RchiOBHm_Chr5g0009801

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001798
Physical Location & Seq
Forward (+)
6485723 .. 6491410
5688 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29065

Sequence Viewer

Length: 1419 bp
ATGGAGAACCCTAGCAGTAAGAGAACCACCGCCGGAGCTCTCGAAGAGAACATCTTGGCCATCCTCGACTCCACCGAAGCCGACGACACTCACTACGCCAACGACGACCGAACTTCTTTCCTCGACGCCGTTCGTGCCGCTTCGCTTGTACCCGAAAATGGAACTCCACCTACCTTTAAATGGTTTGAGTCGATCTTCGCCATCTTGAGGATTGGGAAATCTCTGGAGCTGACTATGGCAAGTTTTAAGCTTTTGAATGAGTTGGATAAGTGTTTCCCTCGGGTGCATTTGTCTGTTGTTGATGAAATGAAATCGTCTGGTAAAGTCATGTTAATCGTGGAGAATGAGGCTTGGTCGCCATTTGTTTTCAGCTCCGAAAGTACTAGTAGCGAGAGGGGAGCTGCTAATAACTTGGGGGGATCAGTTGACTCCTCTGGTTTCCAACATTTGATAGAAGACCTTGCTGATGCAACCGCTGAACCAAACTTCCAAGCCTCAGAAACAAAGTCCCTAGGAAACATGTTGCTGTTTCAATACCTAGTCAATGTTCTTGAAGGAGATTTTCAACCTCGCAACTGTGTCTATGCAGAAACTGCAAACTGGGTCCTTCTGAGAGAGTCTTTGCTCAACATGCTTTTGGTATCAAGAAAGATAAACTACAAAAACTTGATGAAGGATTGCTTGGCCATTATGTGTAAGCTGTATCGAACCAATGCTGGATTTGCTGATGATCTGGTAAGTTCAGAGACGTCTATGGCACAACCAGCTGAAAATTTTGATACGGCTGCTACAATTGCTTTACTTGAGATAGGAAAGAATACCTGTATAGCCATGCAGAAGTTTCTGATAATGATTATGGAGCTTGACTTGTCGAAGAAGACAGCAGAAATGCAAGGGTCTACTACAAGAGCAGATGGTGTCAGAACTCCTCTGCTGGAGATAGTTCTGGATGAGCTAACTTACGATAAGGATATTCTTGACTCATTTCTTCAGGTTTTCAATGAACCTAAATGGAAGCTTGAGATAGTTGTGCAGTATTTGTGGAAATACATTGGTAAGCCTTCTGTTCGAACTCGTAGAGCAAATGGTCCTACAGATGATGCATCATTCAATGGAGCATTGAAGTGCTTTTCAAATGTCACCAGCATAAAAACCACCATAAAAAAGATTAGGCCAGAACTAGCTCAGTTGCTTTTAGCACATGGCCTTCAGGCTCATTTATCCTTACCATGTAAACAACATGTCGAAGGCACCTCTGCTTCCAGTGAAGAAAGAAGTAACAGCTCCCTCATTGAAGTATCTGAGAATATAATATCTGCATTTAGAAATCTGAAGACTGCGGACAAGAAGATGGAGATTTTGCCACTTGGAAAAGAAGCACTGTTTATGGCAGCTACTATCATATCAGCGCAGTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

472

Amino Acids

52.26

Weight (kDa)

5.15

Isoelectric Point (pI)

34.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 752
AccB1I GGYRCC 1 cut(s) 1250
AccI GTMKAC 1 cut(s) 899
AciI CCGC 4 cut(s) 30, 138, 474, 1340
AclWI GGATC 1 cut(s) 427
AcoI YGGCCR 2 cut(s) 57, 684
AcsI RAATTY 1 cut(s) 772
AcuI CTGAAG 3 cut(s) 974, 1193, 1352
AcyI GRCGYC 2 cut(s) 126, 749
AfaI GTAC 2 cut(s) 150, 382
AfiI CCNNNNNNNGG 3 cut(s) 158, 180, 207
AflIII ACRYGT 2 cut(s) 519, 1240
AgsI TTSAA 9 cut(s) 256, 533, 554, 566, 1000, 1111, 1123, 1134, 1295
AhlI ACTAGT 1 cut(s) 383
AjuI GAANNNNNNNTTGG 2 cut(s) 665, 697
AloI GAACNNNNNNTCC 2 cut(s) 471, 503
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 740
AlwI GGATC 1 cut(s) 427
AlwNI CAGNNNCTG 1 cut(s) 593
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 4 cut(s) 57, 684, 1172, 1204
ApeKI GCWGC 3 cut(s) 401, 785, 1391
ApoI RAATTY 1 cut(s) 772
AspA2I CCTAGG 1 cut(s) 511
AspLEI GCGC 1 cut(s) 1411
AspS9I GGNCC 2 cut(s) 604, 1088
AsuHPI GGTGA 1 cut(s) 1132
AsuII TTCGAA 1 cut(s) 1069
AvaI CYCGRG 1 cut(s) 279
AvaII GGWCC 2 cut(s) 604, 1088
AvrII CCTAGG 1 cut(s) 511
BalI TGGCCA 2 cut(s) 59, 686
BanI GGYRCC 1 cut(s) 1250
BanII GRGCYC 1 cut(s) 40
BbsI GAAGAC 3 cut(s) 462, 884, 1340
Bbv12I GWGCWC 1 cut(s) 40
BbvI GCAGC 3 cut(s) 388, 772, 1403
BccI CCATC 4 cut(s) 68, 209, 908, 1345
BceAI ACGGC 2 cut(s) 113, 798
BcoDI GTCTC 1 cut(s) 740
BcuI ACTAGT 1 cut(s) 383
BfaI CTAG 5 cut(s) 12, 384, 512, 539, 1181
BfmI CTRYAG 1 cut(s) 1092
BisI GCNGC 4 cut(s) 138, 402, 786, 1392
BlnI CCTAGG 1 cut(s) 511
BlsI GCNGC 4 cut(s) 139, 403, 787, 1393
BmcAI AGTACT 1 cut(s) 382
Bme18I GGWCC 2 cut(s) 604, 1088
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 2 cut(s) 604, 1088
BmiI GGNNCC 2 cut(s) 605, 1252
BmrI ACTGGG 1 cut(s) 610
BmsI GCATC 3 cut(s) 457, 1090, 1112
BmuI ACTGGG 1 cut(s) 610
BpiI GAAGAC 3 cut(s) 462, 884, 1340
BpmI CTGGAG 2 cut(s) 245, 956
Bpu14I TTCGAA 1 cut(s) 1069
BpuEI CTTGAG 3 cut(s) 226, 824, 1040
BsaHI GRCGYC 2 cut(s) 126, 749
BsaJI CCNNGG 2 cut(s) 278, 511
Bsc4I CCNNNNNNNGG 3 cut(s) 158, 180, 207
Bse1I ACTGG 2 cut(s) 605, 1263
BseDI CCNNGG 2 cut(s) 278, 511
BseGI GGATG 2 cut(s) 60, 955
BseLI CCNNNNNNNGG 3 cut(s) 158, 180, 207
BseMII CTCAG 4 cut(s) 510, 602, 1199, 1293
BseNI ACTGG 2 cut(s) 605, 1263
BseRI GAGGAG 2 cut(s) 421, 918
BseXI GCAGC 3 cut(s) 388, 772, 1403
BsgI GTGCAG 1 cut(s) 1052
Bsh1285I CGRYCG 1 cut(s) 109
BshFI GGCC 4 cut(s) 59, 686, 1174, 1206
BshNI GGYRCC 1 cut(s) 1250
BsiEI CGRYCG 1 cut(s) 109
BsiHKAI GWGCWC 1 cut(s) 40
BsiHKCI CYCGRG 1 cut(s) 279
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 1 cut(s) 493
BslI CCNNNNNNNGG 3 cut(s) 158, 180, 207
BsmAI GTCTC 1 cut(s) 740
BsmBI CGTCTC 1 cut(s) 740
BsmFI GGGAC 1 cut(s) 493
BsnI GGCC 4 cut(s) 59, 686, 1174, 1206
BsoBI CYCGRG 1 cut(s) 279
Bsp119I TTCGAA 1 cut(s) 1069
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 192, 419, 730
BspACI CCGC 4 cut(s) 30, 138, 474, 1340
BspANI GGCC 4 cut(s) 59, 686, 1174, 1206
BspCNI CTCAG 4 cut(s) 509, 603, 1198, 1294
BspLI GGNNCC 2 cut(s) 605, 1252
BspPI GGATC 1 cut(s) 427
BspT104I TTCGAA 1 cut(s) 1069
BspT107I GGYRCC 1 cut(s) 1250
BsrI ACTGG 2 cut(s) 605, 1263
BssECI CCNNGG 2 cut(s) 278, 511
BssMI GATC 3 cut(s) 192, 419, 730
BssNI GRCGYC 2 cut(s) 126, 749
BssT1I CCWWGG 1 cut(s) 511
Bst4CI ACNGT 2 cut(s) 578, 1383
Bst6I CTCTTC 1 cut(s) 39
BstACI GRCGYC 2 cut(s) 126, 749
BstAPI GCANNNNNTGC 1 cut(s) 593
BstBI TTCGAA 1 cut(s) 1069
BstDEI CTNAG 4 cut(s) 496, 611, 1185, 1302
BstF5I GGATG 2 cut(s) 60, 955
BstHHI GCGC 1 cut(s) 1411
BstKTI GATC 3 cut(s) 195, 422, 733
BstMAI GTCTC 1 cut(s) 740
BstMBI GATC 3 cut(s) 192, 419, 730
BstMCI CGRYCG 1 cut(s) 109
BstMWI GCNNNNNNNGC 6 cut(s) 134, 593, 631, 722, 764, 794
BstNSI RCATGY 3 cut(s) 523, 634, 1244
BstSFI CTRYAG 1 cut(s) 1092
BstV1I GCAGC 3 cut(s) 388, 772, 1403
BstV2I GAAGAC 3 cut(s) 462, 884, 1340
BsuRI GGCC 4 cut(s) 59, 686, 1174, 1206
BtsCI GGATG 2 cut(s) 60, 955
BtsIMutI CAGTG 2 cut(s) 1270, 1379
CaiI CAGNNNCTG 1 cut(s) 593
CfoI GCGC 1 cut(s) 1411
Cfr13I GGNCC 2 cut(s) 604, 1088
CseI GACGC 1 cut(s) 134
Csp6I GTAC 2 cut(s) 149, 381
CviAII CATG 7 cut(s) 328, 520, 631, 832, 1202, 1230, 1241
CviQI GTAC 2 cut(s) 149, 381
DdeI CTNAG 4 cut(s) 496, 611, 1185, 1302
DpnI GATC 3 cut(s) 194, 421, 732
DpnII GATC 3 cut(s) 192, 419, 730
DraI TTTAAA 1 cut(s) 178
EaeI YGGCCR 2 cut(s) 57, 684
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Ecl136II GAGCTC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 511
Eco24I GRGCYC 1 cut(s) 40
Eco47I GGWCC 2 cut(s) 604, 1088
Eco53kI GAGCTC 1 cut(s) 38
Eco57I CTGAAG 3 cut(s) 974, 1193, 1352
Eco88I CYCGRG 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 38
EcoO109I RGGNCCY 1 cut(s) 604
EcoT14I CCWWGG 1 cut(s) 511
EcoT22I ATGCAT 1 cut(s) 1105
EcoT38I GRGCYC 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 511
Esp3I CGTCTC 1 cut(s) 740
FaeI CATG 7 cut(s) 331, 523, 634, 835, 1205, 1233, 1244
FalI AAGNNNNNCTT 2 cut(s) 665, 697
FaqI GGGAC 1 cut(s) 493
FatI CATG 7 cut(s) 327, 519, 630, 831, 1201, 1229, 1240
FblI GTMKAC 1 cut(s) 899
Fnu4HI GCNGC 4 cut(s) 138, 402, 786, 1392
FokI GGATG 2 cut(s) 47, 962
FriOI GRGCYC 1 cut(s) 40
Fsp4HI GCNGC 4 cut(s) 138, 402, 786, 1392
FspBI CTAG 5 cut(s) 12, 384, 512, 539, 1181
GlaI GCGC 1 cut(s) 1410
GluI GCNGC 4 cut(s) 138, 402, 786, 1392
GsuI CTGGAG 2 cut(s) 245, 956
HaeIII GGCC 4 cut(s) 59, 686, 1174, 1206
HapII CCGG 1 cut(s) 33
HgaI GACGC 1 cut(s) 134
HhaI GCGC 1 cut(s) 1411
Hin1I GRCGYC 2 cut(s) 126, 749
Hin1II CATG 7 cut(s) 331, 523, 634, 835, 1205, 1233, 1244
Hin6I GCGC 1 cut(s) 1409
HinP1I GCGC 1 cut(s) 1409
HincII GTYRAC 1 cut(s) 427
HindII GTYRAC 1 cut(s) 427
HindIII AAGCTT 2 cut(s) 248, 1016
HinfI GANTC 5 cut(s) 68, 188, 428, 617, 980
HpaII CCGG 1 cut(s) 33
HphI GGTGA 1 cut(s) 1132
Hpy166II GTNNAC 3 cut(s) 427, 900, 1235
Hpy188I TCNGA 8 cut(s) 376, 499, 612, 745, 846, 923, 1303, 1332
Hpy188III TCNNGA 7 cut(s) 41, 205, 224, 551, 645, 947, 977
Hpy8I GTNNAC 3 cut(s) 427, 900, 1235
Hpy99I CGWCG 3 cut(s) 86, 107, 128
HpyAV CCTTC 6 cut(s) 548, 617, 667, 1071, 1217, 1241
HpyCH4III ACNGT 2 cut(s) 578, 1383
HpyCH4IV ACGT 1 cut(s) 749
HpyCH4V TGCA 9 cut(s) 286, 470, 587, 596, 835, 892, 1033, 1103, 1319
HpyF10VI GCNNNNNNNGC 6 cut(s) 134, 593, 631, 722, 764, 794
HpyF3I CTNAG 4 cut(s) 496, 611, 1185, 1302
HpySE526I ACGT 1 cut(s) 749
Hsp92I GRCGYC 2 cut(s) 126, 749
Hsp92II CATG 7 cut(s) 331, 523, 634, 835, 1205, 1233, 1244
HspAI GCGC 1 cut(s) 1409
Kzo9I GATC 3 cut(s) 192, 419, 730
LmnI GCTCC 7 cut(s) 35, 226, 377, 398, 859, 1115, 1289
Lsp1109I GCAGC 3 cut(s) 388, 772, 1403
LweI GCATC 3 cut(s) 457, 1090, 1112
MaeI CTAG 5 cut(s) 12, 384, 512, 539, 1181
MaeII ACGT 1 cut(s) 749
MaeIII GTNAC 2 cut(s) 1138, 1277
MalI GATC 3 cut(s) 194, 421, 732
MboI GATC 3 cut(s) 192, 419, 730
MboII GAAGA 9 cut(s) 56, 187, 467, 886, 889, 980, 1280, 1345, 1360
MfeI CAATTG 1 cut(s) 792
MhlI GDGCHC 1 cut(s) 40
MlsI TGGCCA 2 cut(s) 59, 686
MluCI AATT 2 cut(s) 772, 792
MluNI TGGCCA 2 cut(s) 59, 686
MlyI GAGTC 5 cut(s) 62, 197, 422, 626, 974
MmeI TCCRAC 2 cut(s) 243, 466
Mox20I TGGCCA 2 cut(s) 59, 686
Mph1103I ATGCAT 1 cut(s) 1105
MscI TGGCCA 2 cut(s) 59, 686
MseI TTAA 3 cut(s) 177, 246, 332
MslI CAYNNNNRTG 1 cut(s) 1123
Msp20I TGGCCA 2 cut(s) 59, 686
MspA1I CMGCKG 2 cut(s) 476, 767
MspI CCGG 1 cut(s) 33
MunI CAATTG 1 cut(s) 792
MwoI GCNNNNNNNGC 6 cut(s) 134, 593, 631, 722, 764, 794
NdeII GATC 3 cut(s) 192, 419, 730
NlaIII CATG 7 cut(s) 331, 523, 634, 835, 1205, 1233, 1244
NlaIV GGNNCC 2 cut(s) 605, 1252
NmuCI GTSAC 1 cut(s) 1138
NsiI ATGCAT 1 cut(s) 1105
NspI RCATGY 3 cut(s) 523, 634, 1244
NspV TTCGAA 1 cut(s) 1069
PciI ACATGT 2 cut(s) 519, 1240
PcsI WCGNNNNNNNCGW 2 cut(s) 72, 102
PkrI GCNGC 4 cut(s) 139, 403, 787, 1393
PleI GAGTC 5 cut(s) 62, 196, 422, 625, 974
PpsI GAGTC 5 cut(s) 62, 196, 422, 625, 974
PpuMI RGGWCCY 1 cut(s) 604
PscI ACATGT 2 cut(s) 519, 1240
Psp124BI GAGCTC 1 cut(s) 40
Psp5II RGGWCCY 1 cut(s) 604
PspN4I GGNNCC 2 cut(s) 605, 1252
PspPI GGNCC 2 cut(s) 604, 1088
PspPPI RGGWCCY 1 cut(s) 604
PsrI GAACNNNNNNTAC 2 cut(s) 154, 186
PstNI CAGNNNCTG 1 cut(s) 593
PvuII CAGCTG 1 cut(s) 767
RsaI GTAC 2 cut(s) 150, 382
RsaNI GTAC 2 cut(s) 149, 381
RseI CAYNNNNRTG 1 cut(s) 1123
SacI GAGCTC 1 cut(s) 40
SaqAI TTAA 3 cut(s) 177, 246, 332
SatI GCNGC 4 cut(s) 138, 402, 786, 1392
Sau3AI GATC 3 cut(s) 192, 419, 730
Sau96I GGNCC 2 cut(s) 604, 1088
ScaI AGTACT 1 cut(s) 382
SchI GAGTC 5 cut(s) 62, 197, 422, 626, 974
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 3 cut(s) 457, 1090, 1112
SfcI CTRYAG 1 cut(s) 1092
SfuI TTCGAA 1 cut(s) 1069
SinI GGWCC 2 cut(s) 604, 1088
SmiMI CAYNNNNRTG 1 cut(s) 1123
SmlI CTYRAG 3 cut(s) 205, 803, 1019
SmoI CTYRAG 3 cut(s) 205, 803, 1019
SpeI ACTAGT 1 cut(s) 383
Sse9I AATT 2 cut(s) 772, 792
SsiI CCGC 4 cut(s) 30, 138, 474, 1340
SspMI CTAG 5 cut(s) 12, 384, 512, 539, 1181
SstI GAGCTC 1 cut(s) 40
StyI CCWWGG 1 cut(s) 511
TaaI ACNGT 2 cut(s) 578, 1383
TaiI ACGT 1 cut(s) 752
TaqI TCGA 8 cut(s) 42, 66, 123, 191, 706, 872, 1069, 1245
TaqII GACCGA 1 cut(s) 123
TasI AATT 2 cut(s) 772, 792
TatI WGTACW 1 cut(s) 380
TauI GCSGC 1 cut(s) 140
Tru1I TTAA 3 cut(s) 177, 246, 332
Tru9I TTAA 3 cut(s) 177, 246, 332
TscAI CASTG 2 cut(s) 1270, 1386
TseFI GTSAC 1 cut(s) 1138
TseI GCWGC 3 cut(s) 401, 785, 1391
Tsp45I GTSAC 1 cut(s) 1138
TspDTI ATGAA 4 cut(s) 318, 323, 686, 1017
TspRI CASTG 2 cut(s) 1270, 1386
VpaK11BI GGWCC 2 cut(s) 604, 1088
XapI RAATTY 1 cut(s) 772
XceI RCATGY 3 cut(s) 523, 634, 1244
XmaJI CCTAGG 1 cut(s) 511
XmiI GTMKAC 1 cut(s) 899
XspI CTAG 5 cut(s) 12, 384, 512, 539, 1181
ZraI GACGTC 1 cut(s) 750
ZrmI AGTACT 1 cut(s) 382
Zsp2I ATGCAT 1 cut(s) 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.