Rw3G018990

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001798
Physical Location & Seq
Forward (+)
21392796 .. 21395808
3013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018990.1

Sequence Viewer

Length: 660 bp
ATGGATGAAATGGTGCTTTCCTCGATGCCGATCTTCGCCATCTTAAGGATTGGAAAATCTCTGGCAAGTTTTAAGCTTTTGAATGAGTTAGATAAGTGTTTCCCTCGGGTGCATTTGTCTGTTGTTGATGAAATGAAATCGTCCAGCTTGTCGCCATTTGTTTTCAGCTTTGAAAGTACTAGTAGCGAGAGGGAAGCTGCTAATAACCCTGGGGGATCAGTTGACTCCGCTGTATCAAGAAAGATAAACTACAAAAACTTGATGAAGGATTATTGCTTGGCCATTATGTGTAAGCTGTATCAAACCAATGCTGGATTCACTGATGATCTGATAAGTTCAGAGAAGTCTATGGCACAACCAGCTGAAAATTTTGATACTGCTGCTACAATTGCTTTAATTGAGATAGGAAAGAATACCTGTATAGCCATGCAGAAGTTTCTGATAATGATTATGGAGCTTGTCTTGTCGAAGAAGACAGCAGAATTGCAAGGGTCTACTACAAGAGCAGATGGTGTCAGAACTCCTTTGCTGGAGATAGTTCTGGACGAGCTAACTTACGATAAGGATATTCTTGACTCATTTCTTCAGTCTGAAGCATATGTTACAGTCAGTGTGTTTGACTACAAACGGAACATGTTTGATATCTCCCTTAAACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

219

Amino Acids

24.43

Weight (kDa)

4.95

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 494
AciI CCGC 1 cut(s) 228
AclWI GGATC 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 279
AcsI RAATTY 1 cut(s) 367
AcuI CTGAAG 2 cut(s) 569, 612
AfaI GTAC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 45
AflII CTTAAG 1 cut(s) 43
AflIII ACRYGT 1 cut(s) 633
AgsI TTSAA 2 cut(s) 82, 173
AhlI ACTAGT 1 cut(s) 179
AjnI CCWGG 1 cut(s) 208
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 8 cut(s) 76, 147, 168, 197, 295, 362, 457, 550
AluI AGCT 8 cut(s) 76, 147, 168, 197, 295, 362, 457, 550
AlwI GGATC 1 cut(s) 223
Ama87I CYCGRG 1 cut(s) 105
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 2 cut(s) 197, 380
ApoI RAATTY 1 cut(s) 367
AvaI CYCGRG 1 cut(s) 105
BalI TGGCCA 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 479
BbvI GCAGC 2 cut(s) 184, 367
BccI CCATC 2 cut(s) 47, 503
BciT130I CCWGG 1 cut(s) 210
BcuI ACTAGT 1 cut(s) 179
BfaI CTAG 1 cut(s) 180
BfrI CTTAAG 1 cut(s) 43
BisI GCNGC 2 cut(s) 198, 381
BlsI GCNGC 2 cut(s) 199, 382
BmcAI AGTACT 1 cut(s) 178
Bme1390I CCNGG 1 cut(s) 210
BmeT110I CYCGRG 1 cut(s) 105
BmrFI CCNGG 1 cut(s) 210
BmsI GCATC 1 cut(s) 15
BpiI GAAGAC 1 cut(s) 479
BpmI CTGGAG 1 cut(s) 551
BsaBI GATNNNNATC 1 cut(s) 29
BsaJI CCNNGG 3 cut(s) 104, 208, 209
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse8I GATNNNNATC 1 cut(s) 29
BseBI CCWGG 1 cut(s) 210
BseDI CCNNGG 3 cut(s) 104, 208, 209
BseGI GGATG 1 cut(s) 10
BseJI GATNNNNATC 1 cut(s) 29
BseLI CCNNNNNNNGG 1 cut(s) 45
BseXI GCAGC 2 cut(s) 184, 367
BshFI GGCC 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 45
BsnI GGCC 1 cut(s) 281
BsoBI CYCGRG 1 cut(s) 105
Bsp143I GATC 3 cut(s) 30, 215, 325
BspACI CCGC 1 cut(s) 228
BspANI GGCC 1 cut(s) 281
BspPI GGATC 1 cut(s) 223
BspTI CTTAAG 1 cut(s) 43
BssECI CCNNGG 3 cut(s) 104, 208, 209
BssMI GATC 3 cut(s) 30, 215, 325
Bst2UI CCWGG 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 607
BstAFI CTTAAG 1 cut(s) 43
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 33, 218, 328
BstMBI GATC 3 cut(s) 30, 215, 325
BstMWI GCNNNNNNNGC 2 cut(s) 359, 389
BstNI CCWGG 1 cut(s) 210
BstNSI RCATGY 1 cut(s) 637
BstSCI CCNGG 1 cut(s) 208
BstV1I GCAGC 2 cut(s) 184, 367
BstV2I GAAGAC 1 cut(s) 479
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 318, 616
Csp6I GTAC 1 cut(s) 177
CviAII CATG 2 cut(s) 427, 634
CviQI GTAC 1 cut(s) 177
DpnI GATC 3 cut(s) 32, 217, 327
DpnII GATC 3 cut(s) 30, 215, 325
EaeI YGGCCR 1 cut(s) 279
Eco32I GATATC 1 cut(s) 643
Eco57I CTGAAG 2 cut(s) 569, 612
Eco88I CYCGRG 1 cut(s) 105
EcoRII CCWGG 1 cut(s) 208
EcoRV GATATC 1 cut(s) 643
FaeI CATG 2 cut(s) 430, 637
FaiI YATR 8 cut(s) 287, 350, 422, 428, 452, 598, 600, 635
FatI CATG 2 cut(s) 426, 633
FauNDI CATATG 1 cut(s) 598
FblI GTMKAC 1 cut(s) 494
Fnu4HI GCNGC 2 cut(s) 198, 381
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 2 cut(s) 198, 381
FspBI CTAG 1 cut(s) 180
GluI GCNGC 2 cut(s) 198, 381
GsuI CTGGAG 1 cut(s) 551
HaeIII GGCC 1 cut(s) 281
Hin1II CATG 2 cut(s) 430, 637
HincII GTYRAC 1 cut(s) 223
HindII GTYRAC 1 cut(s) 223
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 3 cut(s) 224, 315, 575
Hpy166II GTNNAC 2 cut(s) 223, 495
Hpy188I TCNGA 5 cut(s) 330, 340, 441, 518, 592
Hpy188III TCNNGA 3 cut(s) 237, 542, 572
Hpy8I GTNNAC 2 cut(s) 223, 495
HpyAV CCTTC 1 cut(s) 259
HpyCH4III ACNGT 1 cut(s) 607
HpyCH4V TGCA 3 cut(s) 112, 430, 487
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 389
Hsp92II CATG 2 cut(s) 430, 637
Kzo9I GATC 3 cut(s) 30, 215, 325
LmnI GCTCC 1 cut(s) 454
LpnPI CCDG 9 cut(s) 47, 157, 195, 222, 297, 372, 430, 515, 527
Lsp1109I GCAGC 2 cut(s) 184, 367
LweI GCATC 1 cut(s) 15
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 1 cut(s) 601
MalI GATC 3 cut(s) 32, 217, 327
MboI GATC 3 cut(s) 30, 215, 325
MboII GAAGA 4 cut(s) 25, 481, 484, 575
MfeI CAATTG 1 cut(s) 387
MlsI TGGCCA 1 cut(s) 281
MluCI AATT 4 cut(s) 367, 387, 396, 482
MluNI TGGCCA 1 cut(s) 281
MlyI GAGTC 2 cut(s) 218, 569
MnlI CCTC 3 cut(s) 31, 114, 183
Mox20I TGGCCA 1 cut(s) 281
MscI TGGCCA 1 cut(s) 281
MseI TTAA 5 cut(s) 44, 72, 395, 651, 658
Msp20I TGGCCA 1 cut(s) 281
MspA1I CMGCKG 2 cut(s) 230, 362
MspCI CTTAAG 1 cut(s) 43
MspR9I CCNGG 1 cut(s) 210
MunI CAATTG 1 cut(s) 387
MvaI CCWGG 1 cut(s) 210
MwoI GCNNNNNNNGC 2 cut(s) 359, 389
NdeI CATATG 1 cut(s) 598
NdeII GATC 3 cut(s) 30, 215, 325
NlaIII CATG 2 cut(s) 430, 637
NspI RCATGY 1 cut(s) 637
PasI CCCWGGG 1 cut(s) 209
PciI ACATGT 1 cut(s) 633
PfeI GAWTC 1 cut(s) 315
PkrI GCNGC 2 cut(s) 199, 382
PleI GAGTC 2 cut(s) 218, 569
PpsI GAGTC 2 cut(s) 218, 569
PscI ACATGT 1 cut(s) 633
Psp6I CCWGG 1 cut(s) 208
PspGI CCWGG 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 362
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SaqAI TTAA 5 cut(s) 44, 72, 395, 651, 658
SatI GCNGC 2 cut(s) 198, 381
Sau3AI GATC 3 cut(s) 30, 215, 325
ScaI AGTACT 1 cut(s) 178
SchI GAGTC 2 cut(s) 218, 569
ScrFI CCNGG 1 cut(s) 210
SetI ASST 9 cut(s) 78, 149, 170, 199, 297, 364, 419, 459, 552
SfaNI GCATC 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 43
SmoI CTYRAG 1 cut(s) 43
SpeI ACTAGT 1 cut(s) 179
Sse9I AATT 4 cut(s) 367, 387, 396, 482
SsiI CCGC 1 cut(s) 228
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 208
TaaI ACNGT 1 cut(s) 607
TaqI TCGA 2 cut(s) 23, 467
TasI AATT 4 cut(s) 367, 387, 396, 482
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 1 cut(s) 315
Tru1I TTAA 5 cut(s) 44, 72, 395, 651, 658
Tru9I TTAA 5 cut(s) 44, 72, 395, 651, 658
TscAI CASTG 2 cut(s) 325, 616
TseI GCWGC 2 cut(s) 197, 380
TspDTI ATGAA 4 cut(s) 21, 144, 149, 278
TspGWI ACGGA 1 cut(s) 643
TspRI CASTG 2 cut(s) 325, 616
Vha464I CTTAAG 1 cut(s) 43
XapI RAATTY 1 cut(s) 367
XceI RCATGY 1 cut(s) 637
XmiI GTMKAC 1 cut(s) 494
XspI CTAG 1 cut(s) 180
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.