Rorug05G0241800

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000572
Physical Location & Seq
Reverse (-)
25802669 .. 25804562
1894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0241800.1

Sequence Viewer

Length: 558 bp
ATGGCCTCAAAGCTGTTGTTGATCGCAATCGTCATCGTTAACATCATCGCTTTTGGGCTCGCTGTTGCAGCTGAGCAGAGGAGAAGCCATGCAAATATCGTGCAAGATAATGAAAAGAACTACAACTATTGTGTCTATGACTCAGACATTGCAACAGGCTACGGTGTTGGAGCATTTTTGTTCCTCTTGGTATCTCAGGTCATCGTAATGTTGGTAAGCCGATGCTTTTGTTGCGGAAAGCCATTGAGCCCTGGAGGAGCAAGAGCCTGGGCAGTCGTCCTTTTCATAACCTGCTGGTTCTTTTTCTTCATTGCTGAGGCGTGCTTGCTGGCGGGTTCCGTGAGTAACGCCTACCACACCAAGTACAGGACCATTTTCGGCGAAGACCCTCCAGATTGCCAGACATTGAGAAAGGGAGTTTTTGGGGCAGGGGCAGCTTTCATTTTCCTGAACACAATTGTGTCGTCGTTCTACTACACTAACTATTCCAGAGCCAGGGCAAGCTTTCAGTCATATGGAACTGGAGAGGCCGCTGTTGGTCTCGGCACCTTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

185

Amino Acids

20.16

Weight (kDa)

8.68

Isoelectric Point (pI)

28.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1218 PF06749 58 - 152 7.8e-32 Protein of unknown function (DUF1218)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 299
AccB1I GGYRCC 1 cut(s) 545
AciI CCGC 3 cut(s) 234, 332, 531
AfaI GTAC 1 cut(s) 365
AfiI CCNNNNNNNGG 2 cut(s) 366, 495
AjnI CCWGG 3 cut(s) 250, 266, 494
AleI CACNNNNGTG 1 cut(s) 458
AluBI AGCT 4 cut(s) 13, 71, 437, 504
AluI AGCT 4 cut(s) 13, 71, 437, 504
Alw26I GTCTC 1 cut(s) 545
AoxI GGCC 2 cut(s) 3, 528
ApeKI GCWGC 2 cut(s) 68, 434
AspS9I GGNCC 1 cut(s) 369
AvaII GGWCC 1 cut(s) 369
BanI GGYRCC 1 cut(s) 545
BanII GRGCYC 2 cut(s) 60, 251
BbsI GAAGAC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 315
BbvI GCAGC 2 cut(s) 80, 446
BciT130I CCWGG 3 cut(s) 252, 268, 496
BcoDI GTCTC 1 cut(s) 545
BfuAI ACCTGC 1 cut(s) 299
BisI GCNGC 3 cut(s) 69, 435, 531
BlpI GCTNAGC 1 cut(s) 72
BlsI GCNGC 3 cut(s) 70, 436, 532
Bme1390I CCNGG 3 cut(s) 252, 268, 496
Bme18I GGWCC 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 369
BmiI GGNNCC 2 cut(s) 337, 547
BmrFI CCNGG 3 cut(s) 252, 268, 496
BmsI GCATC 1 cut(s) 212
BpiI GAAGAC 1 cut(s) 390
BpmI CTGGAG 3 cut(s) 273, 375, 543
Bpu10I CCTNAGC 1 cut(s) 315
Bpu1102I GCTNAGC 1 cut(s) 72
BsaBI GATNNNNATC 1 cut(s) 26
BsaI GGTCTC 1 cut(s) 545
BsaJI CCNNGG 3 cut(s) 250, 267, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 366, 495
Bse1I ACTGG 1 cut(s) 526
Bse3DI GCAATG 2 cut(s) 147, 309
Bse8I GATNNNNATC 1 cut(s) 26
BseBI CCWGG 3 cut(s) 252, 268, 496
BseDI CCNNGG 3 cut(s) 250, 267, 495
BseJI GATNNNNATC 1 cut(s) 26
BseLI CCNNNNNNNGG 2 cut(s) 366, 495
BseMI GCAATG 2 cut(s) 147, 309
BseMII CTCAG 4 cut(s) 63, 156, 209, 306
BseNI ACTGG 1 cut(s) 526
BseRI GAGGAG 2 cut(s) 94, 270
BseXI GCAGC 2 cut(s) 80, 446
BshFI GGCC 2 cut(s) 5, 530
BshNI GGYRCC 1 cut(s) 545
BslI CCNNNNNNNGG 2 cut(s) 366, 495
BsmAI GTCTC 1 cut(s) 545
BsnI GGCC 2 cut(s) 5, 530
Bso31I GGTCTC 1 cut(s) 545
Bsp1286I GDGCHC 2 cut(s) 60, 251
Bsp143I GATC 1 cut(s) 21
Bsp1720I GCTNAGC 1 cut(s) 72
BspACI CCGC 3 cut(s) 234, 332, 531
BspANI GGCC 2 cut(s) 5, 530
BspCNI CTCAG 4 cut(s) 64, 155, 208, 307
BspLI GGNNCC 2 cut(s) 337, 547
BspMI ACCTGC 1 cut(s) 299
BspT107I GGYRCC 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 545
BsrDI GCAATG 2 cut(s) 147, 309
BsrI ACTGG 1 cut(s) 526
BssECI CCNNGG 3 cut(s) 250, 267, 495
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 3 cut(s) 252, 268, 496
Bst4CI ACNGT 1 cut(s) 164
BstC8I GCNNGC 5 cut(s) 60, 322, 326, 330, 502
BstDEI CTNAG 4 cut(s) 72, 142, 195, 315
BstKTI GATC 1 cut(s) 24
BstMAI GTCTC 1 cut(s) 545
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 3 cut(s) 68, 231, 434
BstNI CCWGG 3 cut(s) 252, 268, 496
BstSCI CCNGG 3 cut(s) 250, 266, 494
BstV1I GCAGC 2 cut(s) 80, 446
BstV2I GAAGAC 1 cut(s) 390
BsuRI GGCC 2 cut(s) 5, 530
BtgZI GCGATG 1 cut(s) 31
BveI ACCTGC 1 cut(s) 299
Cac8I GCNNGC 5 cut(s) 60, 322, 326, 330, 502
Cfr13I GGNCC 1 cut(s) 369
Csp6I GTAC 1 cut(s) 364
CviAII CATG 1 cut(s) 89
CviQI GTAC 1 cut(s) 364
DdeI CTNAG 4 cut(s) 72, 142, 195, 315
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
DraI TTTAAA 1 cut(s) 553
Eco24I GRGCYC 2 cut(s) 60, 251
Eco31I GGTCTC 1 cut(s) 545
Eco47I GGWCC 1 cut(s) 369
EcoRII CCWGG 3 cut(s) 250, 266, 494
EcoT38I GRGCYC 2 cut(s) 60, 251
FaeI CATG 1 cut(s) 92
FaiI YATR 5 cut(s) 90, 138, 287, 514, 516
FatI CATG 1 cut(s) 88
FauI CCCGC 1 cut(s) 325
FauNDI CATATG 1 cut(s) 514
Fnu4HI GCNGC 3 cut(s) 69, 435, 531
FriOI GRGCYC 2 cut(s) 60, 251
Fsp4HI GCNGC 3 cut(s) 69, 435, 531
GluI GCNGC 3 cut(s) 69, 435, 531
GsuI CTGGAG 3 cut(s) 273, 375, 543
HaeIII GGCC 2 cut(s) 5, 530
Hin1II CATG 1 cut(s) 92
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HindIII AAGCTT 1 cut(s) 502
HinfI GANTC 1 cut(s) 140
HpaI GTTAAC 1 cut(s) 40
Hpy166II GTNNAC 1 cut(s) 40
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 392, 448, 489
Hpy8I GTNNAC 1 cut(s) 40
Hpy99I CGWCG 1 cut(s) 469
HpyCH4III ACNGT 1 cut(s) 164
HpyCH4V TGCA 4 cut(s) 68, 92, 103, 152
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 231, 434
HpyF3I CTNAG 4 cut(s) 72, 142, 195, 315
Hsp92II CATG 1 cut(s) 92
KspAI GTTAAC 1 cut(s) 40
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 2 cut(s) 170, 257
Lsp1109I GCAGC 2 cut(s) 80, 446
LweI GCATC 1 cut(s) 212
MaeIII GTNAC 1 cut(s) 344
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 2 cut(s) 298, 395
MfeI CAATTG 1 cut(s) 456
MhlI GDGCHC 2 cut(s) 60, 251
MluCI AATT 1 cut(s) 456
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 7 cut(s) 16, 72, 194, 248, 310, 399, 520
MseI TTAA 2 cut(s) 39, 552
MslI CAYNNNNRTG 2 cut(s) 206, 458
MspA1I CMGCKG 2 cut(s) 71, 533
MspR9I CCNGG 3 cut(s) 252, 268, 496
MunI CAATTG 1 cut(s) 456
MvaI CCWGG 3 cut(s) 252, 268, 496
MwoI GCNNNNNNNGC 3 cut(s) 68, 231, 434
NdeI CATATG 1 cut(s) 514
NdeII GATC 1 cut(s) 21
NlaIII CATG 1 cut(s) 92
NlaIV GGNNCC 2 cut(s) 337, 547
NmeAIII GCCGAG 1 cut(s) 522
OliI CACNNNNGTG 1 cut(s) 458
PkrI GCNGC 3 cut(s) 70, 436, 532
PleI GAGTC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 134
Psp6I CCWGG 3 cut(s) 250, 266, 494
PspGI CCWGG 3 cut(s) 250, 266, 494
PspN4I GGNNCC 2 cut(s) 337, 547
PspPI GGNCC 1 cut(s) 369
PvuII CAGCTG 1 cut(s) 71
RsaI GTAC 1 cut(s) 365
RsaNI GTAC 1 cut(s) 364
RseI CAYNNNNRTG 2 cut(s) 206, 458
SaqAI TTAA 2 cut(s) 39, 552
SatI GCNGC 3 cut(s) 69, 435, 531
Sau3AI GATC 1 cut(s) 21
Sau96I GGNCC 1 cut(s) 369
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 252, 268, 496
SduI GDGCHC 2 cut(s) 60, 251
SetI ASST 7 cut(s) 15, 73, 201, 293, 439, 506, 551
SfaNI GCATC 1 cut(s) 212
SinI GGWCC 1 cut(s) 369
SmiMI CAYNNNNRTG 2 cut(s) 206, 458
Sse9I AATT 1 cut(s) 456
SsiI CCGC 3 cut(s) 234, 332, 531
StyD4I CCNGG 3 cut(s) 250, 266, 494
TaaI ACNGT 1 cut(s) 164
TasI AATT 1 cut(s) 456
TatI WGTACW 1 cut(s) 363
TauI GCSGC 1 cut(s) 533
Tru1I TTAA 2 cut(s) 39, 552
Tru9I TTAA 2 cut(s) 39, 552
TseI GCWGC 2 cut(s) 68, 434
TspDTI ATGAA 4 cut(s) 126, 274, 298, 430
TspGWI ACGGA 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.