Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001798

Physical Location & Seq

Genomic Coordinates Reverse (-)

26932996 .. 26935568

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00404420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCTATCATAGCCTTGCAGAAGTTTCTGATACTGATTATGGAGCTTGACTTGTCGAAGAAGACAGCAGAAATGCAAGGGTCTACTACAACAGCAGATGGTGTCAGAACTCCTCTGCTGAAGATAGTTCTGGATGAGCTAACTTACGATAAGGATATTCTTGACTCATTTCTTCAGGTTCATATCTCTTTCCATTTTCCATTTATGGTTCGTTCTGTTTCTGTATTTGTATATGGTCTGAAGCATATGTTCCAGTCAGATGCACTGACTTATGTCATTATGGTTATTGAAATTGTTGAATTGCACTTTGTCCTGATTGATCATCATTTAACTAATCACACTCTGCATGTTGTAGCCTTCTGTTCGAACTCGTGGATCAAATGTCCTACAGATGATGCATCATTCAATGGAGCATTGAAGTGCTTTTCAAATGTCACCAGCACAAAAACCTCCATAAAAAAGATTAGGCCAGAACTAGCTCAGTTGCTTTTAGCACACGGCCTTCAGAATATCCAAACGGATTTTACAATGAGGCTTGCAATGTTAAGTCGTTCAGTAGCATGTGTTGTACTTCAACCCTCATCAGATATTGATCAAATCTTTTCTGTTTTTTATTTGGCTCATTTGTCCTTACCGTGTAAACAATATGTCGAAGGCACCTCTGCTTCCAGTGAAGAAACAAGTAACAGCTCCCTCATTGAAGTATCTGAGAATATAATATCTGCATTTAGAAATCTGAAGACTGCAGACAAGAAAATGGAGATTTTGCCACTTGGAAAAGCAGCATTGTTTATGGCAGCTACTATCATATCAGCACAGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0001067 GO:0002215 GO:0002376 GO:0002682 GO:0002683 GO:0002831 GO:0002832 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010112 GO:0010113 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010639 GO:0016043 GO:0016444 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0030915 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031348 GO:0031399 GO:0031400 GO:0032101 GO:0032102 GO:0032268 GO:0032269 GO:0032991 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043543 GO:0043900 GO:0043901 GO:0043966 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045087 GO:0045088 GO:0045824 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050776 GO:0050777 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051252 GO:0051253 GO:0051276 GO:0051569 GO:0051572 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090304 GO:0097159 GO:0098542 GO:0106068 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1905268 GO:1990234 GO:2000112 GO:2000113 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

274

Amino Acids

30.5

Weight (kDa)

6.19

Isoelectric Point (pI)

40.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001798)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18470
fragaria_vesca	FvH4_3g08270 FvH4_3g08270 FvH4_3g08270 FvH4_3g08270 FvH4_3g08270 FvH4_3g08270 FvH4_7g02070 FvH4_7g02070
malus_domestica	MD05G1306600.v1.1 MD10G1285700.v1.1 MD10G1285800.v1.1 MD10G1285900.v1.1
prunus_persica	Prupe.4G055900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0115591 RchiOBHm_Chr3g0476981 RchiOBHm_Chr3g0477111 RchiOBHm_Chr4g0432891 RchiOBHm_Chr5g0009801
rosa_laevigata	RLG00000031701
rosa_multiflora	Rmu_sc0000288.1_g000020 Rmu_sc0008691.1_g000001 Rmu_sc0014848.1_g000001 Rmu_sc0023367.1_g000006 Rmu_ssc0000274.1_g000004
rosa_roxburghii	Rroxscaffold_1G00066390 Rroxscaffold_6G00404420 Rroxscaffold_6G00404900
rosa_rugosa	Rorug03G0158000 Rorug04G0445900 Rorug05G0241800
rosa_samantha	Rh2BG457800 Rh2DG467500 Rh3AG208000 Rh3AG208100 Rh3BG241000 Rh3BG242100 Rh3CG235600 Rh3DG234300 Rh5AG077400 Rh5AG529000 Rh5BG072500 Rh5CG084900 Rh5DG073000
rosa_wichuraiana	Rw3G018980 Rw3G018990 Rw5G007130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	656
AccI	GTMKAC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	383
AcuI	CTGAAG	5 cut(s)	140, 158, 260, 488, 758
AfaI	GTAC	1 cut(s)	570
AgsI	TTSAA	7 cut(s)	290, 299, 406, 418, 429, 575, 701
AluBI	AGCT	5 cut(s)	46, 139, 479, 690, 800
AluI	AGCT	5 cut(s)	46, 139, 479, 690, 800
AlwI	GGATC	1 cut(s)	383
AoxI	GGCC	2 cut(s)	467, 499
ApeKI	GCWGC	2 cut(s)	782, 797
AsuHPI	GGTGA	1 cut(s)	427
AsuII	TTCGAA	1 cut(s)	365
BanI	GGYRCC	1 cut(s)	656
BauI	CACGAG	1 cut(s)	370
BbsI	GAAGAC	2 cut(s)	68, 746
BbvI	GCAGC	2 cut(s)	794, 809
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	1 cut(s)	514
BclI	TGATCA	2 cut(s)	319, 592
BfaI	CTAG	1 cut(s)	476
BfmI	CTRYAG	2 cut(s)	387, 744
BisI	GCNGC	2 cut(s)	783, 798
BlsI	GCNGC	2 cut(s)	784, 799
BmiI	GGNNCC	1 cut(s)	658
BmsI	GCATC	3 cut(s)	250, 385, 407
BoxI	GACNNNNGTC	1 cut(s)	272
BpiI	GAAGAC	2 cut(s)	68, 746
Bpu14I	TTCGAA	1 cut(s)	365
BsaBI	GATNNNNATC	1 cut(s)	591
Bse1I	ACTGG	2 cut(s)	253, 669
Bse3DI	GCAATG	1 cut(s)	546
Bse8I	GATNNNNATC	1 cut(s)	591
BseGI	GGATG	1 cut(s)	139
BseJI	GATNNNNATC	1 cut(s)	591
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	2 cut(s)	494, 699
BseNI	ACTGG	2 cut(s)	253, 669
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	794, 809
BshFI	GGCC	2 cut(s)	469, 501
BshNI	GGYRCC	1 cut(s)	656
BsnI	GGCC	2 cut(s)	469, 501
Bsp119I	TTCGAA	1 cut(s)	365
Bsp143I	GATC	3 cut(s)	319, 375, 592
BspANI	GGCC	2 cut(s)	469, 501
BspCNI	CTCAG	2 cut(s)	493, 700
BspLI	GGNNCC	1 cut(s)	658
BspMAI	CTGCAG	1 cut(s)	748
BspPI	GGATC	1 cut(s)	383
BspT104I	TTCGAA	1 cut(s)	365
BspT107I	GGYRCC	1 cut(s)	656
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	2 cut(s)	253, 669
BssMI	GATC	3 cut(s)	319, 375, 592
BssSI	CACGAG	1 cut(s)	370
Bst2BI	CACGAG	1 cut(s)	370
Bst4CI	ACNGT	2 cut(s)	636, 819
BstBI	TTCGAA	1 cut(s)	365
BstC8I	GCNNGC	1 cut(s)	537
BstDEI	CTNAG	2 cut(s)	480, 708
BstF5I	GGATG	1 cut(s)	139
BstKTI	GATC	3 cut(s)	322, 378, 595
BstMBI	GATC	3 cut(s)	319, 375, 592
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	2 cut(s)	350, 564
BstPAI	GACNNNNGTC	1 cut(s)	272
BstSFI	CTRYAG	2 cut(s)	387, 744
BstV1I	GCAGC	2 cut(s)	794, 809
BstV2I	GAAGAC	2 cut(s)	68, 746
BsuRI	GGCC	2 cut(s)	469, 501
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	2 cut(s)	263, 676
Cac8I	GCNNGC	1 cut(s)	537
Csp6I	GTAC	1 cut(s)	569
CviAII	CATG	2 cut(s)	347, 561
CviQI	GTAC	1 cut(s)	569
DdeI	CTNAG	2 cut(s)	480, 708
DpnI	GATC	3 cut(s)	321, 377, 594
DpnII	GATC	3 cut(s)	319, 375, 592
Eco57I	CTGAAG	5 cut(s)	140, 158, 260, 488, 758
EcoT22I	ATGCAT	1 cut(s)	400
FaeI	CATG	2 cut(s)	350, 564
FatI	CATG	2 cut(s)	346, 560
FauNDI	CATATG	1 cut(s)	246
FbaI	TGATCA	2 cut(s)	319, 592
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	2 cut(s)	783, 798
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	2 cut(s)	783, 798
FspBI	CTAG	1 cut(s)	476
GluI	GCNGC	2 cut(s)	783, 798
HaeIII	GGCC	2 cut(s)	469, 501
Hin1II	CATG	2 cut(s)	350, 564
HinfI	GANTC	1 cut(s)	164
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	84, 641
Hpy188I	TCNGA	8 cut(s)	30, 107, 240, 259, 507, 586, 709, 738
Hpy188III	TCNNGA	3 cut(s)	131, 161, 313
Hpy8I	GTNNAC	2 cut(s)	84, 641
HpyAV	CCTTC	3 cut(s)	367, 512, 647
HpyCH4III	ACNGT	2 cut(s)	636, 819
HpyCH4V	TGCA	9 cut(s)	19, 76, 263, 304, 346, 398, 539, 725, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	2 cut(s)	480, 708
Hsp92II	CATG	2 cut(s)	350, 564
Ksp22I	TGATCA	2 cut(s)	319, 592
Kzo9I	GATC	3 cut(s)	319, 375, 592
LmnI	GCTCC	3 cut(s)	43, 410, 695
LpnPI	CCDG	7 cut(s)	116, 161, 266, 326, 451, 483, 682
Lsp1109I	GCAGC	2 cut(s)	794, 809
LweI	GCATC	3 cut(s)	250, 385, 407
MaeI	CTAG	1 cut(s)	476
MaeIII	GTNAC	2 cut(s)	433, 683
MalI	GATC	3 cut(s)	321, 377, 594
MboI	GATC	3 cut(s)	319, 375, 592
MboII	GAAGA	6 cut(s)	70, 73, 133, 164, 686, 751
MluCI	AATT	2 cut(s)	291, 299
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	6 cut(s)	123, 460, 525, 589, 670, 704
Mph1103I	ATGCAT	1 cut(s)	400
MseI	TTAA	2 cut(s)	329, 545
MslI	CAYNNNNRTG	1 cut(s)	418
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeI	CATATG	1 cut(s)	246
NdeII	GATC	3 cut(s)	319, 375, 592
NlaIII	CATG	2 cut(s)	350, 564
NlaIV	GGNNCC	1 cut(s)	658
NmuCI	GTSAC	1 cut(s)	433
NsiI	ATGCAT	1 cut(s)	400
NspI	RCATGY	2 cut(s)	350, 564
NspV	TTCGAA	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	784, 799
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PshAI	GACNNNNGTC	1 cut(s)	272
PspN4I	GGNNCC	1 cut(s)	658
PstI	CTGCAG	1 cut(s)	748
RsaI	GTAC	1 cut(s)	570
RsaNI	GTAC	1 cut(s)	569
RseI	CAYNNNNRTG	1 cut(s)	418
SaqAI	TTAA	2 cut(s)	329, 545
SatI	GCNGC	2 cut(s)	783, 798
Sau3AI	GATC	3 cut(s)	319, 375, 592
SchI	GAGTC	1 cut(s)	158
SetI	ASST	8 cut(s)	48, 141, 180, 452, 481, 662, 692, 802
SfaNI	GCATC	3 cut(s)	250, 385, 407
SfcI	CTRYAG	2 cut(s)	387, 744
SfuI	TTCGAA	1 cut(s)	365
SmiMI	CAYNNNNRTG	1 cut(s)	418
Sse9I	AATT	2 cut(s)	291, 299
SspMI	CTAG	1 cut(s)	476
TaaI	ACNGT	2 cut(s)	636, 819
TaqI	TCGA	3 cut(s)	56, 365, 651
TasI	AATT	2 cut(s)	291, 299
TatI	WGTACW	1 cut(s)	568
Tru1I	TTAA	2 cut(s)	329, 545
Tru9I	TTAA	2 cut(s)	329, 545
TscAI	CASTG	2 cut(s)	270, 676
TseFI	GTSAC	1 cut(s)	433
TseI	GCWGC	2 cut(s)	782, 797
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	533
TspRI	CASTG	2 cut(s)	270, 676
XceI	RCATGY	2 cut(s)	350, 564
XmiI	GTMKAC	1 cut(s)	83
XspI	CTAG	1 cut(s)	476
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.