Rmu_ssc0000274.1_g000004

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000274.1
OG0001798
Physical Location & Seq
Forward (+)
13966 .. 19072
5107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000274.1_g000004.1.cds

Sequence Viewer

Length: 627 bp
atgatgattattgatagaagatggattatggagcttgacttgtcgaagaagacagcagaaatgcaagggtctactacaagagcagatggtgtcagaagtcctctgctggagatggttctgtatgagctaacttacgataaggatattctttccacatttcttcagaccaacgccatctgtgcagccgagcaggacgtgctgccaccgatcagcaagacacccactggtcgcagttgtggtcttctccctgcatctggacatctgcccccaaaggaaaagaaggccgcaacaatgaataagaagaggaagcacaatgaggaagttggtagatccaaaaatcagtccaagaaggaaaataaacagtccttcaccaagaatgaattgaggcagaaagcaaaagagagggcagagtacctaaggaaaaagatggctgccttgaagggatcgaggttggaagaagataggtctgccccaaagccatcaagggctaaacaagctacatctgctaagcaaagttcaagggctgtaccagctgcatctgcttctccttcttcaaggcctatgcaagctgcatctgccccatcaggttcaaggcctgtccaaccttcaaaggcatcaaggaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.95

Weight (kDa)

10.24

Isoelectric Point (pI)

77.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 71
AciI CCGC 1 cut(s) 285
AclWI GGATC 2 cut(s) 324, 451
AcuI CTGAAG 1 cut(s) 146
AfaI GTAC 2 cut(s) 413, 528
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 5 cut(s) 439, 519, 555, 591, 609
AjiI CACGTC 1 cut(s) 196
AluBI AGCT 5 cut(s) 34, 127, 497, 533, 569
AluI AGCT 5 cut(s) 34, 127, 497, 533, 569
AlwI GGATC 2 cut(s) 324, 451
AoxI GGCC 3 cut(s) 282, 557, 593
ApeKI GCWGC 5 cut(s) 182, 199, 431, 533, 569
AsuHPI GGTGA 1 cut(s) 361
AxyI CCTNAGG 1 cut(s) 416
BbsI GAAGAC 2 cut(s) 56, 233
BbvI GCAGC 5 cut(s) 186, 194, 418, 520, 556
BccI CCATC 7 cut(s) 15, 80, 106, 182, 421, 487, 589
BisI GCNGC 6 cut(s) 183, 200, 285, 432, 534, 570
BlpI GCTNAGC 1 cut(s) 507
BlsI GCNGC 6 cut(s) 184, 201, 286, 433, 535, 571
BmgBI CACGTC 1 cut(s) 196
BmsI GCATC 4 cut(s) 260, 545, 581, 623
BpiI GAAGAC 2 cut(s) 56, 233
BpmI CTGGAG 1 cut(s) 128
Bpu1102I GCTNAGC 1 cut(s) 507
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 229
Bse21I CCTNAGG 1 cut(s) 416
BseLI CCNNNNNNNGG 1 cut(s) 254
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 5 cut(s) 186, 194, 418, 520, 556
BsgI GTGCAG 1 cut(s) 201
BshFI GGCC 3 cut(s) 284, 559, 595
BslI CCNNNNNNNGG 1 cut(s) 254
BsnI GGCC 3 cut(s) 284, 559, 595
Bsp143I GATC 3 cut(s) 207, 329, 443
Bsp1720I GCTNAGC 1 cut(s) 507
BspACI CCGC 1 cut(s) 285
BspANI GGCC 3 cut(s) 284, 559, 595
BspPI GGATC 2 cut(s) 324, 451
BsrI ACTGG 1 cut(s) 229
BssMI GATC 3 cut(s) 207, 329, 443
Bst4CI ACNGT 1 cut(s) 363
Bst6I CTCTTC 1 cut(s) 296
BstAPI GCANNNNNTGC 1 cut(s) 196
BstC8I GCNNGC 1 cut(s) 567
BstDEI CTNAG 2 cut(s) 416, 507
BstKTI GATC 3 cut(s) 210, 332, 446
BstMBI GATC 3 cut(s) 207, 329, 443
BstMWI GCNNNNNNNGC 7 cut(s) 179, 196, 494, 503, 530, 539, 575
BstV1I GCAGC 5 cut(s) 186, 194, 418, 520, 556
BstV2I GAAGAC 2 cut(s) 56, 233
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
Bsu36I CCTNAGG 1 cut(s) 416
BsuRI GGCC 3 cut(s) 284, 559, 595
BtrI CACGTC 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 222
Cac8I GCNNGC 1 cut(s) 567
Csp6I GTAC 2 cut(s) 412, 527
CviQI GTAC 2 cut(s) 412, 527
DdeI CTNAG 2 cut(s) 416, 507
DpnI GATC 3 cut(s) 209, 331, 445
DpnII GATC 3 cut(s) 207, 329, 443
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco147I AGGCCT 2 cut(s) 559, 595
Eco57I CTGAAG 1 cut(s) 146
Eco81I CCTNAGG 1 cut(s) 416
FaiI YATR 3 cut(s) 29, 123, 563
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 6 cut(s) 183, 200, 285, 432, 534, 570
Fsp4HI GCNGC 6 cut(s) 183, 200, 285, 432, 534, 570
GluI GCNGC 6 cut(s) 183, 200, 285, 432, 534, 570
GsuI CTGGAG 1 cut(s) 128
HaeIII GGCC 3 cut(s) 284, 559, 595
HphI GGTGA 1 cut(s) 361
Hpy166II GTNNAC 1 cut(s) 72
Hpy188I TCNGA 2 cut(s) 95, 165
Hpy188III TCNNGA 1 cut(s) 255
Hpy8I GTNNAC 1 cut(s) 72
HpyAV CCTTC 6 cut(s) 274, 343, 376, 433, 558, 615
HpyCH4III ACNGT 1 cut(s) 363
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 6 cut(s) 64, 182, 251, 536, 565, 572
HpyF10VI GCNNNNNNNGC 7 cut(s) 179, 196, 494, 503, 530, 539, 575
HpyF3I CTNAG 2 cut(s) 416, 507
HpySE526I ACGT 1 cut(s) 195
Kzo9I GATC 3 cut(s) 207, 329, 443
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 8 cut(s) 92, 176, 210, 240, 261, 543, 570, 609
Lsp1109I GCAGC 5 cut(s) 186, 194, 418, 520, 556
LweI GCATC 4 cut(s) 260, 545, 581, 623
MaeII ACGT 1 cut(s) 195
MalI GATC 3 cut(s) 209, 331, 445
MboI GATC 3 cut(s) 207, 329, 443
MboII GAAGA 9 cut(s) 30, 58, 61, 152, 233, 313, 467, 470, 543
MflI RGATCY 1 cut(s) 329
MluCI AATT 1 cut(s) 380
MmeI TCCRAC 2 cut(s) 432, 625
MnlI CCTC 6 cut(s) 111, 297, 310, 378, 396, 441
MspA1I CMGCKG 1 cut(s) 533
MwoI GCNNNNNNNGC 7 cut(s) 179, 196, 494, 503, 530, 539, 575
NdeII GATC 3 cut(s) 207, 329, 443
NmeAIII GCCGAG 1 cut(s) 211
PceI AGGCCT 2 cut(s) 559, 595
PkrI GCNGC 6 cut(s) 184, 201, 286, 433, 535, 571
PsuI RGATCY 1 cut(s) 329
PvuII CAGCTG 1 cut(s) 533
RsaI GTAC 2 cut(s) 413, 528
RsaNI GTAC 2 cut(s) 412, 527
SatI GCNGC 6 cut(s) 183, 200, 285, 432, 534, 570
Sau3AI GATC 3 cut(s) 207, 329, 443
SfaNI GCATC 4 cut(s) 260, 545, 581, 623
Sse9I AATT 1 cut(s) 380
SseBI AGGCCT 2 cut(s) 559, 595
SsiI CCGC 1 cut(s) 285
StuI AGGCCT 2 cut(s) 559, 595
TaaI ACNGT 1 cut(s) 363
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 44, 446
TasI AATT 1 cut(s) 380
TauI GCSGC 1 cut(s) 287
TscAI CASTG 1 cut(s) 229
TseI GCWGC 5 cut(s) 182, 199, 431, 533, 569
TspDTI ATGAA 2 cut(s) 308, 393
TspRI CASTG 1 cut(s) 229
XmiI GTMKAC 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.