Prupe.4G055900_v2.0.a1

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001798
Physical Location & Seq
Forward (+)
2681229 .. 2686080
4852 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G055900.1

Sequence Viewer

Length: 1425 bp
ATGGAGAGGCCTGGCAGTATGAGAACCGTGGGAGGAGGGATCGAAGAGAACATATTGGCAATCCTCGACTCTTCTGAAGCTAAAGACACTCTGGACGCCTTCGAGGATAGAGTCGCTTTTATCGAAGCTGTTCGTGCTGCTTCCATTGTAGCAAAAAATGGAACTCCACCTACCTATAAAATGTATGAGGCAATCTTCTCCATCTTGAGGATTGGAAAGTCTCTAGAATTGACTATGGCAAGTTTTCAGCTTTTGAATGAGTTAGATAAGCGTTTCCCTCGGGTAAATTCTTCTGATGTGGATAAATCAAATTCATCAAGCAGTGTGCCTGAACTAATCATGGTTCAAGAGGTTGGGTTTCCATTCGTTTTCAGCTCCGAAAATGCTAGCCGTGAGAGGGGAGCTGCTAATAACTCAGAGGGACCAGTTGACTCATCAGGTTTCCAACTTTTGATACAAGACCTTGCTGACGCAACCGATGAAGGAAACTTACGAGCATCAGAAACAAAGTCCTTAACAAACATGCTATTGTTTCAATACCTAGTTACCGTTTTTGAAGGAGATTTTCGACCACGTAACAGTGTCTATGAAGATACCATGAACTGGGTAGTTCTGAGAGAGTCTTTACTGAACATGCTTCTGGTGTCAAGAAAAGTAAACTACAAAAGCTTGATGAAGGATTGCTTGACCATTATGTGTAAACTGTATCAAAACTGTGCTGGATTCACCGACGATCTGATATGTTCAGAGAATTCTGCGGCACAACCAGCTGAAAATTTTGATACTGCTGCTGCAATTTCTTTACTTGAGGTAGGAAAGCATACCTGCATAGCCATGCAGAAGTTTCTAATAATGATAATGGAGCTTGATGTGTCCAAGAAGAGTGCAGAGATGCAAGGTTCTACTACCCGAGCTGATGGTGTCAGAACTCCTCTGGTGGAGATAATTCTGGACGAGCTAACATACAATAGAGATATTATTTCCCCATTTCTTCAGGTTTTCAATGAACCTAAATGGAAGCTTGAGGTAGTTGTGCAGTACTTGTGGAAATACATTGGTAAGCCTTCTGTTCGCACTCGTAGGTCAAACAGTCCTACGGACAATGCATCATTCAGTGGAGCATTGAAGTGCTTTTCAAATATCACCAGCACAAAAAGTACCTTAAAAAAGATTAGGACAGAAGTAGTTCAGTTGTTGTTAGCACATGGCTTTCAGGCTCATTTGTCGCTTCAAAGTGAGCACCATCCTGTTGAAGACACCTCTGCTTCCAATGAAGAAAGAAGTTGCAGCTTGCTTATTGAGATATGCAAGAATATAATATCTGCATTTAAAAATATGAAGACAGCAGACAAGCAGATGGAGATTTTGTCACTTGGAAAGGAAGCACTATTTACGGCAGCTACTATCATATCAGCAAAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

475

Amino Acids

52.64

Weight (kDa)

5.37

Isoelectric Point (pI)

38.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 833
AccB7I CCANNNNNTGG 1 cut(s) 603
AciI CCGC 1 cut(s) 758
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 4 cut(s) 286, 310, 751, 775
AcuI CTGAAG 2 cut(s) 96, 977
AcyI GRCGYC 1 cut(s) 96
AfaI GTAC 2 cut(s) 1040, 1159
AfiI CCNNNNNNNGG 3 cut(s) 207, 397, 603
AgsI TTSAA 9 cut(s) 256, 347, 536, 557, 1003, 1126, 1137, 1232, 1253
AjnI CCWGG 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 1242
Alw26I GTCTC 1 cut(s) 225
AlwI GGATC 1 cut(s) 47
Ama87I CYCGRG 2 cut(s) 279, 909
AoxI GGCC 1 cut(s) 8
ApeKI GCWGC 6 cut(s) 137, 404, 788, 791, 1287, 1397
ApoI RAATTY 4 cut(s) 286, 310, 751, 775
Asp700I GAANNNNTTC 2 cut(s) 129, 1185
AspS9I GGNCC 1 cut(s) 422
AsuHPI GGTGA 2 cut(s) 718, 1135
AsuNHI GCTAGC 1 cut(s) 386
AvaI CYCGRG 2 cut(s) 279, 909
AvaII GGWCC 1 cut(s) 422
BarI GAAGNNNNNNTAC 2 cut(s) 474, 506
BbsI GAAGAC 2 cut(s) 1260, 1346
Bbv12I GWGCWC 1 cut(s) 1242
BbvI GCAGC 6 cut(s) 124, 391, 775, 778, 1299, 1409
BccI CCATC 4 cut(s) 209, 911, 1251, 1351
BceAI ACGGC 2 cut(s) 375, 1410
BciT130I CCWGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 3 cut(s) 224, 387, 542
BfuAI ACCTGC 1 cut(s) 833
BisI GCNGC 7 cut(s) 138, 405, 759, 789, 792, 1288, 1398
BlsI GCNGC 7 cut(s) 139, 406, 760, 790, 793, 1289, 1399
BmcAI AGTACT 1 cut(s) 1040
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 422
BmeT110I CYCGRG 2 cut(s) 279, 909
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 1 cut(s) 423
BmrFI CCNGG 1 cut(s) 12
BmrI ACTGGG 1 cut(s) 613
BmsI GCATC 3 cut(s) 506, 882, 1115
BmtI GCTAGC 1 cut(s) 390
BmuI ACTGGG 1 cut(s) 613
BpiI GAAGAC 2 cut(s) 1260, 1346
BpuEI CTTGAG 3 cut(s) 226, 827, 1043
BsaAI YACGTR 1 cut(s) 575
BsaHI GRCGYC 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 27, 278
BsaXI ACNNNNNCTCC 2 cut(s) 1352, 1382
Bsc4I CCNNNNNNNGG 3 cut(s) 207, 397, 603
Bse1I ACTGG 2 cut(s) 425, 608
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 27, 278
BseGI GGATG 1 cut(s) 1243
BseLI CCNNNNNNNGG 3 cut(s) 207, 397, 603
BseMII CTCAG 2 cut(s) 429, 605
BseNI ACTGG 2 cut(s) 425, 608
BseRI GAGGAG 2 cut(s) 48, 921
BseXI GCAGC 6 cut(s) 124, 391, 775, 778, 1299, 1409
BsgI GTGCAG 2 cut(s) 906, 1055
BshFI GGCC 1 cut(s) 10
BsiHKAI GWGCWC 1 cut(s) 1242
BsiHKCI CYCGRG 2 cut(s) 279, 909
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 3 cut(s) 207, 397, 603
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 435
BsnI GGCC 1 cut(s) 10
BsoBI CYCGRG 2 cut(s) 279, 909
Bsp1286I GDGCHC 1 cut(s) 1242
Bsp143I GATC 2 cut(s) 39, 733
BspACI CCGC 1 cut(s) 758
BspANI GGCC 1 cut(s) 10
BspCNI CTCAG 2 cut(s) 428, 606
BspLI GGNNCC 1 cut(s) 423
BspMI ACCTGC 1 cut(s) 833
BspOI GCTAGC 1 cut(s) 390
BspPI GGATC 1 cut(s) 47
BsrI ACTGG 2 cut(s) 425, 608
BssECI CCNNGG 2 cut(s) 27, 278
BssMI GATC 2 cut(s) 39, 733
BssNI GRCGYC 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 6 cut(s) 28, 550, 581, 705, 716, 1091
Bst6I CTCTTC 3 cut(s) 39, 76, 875
BstACI GRCGYC 1 cut(s) 96
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 2 cut(s) 388, 1292
BstDEI CTNAG 2 cut(s) 415, 614
BstDSI CCRYGG 1 cut(s) 27
BstF5I GGATG 1 cut(s) 1243
BstKTI GATC 2 cut(s) 42, 736
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 2 cut(s) 39, 733
BstMWI GCNNNNNNNGC 2 cut(s) 134, 767
BstNI CCWGG 1 cut(s) 12
BstNSI RCATGY 2 cut(s) 526, 637
BstSCI CCNGG 1 cut(s) 10
BstV1I GCAGC 6 cut(s) 124, 391, 775, 778, 1299, 1409
BstV2I GAAGAC 2 cut(s) 1260, 1346
BsuRI GGCC 1 cut(s) 10
BtgI CCRYGG 1 cut(s) 27
BtsCI GGATG 1 cut(s) 1243
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 3 cut(s) 328, 586, 1120
BveI ACCTGC 1 cut(s) 833
Cac8I GCNNGC 2 cut(s) 388, 1292
Cfr13I GGNCC 1 cut(s) 422
CseI GACGC 2 cut(s) 104, 479
Csp6I GTAC 2 cut(s) 1039, 1158
CviAII CATG 6 cut(s) 340, 523, 598, 634, 835, 1205
CviQI GTAC 2 cut(s) 1039, 1158
DdeI CTNAG 2 cut(s) 415, 614
DpnI GATC 2 cut(s) 41, 735
DpnII GATC 2 cut(s) 39, 733
DraI TTTAAA 1 cut(s) 1330
Eam1104I CTCTTC 3 cut(s) 39, 76, 875
EarI CTCTTC 3 cut(s) 39, 76, 875
Eco147I AGGCCT 1 cut(s) 10
Eco47I GGWCC 1 cut(s) 422
Eco57I CTGAAG 2 cut(s) 96, 977
Eco88I CYCGRG 2 cut(s) 279, 909
EcoRI GAATTC 1 cut(s) 751
EcoRII CCWGG 1 cut(s) 10
EcoT22I ATGCAT 1 cut(s) 1108
FaeI CATG 6 cut(s) 343, 526, 601, 637, 838, 1208
FalI AAGNNNNNCTT 2 cut(s) 668, 700
FaqI GGGAC 1 cut(s) 435
FatI CATG 6 cut(s) 339, 522, 597, 633, 834, 1204
Fnu4HI GCNGC 7 cut(s) 138, 405, 759, 789, 792, 1288, 1398
FokI GGATG 1 cut(s) 1230
Fsp4HI GCNGC 7 cut(s) 138, 405, 759, 789, 792, 1288, 1398
FspBI CTAG 3 cut(s) 224, 387, 542
GluI GCNGC 7 cut(s) 138, 405, 759, 789, 792, 1288, 1398
HaeIII GGCC 1 cut(s) 10
HgaI GACGC 2 cut(s) 104, 479
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 6 cut(s) 343, 526, 601, 637, 838, 1208
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HindIII AAGCTT 2 cut(s) 667, 1019
HinfI GANTC 5 cut(s) 68, 111, 431, 620, 723
HphI GGTGA 2 cut(s) 718, 1135
Hpy166II GTNNAC 3 cut(s) 430, 658, 701
Hpy188I TCNGA 9 cut(s) 76, 295, 379, 418, 502, 615, 738, 748, 926
Hpy188III TCNNGA 6 cut(s) 92, 205, 224, 347, 648, 950
Hpy8I GTNNAC 3 cut(s) 430, 658, 701
Hpy99I CGWCG 1 cut(s) 734
HpyAV CCTTC 5 cut(s) 109, 476, 551, 670, 1074
HpyCH4III ACNGT 6 cut(s) 28, 550, 581, 705, 716, 1091
HpyCH4IV ACGT 1 cut(s) 574
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 767
HpyF3I CTNAG 2 cut(s) 415, 614
HpySE526I ACGT 1 cut(s) 574
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 6 cut(s) 343, 526, 601, 637, 838, 1208
Kzo9I GATC 2 cut(s) 39, 733
LmnI GCTCC 4 cut(s) 380, 401, 862, 1118
Lsp1109I GCAGC 6 cut(s) 124, 391, 775, 778, 1299, 1409
LweI GCATC 3 cut(s) 506, 882, 1115
MaeI CTAG 3 cut(s) 224, 387, 542
MaeII ACGT 1 cut(s) 574
MaeIII GTNAC 3 cut(s) 544, 575, 1368
MalI GATC 2 cut(s) 41, 735
MboI GATC 2 cut(s) 39, 733
MhlI GDGCHC 1 cut(s) 1242
MluCI AATT 7 cut(s) 227, 286, 310, 751, 775, 795, 945
MlyI GAGTC 4 cut(s) 62, 120, 425, 629
MmeI TCCRAC 1 cut(s) 469
Mph1103I ATGCAT 1 cut(s) 1108
MroXI GAANNNNTTC 2 cut(s) 129, 1185
MseI TTAA 3 cut(s) 515, 1163, 1329
MslI CAYNNNNRTG 2 cut(s) 833, 1126
MspA1I CMGCKG 1 cut(s) 770
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 134, 767
NdeII GATC 2 cut(s) 39, 733
NheI GCTAGC 1 cut(s) 386
NlaIII CATG 6 cut(s) 343, 526, 601, 637, 838, 1208
NlaIV GGNNCC 1 cut(s) 423
NmuCI GTSAC 1 cut(s) 1368
NsiI ATGCAT 1 cut(s) 1108
NspI RCATGY 2 cut(s) 526, 637
PceI AGGCCT 1 cut(s) 10
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PdmI GAANNNNTTC 2 cut(s) 129, 1185
PfeI GAWTC 1 cut(s) 723
PflMI CCANNNNNTGG 1 cut(s) 603
PkrI GCNGC 7 cut(s) 139, 406, 760, 790, 793, 1289, 1399
PleI GAGTC 4 cut(s) 62, 119, 425, 628
PpsI GAGTC 4 cut(s) 62, 119, 425, 628
Ppu21I YACGTR 1 cut(s) 575
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 423
PspPI GGNCC 1 cut(s) 422
PsrI GAACNNNNNNTAC 2 cut(s) 154, 186
PvuII CAGCTG 1 cut(s) 770
RsaI GTAC 2 cut(s) 1040, 1159
RsaNI GTAC 2 cut(s) 1039, 1158
RseI CAYNNNNRTG 2 cut(s) 833, 1126
SaqAI TTAA 3 cut(s) 515, 1163, 1329
SatI GCNGC 7 cut(s) 138, 405, 759, 789, 792, 1288, 1398
Sau3AI GATC 2 cut(s) 39, 733
Sau96I GGNCC 1 cut(s) 422
ScaI AGTACT 1 cut(s) 1040
SchI GAGTC 4 cut(s) 62, 120, 425, 629
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 1242
SfaNI GCATC 3 cut(s) 506, 882, 1115
SinI GGWCC 1 cut(s) 422
SmiMI CAYNNNNRTG 2 cut(s) 833, 1126
SmlI CTYRAG 3 cut(s) 205, 806, 1022
SmoI CTYRAG 3 cut(s) 205, 806, 1022
Sse9I AATT 7 cut(s) 227, 286, 310, 751, 775, 795, 945
SseBI AGGCCT 1 cut(s) 10
SsiI CCGC 1 cut(s) 758
SspMI CTAG 3 cut(s) 224, 387, 542
StuI AGGCCT 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 6 cut(s) 28, 550, 581, 705, 716, 1091
TaiI ACGT 1 cut(s) 577
TaqI TCGA 5 cut(s) 42, 66, 102, 123, 568
TasI AATT 7 cut(s) 227, 286, 310, 751, 775, 795, 945
TatI WGTACW 1 cut(s) 1038
TauI GCSGC 1 cut(s) 761
TfiI GAWTC 1 cut(s) 723
Tru1I TTAA 3 cut(s) 515, 1163, 1329
Tru9I TTAA 3 cut(s) 515, 1163, 1329
TscAI CASTG 3 cut(s) 328, 586, 1120
TseFI GTSAC 1 cut(s) 1368
TseI GCWGC 6 cut(s) 137, 404, 788, 791, 1287, 1397
Tsp45I GTSAC 1 cut(s) 1368
TspDTI ATGAA 8 cut(s) 303, 495, 603, 614, 689, 1020, 1287, 1352
TspGWI ACGGA 1 cut(s) 1112
TspRI CASTG 3 cut(s) 328, 586, 1120
Van91I CCANNNNNTGG 1 cut(s) 603
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 4 cut(s) 286, 310, 751, 775
XbaI TCTAGA 1 cut(s) 223
XceI RCATGY 2 cut(s) 526, 637
XmnI GAANNNNTTC 2 cut(s) 129, 1185
XspI CTAG 3 cut(s) 224, 387, 542
ZrmI AGTACT 1 cut(s) 1040
Zsp2I ATGCAT 1 cut(s) 1108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.