Rorug05G0241900

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000572
Physical Location & Seq
Reverse (-)
25805851 .. 25806078
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0241900.1

Sequence Viewer

Length: 228 bp
ATGTTCGAGTTAAAATTGAAAGTACAAGTTTTTCTTTCTCAAGAACGAGCCTTATTTAAGCTCTTCAAAAATAACTTCAAGCATGCTTGTGTTGAAGGAGACTCTAAACTTGTTATCAATAACATCAACAACAAATGCACAACTCCCATGCGTTTTTATGCTATAATCAAAGACATAAAATCTTTTGTTGTCAAGTTTGAAGACATTTCCTTCCACCATGATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

75

Amino Acids

8.92

Weight (kDa)

9.26

Isoelectric Point (pI)

24.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 17 - 73 3.8e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 24
AgsI TTSAA 5 cut(s) 19, 67, 79, 95, 200
AluBI AGCT 1 cut(s) 61
AluI AGCT 1 cut(s) 61
Alw26I GTCTC 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 24
BsmAI GTCTC 1 cut(s) 93
BspQI GCTCTTC 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 93
BstNSI RCATGY 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 207
Cac8I GCNNGC 1 cut(s) 84
Csp6I GTAC 1 cut(s) 23
CviAII CATG 3 cut(s) 83, 148, 218
CviJI RGCY 2 cut(s) 50, 61
CviKI_1 RGCY 2 cut(s) 50, 61
CviQI GTAC 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
FaeI CATG 3 cut(s) 86, 151, 221
FaiI YATR 6 cut(s) 84, 149, 159, 164, 176, 219
FalI AAGNNNNNCTT 2 cut(s) 18, 50
FatI CATG 3 cut(s) 82, 147, 217
FspEI CC 5 cut(s) 64, 81, 159, 160, 223
Hin1II CATG 3 cut(s) 86, 151, 221
HinfI GANTC 1 cut(s) 101
Hpy188III TCNNGA 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 89, 220
HpyCH4V TGCA 1 cut(s) 138
Hsp92II CATG 3 cut(s) 86, 151, 221
LguI GCTCTTC 1 cut(s) 68
MboII GAAGA 2 cut(s) 55, 212
MluCI AATT 1 cut(s) 14
MlyI GAGTC 1 cut(s) 95
MseI TTAA 3 cut(s) 11, 57, 226
MslI CAYNNNNRTG 1 cut(s) 87
NlaIII CATG 3 cut(s) 86, 151, 221
NspI RCATGY 1 cut(s) 86
PaeI GCATGC 1 cut(s) 86
PciSI GCTCTTC 1 cut(s) 68
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 87
SapI GCTCTTC 1 cut(s) 68
SaqAI TTAA 3 cut(s) 11, 57, 226
SchI GAGTC 1 cut(s) 95
SetI ASST 1 cut(s) 63
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
SphI GCATGC 1 cut(s) 86
Sse9I AATT 1 cut(s) 14
TaqI TCGA 1 cut(s) 6
TasI AATT 1 cut(s) 14
TatI WGTACW 1 cut(s) 22
Tru1I TTAA 3 cut(s) 11, 57, 226
Tru9I TTAA 3 cut(s) 11, 57, 226
XceI RCATGY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.