Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0001798

Physical Location & Seq

Genomic Coordinates Reverse (-)

37546359 .. 37548249

Gene Structure 1891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1285900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGGGAAGCCCGGCAGTACGAGAAACGTGGGAGGAATCGAAGAGAACATATTAGCGATCCTCGGTTCTTCCGAAGCTAAAGACAATCAGGACGCCTACGAGGATAGAATCACTTTTCTCGAAGCCGTTCGTGCTGCTTCCATTTCTTCTGATGCAGATAAATCAAAATCATCCAGTAGCGTGCCTGAATTAATCGTGGTTGAAGAGGCTTGGTTTCCATTTGCCTTCAGCTCTGAAATCGCTAGTAACGAAAAGGGAGCTGCTAACTACTCCGGGAGACCAGTTGACTCATATAGTTTCCAACTTTTGATACAAGAACTTGTTGATGCAACTGGTGAAGCAAACTTCCAAGCATCAGAAACAAAGTCCTTGGCAAAGATGCTATTGTTTCTATACCTATTTAATGTTTTGGAATGGGATTTTCTACCACGTACCCGTATCTATAAAGAAACCATGAACTGGGTAGTTCTGAGAGAGTCATTACTCAACATGCTTCTGGTATCAAGGAAGGTAAACCACAAAAGCTTGATGAAAGATTGCTTGACCATTATGTGTAACCTGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

21.05

Weight (kDa)

4.93

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18470
fragaria_vesca	FvH4_3g08270 FvH4_3g08270 FvH4_3g08270 FvH4_3g08270 FvH4_3g08270 FvH4_3g08270 FvH4_7g02070 FvH4_7g02070
malus_domestica	MD05G1306600.v1.1 MD10G1285700.v1.1 MD10G1285800.v1.1 MD10G1285900.v1.1
prunus_persica	Prupe.4G055900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115591 RchiOBHm_Chr3g0476981 RchiOBHm_Chr3g0477111 RchiOBHm_Chr4g0432891 RchiOBHm_Chr5g0009801
rosa_laevigata	RLG00000031701
rosa_multiflora	Rmu_sc0000288.1_g000020 Rmu_sc0008691.1_g000001 Rmu_sc0014848.1_g000001 Rmu_sc0023367.1_g000006 Rmu_ssc0000274.1_g000004
rosa_roxburghii	Rroxscaffold_1G00066390 Rroxscaffold_6G00404420 Rroxscaffold_6G00404900
rosa_rugosa	Rorug03G0158000 Rorug04G0445900 Rorug05G0241800
rosa_samantha	Rh2BG457800 Rh2DG467500 Rh3AG208000 Rh3AG208100 Rh3BG241000 Rh3BG242100 Rh3CG235600 Rh3DG234300 Rh5AG077400 Rh5AG529000 Rh5BG072500 Rh5CG084900 Rh5DG073000
rosa_wichuraiana	Rw3G018980 Rw3G018990 Rw5G007130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	459
AclWI	GGATC	1 cut(s)	52
AcuI	CTGAAG	1 cut(s)	211
AcyI	GRCGYC	1 cut(s)	93
AfaI	GTAC	2 cut(s)	19, 433
AfiI	CCNNNNNNNGG	1 cut(s)	459
AgsI	TTSAA	1 cut(s)	203
AluBI	AGCT	4 cut(s)	77, 231, 260, 525
AluI	AGCT	4 cut(s)	77, 231, 260, 525
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	1 cut(s)	52
ApeKI	GCWGC	2 cut(s)	134, 260
AseI	ATTAAT	1 cut(s)	191
Asp700I	GAANNNNTTC	1 cut(s)	126
AsuC2I	CCSGG	2 cut(s)	12, 274
AsuHPI	GGTGA	1 cut(s)	347
BbvI	GCAGC	2 cut(s)	121, 247
BceAI	ACGGC	1 cut(s)	110
BcnI	CCSGG	2 cut(s)	12, 274
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	1 cut(s)	243
BisI	GCNGC	2 cut(s)	135, 261
BlsI	GCNGC	2 cut(s)	136, 262
Bme1390I	CCNGG	2 cut(s)	12, 274
BmrFI	CCNGG	2 cut(s)	12, 274
BmrI	ACTGGG	1 cut(s)	469
BmsI	GCATC	4 cut(s)	142, 316, 362, 369
BmuI	ACTGGG	1 cut(s)	469
BpuMI	CCSGG	2 cut(s)	12, 274
BsaAI	YACGTR	1 cut(s)	431
BsaHI	GRCGYC	1 cut(s)	93
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	2 cut(s)	61, 369
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	4 cut(s)	174, 281, 337, 464
BseDI	CCNNGG	2 cut(s)	61, 369
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	461
BseNI	ACTGG	4 cut(s)	174, 281, 337, 464
BseXI	GCAGC	2 cut(s)	121, 247
BsiSI	CCGG	2 cut(s)	12, 273
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	1 cut(s)	271
Bso31I	GGTCTC	1 cut(s)	271
Bsp143I	GATC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	462
BspPI	GGATC	1 cut(s)	52
BspTNI	GGTCTC	1 cut(s)	271
BsrI	ACTGG	4 cut(s)	174, 281, 337, 464
BssECI	CCNNGG	2 cut(s)	61, 369
BssMI	GATC	1 cut(s)	57
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	369
Bst6I	CTCTTC	2 cut(s)	36, 198
BstACI	GRCGYC	1 cut(s)	93
BstBAI	YACGTR	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	470
BstF5I	GGATG	1 cut(s)	170
BstKTI	GATC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	1 cut(s)	57
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	493
BstSCI	CCNGG	2 cut(s)	10, 272
BstV1I	GCAGC	2 cut(s)	121, 247
BtsCI	GGATG	1 cut(s)	170
Cac8I	GCNNGC	1 cut(s)	182
CseI	GACGC	1 cut(s)	101
Csp6I	GTAC	2 cut(s)	18, 432
CviAII	CATG	2 cut(s)	454, 490
CviJI	RGCY	7 cut(s)	10, 77, 125, 209, 231, 260, 525
CviKI_1	RGCY	7 cut(s)	10, 77, 125, 209, 231, 260, 525
CviQI	GTAC	2 cut(s)	18, 432
DdeI	CTNAG	1 cut(s)	470
DpnI	GATC	1 cut(s)	59
DpnII	GATC	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	36, 198
EarI	CTCTTC	2 cut(s)	36, 198
Eco130I	CCWWGG	1 cut(s)	369
Eco31I	GGTCTC	1 cut(s)	271
Eco57I	CTGAAG	1 cut(s)	211
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
FaeI	CATG	2 cut(s)	457, 493
FaiI	YATR	8 cut(s)	50, 292, 294, 394, 444, 455, 491, 551
FatI	CATG	2 cut(s)	453, 489
Fnu4HI	GCNGC	2 cut(s)	135, 261
FokI	GGATG	1 cut(s)	157
Fsp4HI	GCNGC	2 cut(s)	135, 261
FspBI	CTAG	1 cut(s)	243
GluI	GCNGC	2 cut(s)	135, 261
HapII	CCGG	2 cut(s)	12, 273
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	93
Hin1II	CATG	2 cut(s)	457, 493
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	523
HinfI	GANTC	4 cut(s)	36, 108, 287, 476
HpaII	CCGG	2 cut(s)	12, 273
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	2 cut(s)	286, 514
Hpy188I	TCNGA	5 cut(s)	73, 151, 235, 358, 471
Hpy188III	TCNNGA	2 cut(s)	89, 119
Hpy8I	GTNNAC	2 cut(s)	286, 514
HpyAV	CCTTC	2 cut(s)	235, 502
HpyCH4IV	ACGT	2 cut(s)	27, 430
HpyCH4V	TGCA	2 cut(s)	155, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpyF3I	CTNAG	1 cut(s)	470
HpySE526I	ACGT	2 cut(s)	27, 430
Hsp92I	GRCGYC	1 cut(s)	93
Hsp92II	CATG	2 cut(s)	457, 493
Kzo9I	GATC	1 cut(s)	57
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	9 cut(s)	25, 74, 187, 198, 286, 294, 318, 445, 482
Lsp1109I	GCAGC	2 cut(s)	121, 247
LweI	GCATC	4 cut(s)	142, 316, 362, 369
MaeI	CTAG	1 cut(s)	243
MaeII	ACGT	2 cut(s)	27, 430
MaeIII	GTNAC	2 cut(s)	245, 554
MalI	GATC	1 cut(s)	59
MboI	GATC	1 cut(s)	57
MboII	GAAGA	4 cut(s)	53, 60, 138, 215
MluCI	AATT	1 cut(s)	188
MlyI	GAGTC	2 cut(s)	281, 485
MmeI	TCCRAC	1 cut(s)	325
MnlI	CCTC	4 cut(s)	26, 71, 94, 199
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	3 cut(s)	191, 402, 565
MspI	CCGG	2 cut(s)	12, 273
MspR9I	CCNGG	2 cut(s)	12, 274
MwoI	GCNNNNNNNGC	1 cut(s)	131
NciI	CCSGG	2 cut(s)	12, 274
NdeII	GATC	1 cut(s)	57
NlaIII	CATG	2 cut(s)	457, 493
NspI	RCATGY	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 246
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	2 cut(s)	36, 108
PflMI	CCANNNNNTGG	1 cut(s)	459
PfoI	TCCNGGA	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	136, 262
PleI	GAGTC	2 cut(s)	281, 484
PpsI	GAGTC	2 cut(s)	281, 484
Ppu21I	YACGTR	1 cut(s)	431
PshBI	ATTAAT	1 cut(s)	191
RsaI	GTAC	2 cut(s)	19, 433
RsaNI	GTAC	2 cut(s)	18, 432
SaqAI	TTAA	3 cut(s)	191, 402, 565
SatI	GCNGC	2 cut(s)	135, 261
Sau3AI	GATC	1 cut(s)	57
SchI	GAGTC	2 cut(s)	281, 485
ScrFI	CCNGG	2 cut(s)	12, 274
SetI	ASST	9 cut(s)	30, 79, 233, 262, 399, 433, 513, 527, 561
SfaNI	GCATC	4 cut(s)	142, 316, 362, 369
Sse9I	AATT	1 cut(s)	188
SspMI	CTAG	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	10, 272
StyI	CCWWGG	1 cut(s)	369
TaiI	ACGT	2 cut(s)	30, 433
TaqI	TCGA	2 cut(s)	39, 120
TasI	AATT	1 cut(s)	188
TfiI	GAWTC	2 cut(s)	36, 108
Tru1I	TTAA	3 cut(s)	191, 402, 565
Tru9I	TTAA	3 cut(s)	191, 402, 565
TseI	GCWGC	2 cut(s)	134, 260
TspDTI	ATGAA	2 cut(s)	470, 545
Van91I	CCANNNNNTGG	1 cut(s)	459
VspI	ATTAAT	1 cut(s)	191
XceI	RCATGY	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.