Rw0G008830

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00342
OG0000572
Physical Location & Seq
Reverse (-)
15869 .. 16832
964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G008830.1

Sequence Viewer

Length: 816 bp
ATGTTTGGGGGATATCAAAATGAGAAGAGCGATTACACCACCAAGTCGGAAGGCCGGAGGCAGAGAAGGGGAGAGGATGGGATCTATCACCTCAAGGTTTCTCTTGAAGATCTCTACACCGGCACAACCAGAAAGCTTGCTGTCACTCGCAACAAGATCTGCACCAAGTGCAAGGGCAAAGGGTCAAAGTCAGGTGCTTCAAGGACGTGCCGTGGTTGCCAAGGGCATGGTTATAAAGTCACTGTACGCCATTTAAGCCAAAATTTGAGGCAGCAAACGCAGTACTACTGCTATGAGTGCAAGGGCACTGGCCAGACCATTCGTGCCAAGGACCGCTGCCAGCAGTGCAAGGGTGACAAGGTTGTGCAGGAGAAGAAAATATTGGAAGTCCACGTGGAGATAGGAATGAAAAACGGGCAGAAGATCATATTCCCTGGCGAAGCTCACGAAGGGCCTAATACCATCACATGTAATATTTTTAAGCGAGAGGGGGATGACCTAATATTTAAGTATAAATTGTCCCTAAAGGAGGCACTCTGTGGGTTCCAATTTAGGTTGACACATTTGGACGTTGTCAACCCTAATCAGTGCAAAGCTATACATGATGAAGGCATGCCAATATACTCGAATCCATTTATTAAGGGCAAGTTGTATGTTCAGTTCACTTCACCGCTTACTGATAAGGAGCTAGACGAATGCGATGAGACTACGCTGTATGATGTGAACATGGAGGACGAAATGCGAAAAAAGAAAGCAAATCAGTCTCAAGAGGCATATGAGGAAGATGAGGACATCCATGGTGATGCCGGTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

271

Amino Acids

30.92

Weight (kDa)

8.49

Isoelectric Point (pI)

28.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ_C PF01556 29 - 221 4.1e-24 DnaJ C terminal domain
DnaJ_CXXCXGXG PF00684 54 - 120 1.1e-12 DnaJ central domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 234
AciI CCGC 2 cut(s) 334, 671
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 310
AcsI RAATTY 1 cut(s) 262
AcvI CACGTG 1 cut(s) 394
AdeI CACNNNGTG 2 cut(s) 168, 539
AfaI GTAC 2 cut(s) 246, 284
AfiI CCNNNNNNNGG 1 cut(s) 529
AflIII ACRYGT 1 cut(s) 467
AgsI TTSAA 2 cut(s) 107, 201
AjiI CACGTC 1 cut(s) 207
AjnI CCWGG 1 cut(s) 433
AjuI GAANNNNNNNTTGG 2 cut(s) 365, 397
AluBI AGCT 4 cut(s) 136, 443, 596, 688
AluI AGCT 4 cut(s) 136, 443, 596, 688
Alw26I GTCTC 2 cut(s) 698, 768
AlwI GGATC 1 cut(s) 89
AoxI GGCC 3 cut(s) 52, 310, 452
ApeKI GCWGC 2 cut(s) 271, 336
ApoI RAATTY 1 cut(s) 262
AspS9I GGNCC 2 cut(s) 331, 452
AsuHPI GGTGA 4 cut(s) 80, 365, 660, 812
AvaII GGWCC 1 cut(s) 331
BaeGI GKGCMC 1 cut(s) 308
BalI TGGCCA 1 cut(s) 312
BarI GAAGNNNNNNTAC 2 cut(s) 17, 49
BbrPI CACGTG 1 cut(s) 394
BbvI GCAGC 2 cut(s) 283, 323
BccI CCATC 2 cut(s) 71, 470
BceAI ACGGC 1 cut(s) 195
BciT130I CCWGG 1 cut(s) 435
BcoDI GTCTC 2 cut(s) 698, 768
BfaI CTAG 1 cut(s) 689
BglII AGATCT 2 cut(s) 109, 156
BisI GCNGC 2 cut(s) 272, 337
BlsI GCNGC 2 cut(s) 273, 338
BmcAI AGTACT 1 cut(s) 284
Bme1390I CCNGG 1 cut(s) 435
Bme18I GGWCC 1 cut(s) 331
BmgBI CACGTC 1 cut(s) 207
BmgT120I GGNCC 2 cut(s) 331, 452
BmiI GGNNCC 1 cut(s) 545
BmrFI CCNGG 1 cut(s) 435
BmsI GCATC 1 cut(s) 793
BpuEI CTTGAG 2 cut(s) 77, 750
BsaAI YACGTR 1 cut(s) 394
BsaJI CCNNGG 5 cut(s) 211, 220, 327, 433, 796
Bsc4I CCNNNNNNNGG 1 cut(s) 529
Bse118I RCCGGY 2 cut(s) 119, 806
Bse1I ACTGG 1 cut(s) 313
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 5 cut(s) 211, 220, 327, 433, 796
BseGI GGATG 3 cut(s) 82, 499, 792
BseLI CCNNNNNNNGG 1 cut(s) 529
BseNI ACTGG 1 cut(s) 313
BseSI GKGCMC 1 cut(s) 308
BseXI GCAGC 2 cut(s) 283, 323
BsgI GTGCAG 2 cut(s) 145, 386
BshFI GGCC 3 cut(s) 54, 312, 454
BsiSI CCGG 3 cut(s) 55, 120, 807
BslFI GGGAC 1 cut(s) 505
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 2 cut(s) 698, 768
BsmFI GGGAC 1 cut(s) 505
BsmI GAATGC 1 cut(s) 701
BsnI GGCC 3 cut(s) 54, 312, 454
Bsp1286I GDGCHC 1 cut(s) 308
Bsp143I GATC 4 cut(s) 81, 109, 156, 423
Bsp19I CCATGG 1 cut(s) 796
BspACI CCGC 2 cut(s) 334, 671
BspANI GGCC 3 cut(s) 54, 312, 454
BspLI GGNNCC 1 cut(s) 545
BspPI GGATC 1 cut(s) 89
BspQI GCTCTTC 1 cut(s) 20
BsrFI RCCGGY 2 cut(s) 119, 806
BsrI ACTGG 1 cut(s) 313
BssAI RCCGGY 2 cut(s) 119, 806
BssECI CCNNGG 5 cut(s) 211, 220, 327, 433, 796
BssMI GATC 4 cut(s) 81, 109, 156, 423
BssT1I CCWWGG 3 cut(s) 220, 327, 796
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 1 cut(s) 244
Bst6I CTCTTC 1 cut(s) 20
BstAPI GCANNNNNTGC 1 cut(s) 168
BstBAI YACGTR 1 cut(s) 394
BstC8I GCNNGC 3 cut(s) 138, 341, 614
BstDSI CCRYGG 2 cut(s) 211, 796
BstENI CCTNNNNNAGG 1 cut(s) 527
BstF5I GGATG 3 cut(s) 82, 499, 792
BstKTI GATC 4 cut(s) 84, 112, 159, 426
BstMAI GTCTC 2 cut(s) 698, 768
BstMBI GATC 4 cut(s) 81, 109, 156, 423
BstMWI GCNNNNNNNGC 6 cut(s) 168, 216, 255, 277, 297, 345
BstNI CCWGG 1 cut(s) 435
BstNSI RCATGY 2 cut(s) 471, 616
BstSCI CCNGG 1 cut(s) 433
BstSLI GKGCMC 1 cut(s) 308
BstV1I GCAGC 2 cut(s) 283, 323
BstX2I RGATCY 3 cut(s) 81, 109, 156
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 3 cut(s) 81, 109, 156
BsuRI GGCC 3 cut(s) 54, 312, 454
BtgI CCRYGG 2 cut(s) 211, 796
BtgZI GCGATG 1 cut(s) 714
BtrI CACGTC 1 cut(s) 207
BtsCI GGATG 3 cut(s) 82, 499, 792
BtsI GCAGTG 1 cut(s) 350
BtsIMutI CAGTG 4 cut(s) 240, 306, 350, 593
Cac8I GCNNGC 3 cut(s) 138, 341, 614
Cfr10I RCCGGY 2 cut(s) 119, 806
Cfr13I GGNCC 2 cut(s) 331, 452
Csp6I GTAC 2 cut(s) 245, 283
CviAII CATG 6 cut(s) 227, 468, 602, 613, 727, 797
CviJI RGCY 8 cut(s) 54, 136, 258, 312, 443, 454, 596, 688
CviKI_1 RGCY 8 cut(s) 54, 136, 258, 312, 443, 454, 596, 688
CviQI GTAC 2 cut(s) 245, 283
DpnI GATC 4 cut(s) 83, 111, 158, 425
DpnII GATC 4 cut(s) 81, 109, 156, 423
DraIII CACNNNGTG 2 cut(s) 168, 539
EaeI YGGCCR 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 20
EarI CTCTTC 1 cut(s) 20
Eco130I CCWWGG 3 cut(s) 220, 327, 796
Eco32I GATATC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 331
Eco72I CACGTG 1 cut(s) 394
EcoNI CCTNNNNNAGG 1 cut(s) 527
EcoO109I RGGNCCY 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 433
EcoRV GATATC 1 cut(s) 14
EcoT14I CCWWGG 3 cut(s) 220, 327, 796
ErhI CCWWGG 3 cut(s) 220, 327, 796
FaeI CATG 6 cut(s) 230, 471, 605, 616, 730, 800
FaqI GGGAC 1 cut(s) 505
FatI CATG 6 cut(s) 226, 467, 601, 612, 726, 796
FauNDI CATATG 1 cut(s) 775
Fnu4HI GCNGC 2 cut(s) 272, 337
FokI GGATG 3 cut(s) 89, 506, 779
Fsp4HI GCNGC 2 cut(s) 272, 337
FspBI CTAG 1 cut(s) 689
GluI GCNGC 2 cut(s) 272, 337
HaeIII GGCC 3 cut(s) 54, 312, 454
HapII CCGG 3 cut(s) 55, 120, 807
Hin1II CATG 6 cut(s) 230, 471, 605, 616, 730, 800
HincII GTYRAC 2 cut(s) 558, 577
HindII GTYRAC 2 cut(s) 558, 577
HindIII AAGCTT 1 cut(s) 134
HinfI GANTC 1 cut(s) 628
HpaII CCGG 3 cut(s) 55, 120, 807
HphI GGTGA 4 cut(s) 80, 365, 660, 812
Hpy166II GTNNAC 5 cut(s) 391, 558, 577, 663, 724
Hpy188I TCNGA 1 cut(s) 49
Hpy188III TCNNGA 3 cut(s) 104, 446, 767
Hpy8I GTNNAC 5 cut(s) 391, 558, 577, 663, 724
HpyAV CCTTC 4 cut(s) 44, 60, 443, 602
HpyCH4III ACNGT 1 cut(s) 244
HpyCH4IV ACGT 3 cut(s) 206, 393, 570
HpyCH4V TGCA 6 cut(s) 162, 171, 300, 348, 367, 591
HpyF10VI GCNNNNNNNGC 6 cut(s) 168, 216, 255, 277, 297, 345
HpySE526I ACGT 3 cut(s) 206, 393, 570
Hsp92II CATG 6 cut(s) 230, 471, 605, 616, 730, 800
Kzo9I GATC 4 cut(s) 81, 109, 156, 423
LguI GCTCTTC 1 cut(s) 20
LmnI GCTCC 1 cut(s) 685
Lsp1109I GCAGC 2 cut(s) 283, 323
LweI GCATC 1 cut(s) 793
MaeI CTAG 1 cut(s) 689
MaeII ACGT 3 cut(s) 206, 393, 570
MaeIII GTNAC 3 cut(s) 142, 238, 353
MalI GATC 4 cut(s) 83, 111, 158, 425
MboI GATC 4 cut(s) 81, 109, 156, 423
MboII GAAGA 5 cut(s) 37, 119, 385, 433, 794
MflI RGATCY 3 cut(s) 81, 109, 156
MhlI GDGCHC 1 cut(s) 308
MlsI TGGCCA 1 cut(s) 312
MluCI AATT 3 cut(s) 262, 515, 548
MluNI TGGCCA 1 cut(s) 312
MmeI TCCRAC 1 cut(s) 27
Mox20I TGGCCA 1 cut(s) 312
MscI TGGCCA 1 cut(s) 312
MseI TTAA 4 cut(s) 254, 480, 507, 639
MslI CAYNNNNRTG 1 cut(s) 801
Msp20I TGGCCA 1 cut(s) 312
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 3 cut(s) 55, 120, 807
MspR9I CCNGG 1 cut(s) 435
Mva1269I GAATGC 1 cut(s) 701
MvaI CCWGG 1 cut(s) 435
MwoI GCNNNNNNNGC 6 cut(s) 168, 216, 255, 277, 297, 345
NcoI CCATGG 1 cut(s) 796
NdeI CATATG 1 cut(s) 775
NdeII GATC 4 cut(s) 81, 109, 156, 423
NlaIII CATG 6 cut(s) 230, 471, 605, 616, 730, 800
NlaIV GGNNCC 1 cut(s) 545
NmuCI GTSAC 3 cut(s) 142, 238, 353
NspI RCATGY 2 cut(s) 471, 616
PaeI GCATGC 1 cut(s) 616
PciI ACATGT 1 cut(s) 467
PciSI GCTCTTC 1 cut(s) 20
PctI GAATGC 1 cut(s) 701
PfeI GAWTC 1 cut(s) 628
PflFI GACNNNGTC 1 cut(s) 572
PkrI GCNGC 2 cut(s) 273, 338
PmaCI CACGTG 1 cut(s) 394
PmlI CACGTG 1 cut(s) 394
Ppu21I YACGTR 1 cut(s) 394
PscI ACATGT 1 cut(s) 467
PsiI TTATAA 1 cut(s) 234
Psp6I CCWGG 1 cut(s) 433
PspCI CACGTG 1 cut(s) 394
PspGI CCWGG 1 cut(s) 433
PspN4I GGNNCC 1 cut(s) 545
PspPI GGNCC 2 cut(s) 331, 452
PsrI GAACNNNNNNTAC 2 cut(s) 644, 676
PsuI RGATCY 3 cut(s) 81, 109, 156
PsyI GACNNNGTC 1 cut(s) 572
RsaI GTAC 2 cut(s) 246, 284
RsaNI GTAC 2 cut(s) 245, 283
RseI CAYNNNNRTG 1 cut(s) 801
SapI GCTCTTC 1 cut(s) 20
SaqAI TTAA 4 cut(s) 254, 480, 507, 639
SatI GCNGC 2 cut(s) 272, 337
Sau3AI GATC 4 cut(s) 81, 109, 156, 423
Sau96I GGNCC 2 cut(s) 331, 452
ScaI AGTACT 1 cut(s) 284
ScrFI CCNGG 1 cut(s) 435
SduI GDGCHC 1 cut(s) 308
SfaNI GCATC 1 cut(s) 793
SinI GGWCC 1 cut(s) 331
SmiMI CAYNNNNRTG 1 cut(s) 801
SmlI CTYRAG 2 cut(s) 92, 765
SmoI CTYRAG 2 cut(s) 92, 765
SphI GCATGC 1 cut(s) 616
Sse9I AATT 3 cut(s) 262, 515, 548
SsiI CCGC 2 cut(s) 334, 671
SspI AATATT 3 cut(s) 381, 475, 504
SspMI CTAG 1 cut(s) 689
StyD4I CCNGG 1 cut(s) 433
StyI CCWWGG 3 cut(s) 220, 327, 796
TaaI ACNGT 1 cut(s) 244
TaiI ACGT 3 cut(s) 209, 396, 573
TaqI TCGA 1 cut(s) 626
TasI AATT 3 cut(s) 262, 515, 548
TatI WGTACW 1 cut(s) 282
TfiI GAWTC 1 cut(s) 628
Tru1I TTAA 4 cut(s) 254, 480, 507, 639
Tru9I TTAA 4 cut(s) 254, 480, 507, 639
TscAI CASTG 4 cut(s) 247, 313, 350, 593
TseFI GTSAC 3 cut(s) 142, 238, 353
TseI GCWGC 2 cut(s) 271, 336
Tsp45I GTSAC 3 cut(s) 142, 238, 353
TspDTI ATGAA 2 cut(s) 422, 621
TspRI CASTG 4 cut(s) 247, 313, 350, 593
Tth111I GACNNNGTC 1 cut(s) 572
VpaK11BI GGWCC 1 cut(s) 331
XagI CCTNNNNNAGG 1 cut(s) 527
XapI RAATTY 1 cut(s) 262
XceI RCATGY 2 cut(s) 471, 616
XspI CTAG 1 cut(s) 689
ZrmI AGTACT 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.