvH4_7g02070 FvH4_7g02070
malus_domestica	MD05G1306600.v1.1 MD10G1285700.v1.1 MD10G1285800.v1.1 MD10G1285900.v1.1
prunus_persica	Prupe.4G055900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115591 RchiOBHm_Chr3g0476981 RchiOBHm_Chr3g0477111 RchiOBHm_Chr4g0432891 RchiOBHm_Chr5g0009801
rosa_laevigata	RLG00000031701
rosa_multiflora	Rmu_sc0000288.1_g000020 Rmu_sc0008691.1_g000001 Rmu_sc0014848.1_g000001 Rmu_sc0023367.1_g000006 Rmu_ssc0000274.1_g000004
rosa_roxburghii	Rroxscaffold_1G00066390 Rroxscaffold_6G00404420 Rroxscaffold_6G00404900
rosa_rugosa	Rorug03G0158000 Rorug04G0445900 Rorug05G0241800
rosa_samantha	Rh2BG457800 Rh2DG467500 Rh3AG208000 Rh3AG208100 Rh3BG241000 Rh3BG242100 Rh3CG235600 Rh3DG234300 Rh5AG077400 Rh5AG529000 Rh5BG072500 Rh5CG084900 Rh5DG073000
rosa_wichuraiana	Rw3G018980 Rw3G018990 Rw5G007130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	130
Acc36I	ACCTGC	1 cut(s)	130
AccB1I	GGYRCC	1 cut(s)	11
AciI	CCGC	3 cut(s)	137, 375, 500
AclWI	GGATC	2 cut(s)	227, 395
AcoI	YGGCCR	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	222
AgsI	TTSAA	4 cut(s)	124, 319, 560, 635
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	2 cut(s)	196, 638
AluI	AGCT	2 cut(s)	196, 638
Alw26I	GTCTC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	227, 395
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	497
ApoI	RAATTY	1 cut(s)	168
AspLEI	GCGC	1 cut(s)	14
AspS9I	GGNCC	3 cut(s)	225, 417, 442
AsuHPI	GGTGA	2 cut(s)	79, 203
AvaII	GGWCC	3 cut(s)	225, 417, 442
BaeGI	GKGCMC	1 cut(s)	41
BanI	GGYRCC	1 cut(s)	11
BbvI	GCAGC	1 cut(s)	484
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	214
BfaI	CTAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	3 cut(s)	137, 375, 498
BlsI	GCNGC	3 cut(s)	138, 376, 499
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	3 cut(s)	225, 417, 442
BmgT120I	GGNCC	3 cut(s)	225, 417, 442
BmiI	GGNNCC	1 cut(s)	13
BmrFI	CCNGG	1 cut(s)	421
BmrI	ACTGGG	1 cut(s)	360
BmsI	GCATC	3 cut(s)	21, 118, 340
BmuI	ACTGGG	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
BpuEI	CTTGAG	1 cut(s)	533
BsaBI	GATNNNNATC	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	1 cut(s)	222
Bse118I	RCCGGY	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	355
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	421
BseDI	CCNNGG	1 cut(s)	221
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	355
BseSI	GKGCMC	1 cut(s)	41
BseXI	GCAGC	1 cut(s)	484
BshFI	GGCC	1 cut(s)	136
BshNI	GGYRCC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	15
BslI	CCNNNNNNNGG	1 cut(s)	222
BsmAI	GTCTC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp143I	GATC	3 cut(s)	6, 232, 387
BspACI	CCGC	3 cut(s)	137, 375, 500
BspANI	GGCC	1 cut(s)	136
BspHI	TCATGA	1 cut(s)	334
BspLI	GGNNCC	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	2 cut(s)	227, 395
BspT107I	GGYRCC	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	14
BsrI	ACTGG	1 cut(s)	355
BssAI	RCCGGY	1 cut(s)	14
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	3 cut(s)	6, 232, 387
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	221
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	3 cut(s)	208, 289, 490
BstACI	GRCGYC	1 cut(s)	12
BstC8I	GCNNGC	2 cut(s)	372, 451
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	1 cut(s)	14
BstKTI	GATC	3 cut(s)	9, 235, 390
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	3 cut(s)	6, 232, 387
BstNI	CCWGG	1 cut(s)	421
BstNSI	RCATGY	2 cut(s)	453, 521
BstSCI	CCNGG	1 cut(s)	419
BstSLI	GKGCMC	1 cut(s)	41
BstV1I	GCAGC	1 cut(s)	484
BstX2I	RGATCY	1 cut(s)	232
BstXI	CCANNNNNNTGG	1 cut(s)	427
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	486
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	372, 451
CciI	TCATGA	1 cut(s)	334
CfoI	GCGC	1 cut(s)	14
Cfr10I	RCCGGY	1 cut(s)	14
Cfr13I	GGNCC	3 cut(s)	225, 417, 442
CsiI	ACCWGGT	1 cut(s)	419
CviAII	CATG	7 cut(s)	55, 164, 202, 335, 383, 450, 518
CviJI	RGCY	7 cut(s)	136, 152, 196, 254, 370, 631, 638
CviKI_1	RGCY	7 cut(s)	136, 152, 196, 254, 370, 631, 638
DinI	GGCGCC	1 cut(s)	13
DpnI	GATC	3 cut(s)	8, 234, 389
DpnII	GATC	3 cut(s)	6, 232, 387
EaeI	YGGCCR	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	221
Eco47I	GGWCC	3 cut(s)	225, 417, 442
Eco57I	CTGAAG	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	419
EcoT14I	CCWWGG	1 cut(s)	221
EcoT22I	ATGCAT	1 cut(s)	333
EgeI	GGCGCC	1 cut(s)	13
EheI	GGCGCC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	221
FaeI	CATG	7 cut(s)	58, 167, 205, 338, 386, 453, 521
FalI	AAGNNNNNCTT	4 cut(s)	354, 386, 597, 629
FatI	CATG	7 cut(s)	54, 163, 201, 334, 382, 449, 517
FauI	CCCGC	1 cut(s)	493
FauNDI	CATATG	1 cut(s)	298
Fnu4HI	GCNGC	3 cut(s)	137, 375, 498
Fsp4HI	GCNGC	3 cut(s)	137, 375, 498
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	1 cut(s)	13
GluI	GCNGC	3 cut(s)	137, 375, 498
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	1 cut(s)	14
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	7 cut(s)	58, 167, 205, 338, 386, 453, 521
Hin6I	GCGC	1 cut(s)	12
HinP1I	GCGC	1 cut(s)	12
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	636
HinfI	GANTC	4 cut(s)	59, 92, 146, 568
HpaI	GTTAAC	1 cut(s)	478
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	2 cut(s)	79, 203
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188I	TCNGA	5 cut(s)	49, 64, 73, 294, 533
Hpy188III	TCNNGA	4 cut(s)	236, 335, 359, 391
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	5 cut(s)	94, 356, 388, 540, 621
HpyCH4III	ACNGT	3 cut(s)	208, 289, 490
HpyCH4V	TGCA	3 cut(s)	331, 449, 575
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	7 cut(s)	58, 167, 205, 338, 386, 453, 521
HspAI	GCGC	1 cut(s)	12
KasI	GGCGCC	1 cut(s)	11
KspAI	GTTAAC	1 cut(s)	478
Kzo9I	GATC	3 cut(s)	6, 232, 387
LmnI	GCTCC	1 cut(s)	397
Lsp1109I	GCAGC	1 cut(s)	484
LweI	GCATC	3 cut(s)	21, 118, 340
MabI	ACCWGGT	1 cut(s)	419
MaeI	CTAG	1 cut(s)	255
MaeIII	GTNAC	3 cut(s)	17, 76, 490
MalI	GATC	3 cut(s)	8, 234, 389
MboI	GATC	3 cut(s)	6, 232, 387
MboII	GAAGA	1 cut(s)	40
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	2 cut(s)	168, 306
Mly113I	GGCGCC	1 cut(s)	12
MlyI	GAGTC	2 cut(s)	68, 101
MmeI	TCCRAC	4 cut(s)	42, 72, 317, 523
MnlI	CCTC	3 cut(s)	91, 408, 594
Mph1103I	ATGCAT	1 cut(s)	333
MseI	TTAA	4 cut(s)	437, 477, 593, 615
MslI	CAYNNNNRTG	1 cut(s)	471
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	421
MvaI	CCWGG	1 cut(s)	421
NarI	GGCGCC	1 cut(s)	12
NdeI	CATATG	1 cut(s)	298
NdeII	GATC	3 cut(s)	6, 232, 387
NlaIII	CATG	7 cut(s)	58, 167, 205, 338, 386, 453, 521
NlaIV	GGNNCC	1 cut(s)	13
NmuCI	GTSAC	3 cut(s)	17, 76, 490
NsiI	ATGCAT	1 cut(s)	333
NspI	RCATGY	2 cut(s)	453, 521
PaeI	GCATGC	1 cut(s)	453
PagI	TCATGA	1 cut(s)	334
PaqCI	CACCTGC	1 cut(s)	130
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PfeI	GAWTC	2 cut(s)	146, 568
PkrI	GCNGC	3 cut(s)	138, 376, 499
PleI	GAGTC	2 cut(s)	67, 100
PluTI	GGCGCC	1 cut(s)	15
PpsI	GAGTC	2 cut(s)	67, 100
PpuMI	RGGWCCY	1 cut(s)	442
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	1 cut(s)	13
PspPI	GGNCC	3 cut(s)	225, 417, 442
PspPPI	RGGWCCY	1 cut(s)	442
PsuI	RGATCY	1 cut(s)	232
RseI	CAYNNNNRTG	1 cut(s)	471
SaqAI	TTAA	4 cut(s)	437, 477, 593, 615
SatI	GCNGC	3 cut(s)	137, 375, 498
Sau3AI	GATC	3 cut(s)	6, 232, 387
Sau96I	GGNCC	3 cut(s)	225, 417, 442
SchI	GAGTC	2 cut(s)	68, 101
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	9 cut(s)	83, 144, 198, 367, 425, 447, 528, 551, 640
SexAI	ACCWGGT	1 cut(s)	419
SfaNI	GCATC	3 cut(s)	21, 118, 340
SfoI	GGCGCC	1 cut(s)	13
SinI	GGWCC	3 cut(s)	225, 417, 442
SmiMI	CAYNNNNRTG	1 cut(s)	471
SmlI	CTYRAG	1 cut(s)	512
SmoI	CTYRAG	1 cut(s)	512
SphI	GCATGC	1 cut(s)	453
Sse9I	AATT	2 cut(s)	168, 306
SsiI	CCGC	3 cut(s)	137, 375, 500
SspDI	GGCGCC	1 cut(s)	11
SspMI	CTAG	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	419
StyI	CCWWGG	1 cut(s)	221
TaaI	ACNGT	3 cut(s)	208, 289, 490
TaqI	TCGA	1 cut(s)	26
TasI	AATT	2 cut(s)	168, 306
TauI	GCSGC	2 cut(s)	139, 377
TfiI	GAWTC	2 cut(s)	146, 568
Tru1I	TTAA	4 cut(s)	437, 477, 593, 615
Tru9I	TTAA	4 cut(s)	437, 477, 593, 615
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	3 cut(s)	17, 76, 490
TseI	GCWGC	1 cut(s)	497
Tsp45I	GTSAC	3 cut(s)	17, 76, 490
TspGWI	ACGGA	2 cut(s)	427, 495
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	3 cut(s)	225, 417, 442
XapI	RAATTY	1 cut(s)	168
XceI	RCATGY	2 cut(s)	453, 521
XcmI	CCANNNNNNNNNTGG	1 cut(s)	347
XspI	CTAG	1 cut(s)	255
Zsp2I	ATGCAT	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.