Rorug04G0231300

DnaJ protein homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000572
Physical Location & Seq
Reverse (-)
39621696 .. 39623871
2176 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0231300.1

Sequence Viewer

Length: 879 bp
ATGAAAGGATTATATGAAGAGGCCAAACCATCACCCCAAATTTCAAACTCCGCATCAACTAGCGGCCATTCTAAAGAAGATGATCCAGAAATGGGTTCCAATGCATTGTCAAACAGTGCAGATCATCATGTCTTGAACAACTGTGCCTTCTTCTGTTTTCCAAGCGGAATGAATTTAAATCTCGTGCGTGCGGTTGTGGCGGAGATGGTTGGAACTTTTATCTTGATGTTCTGTGTATGTGGGATCATAGCAAGCACAGAGCTGCTGAGAGGAGATGTAGGTCTTATGGAGTATGCATCCACAGCGGGTTTAACAGTTGTAGTTGTGATTTTCTCCATAGGCTCCATCTCTGGTGCTCATGTTAACCCTGCTGTCACAGTAGCCTTTGCAACCTTTGGTCATTTCCCATGGTCCAGGGTTCCTCTATACACATTGGCACAAACATTGGGTTCTGTTCTGGCAGCATTCGTCGGAAAGCTTGTGTATGGCATAAAACCAGATCTCATGATCACCAAACCAGTACAAGGATGTGTTTCTGCCTTCTGGGTTGAGCTTATTGCGACTTTCATTGTTTTGTTCCTTGCTGCTTCTATGACACATCATGCTCAAGCTGTTGGTCCTTTATCTGGGTTTGTTGTTGGCATTGCCATTGGACTAGCTGTGCTAATCACAGGGCCTGTTTCAGGAGGATCATTGAACCCAGCAAGGTCCCTCGGACCAGCGATTGTTTCATGGAACTTCAAGGACATTTGGATATACATTTGTGCCCCAACCATTGGAGCTGTTTCAGGGGCTCTCCTTTTTCAAGTTTTAAGACTCAGAATCCCACCATGCAATCCCAGCCTCACCTCCTCTCCTAATACCTGTCTACTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
DnaJ DnaJ_C DnaJ_CXXCXGXG

Protein Analysis

292

Amino Acids

30.56

Weight (kDa)

6.63

Isoelectric Point (pI)

21.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 59 - 268 1.3e-47 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000572)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G44110 AT3G44110 AT5G22060
fragaria_vesca FvH4_3g26170 FvH4_3g26170 FvH4_3g26170 FvH4_3g26220 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270 FvH4_7g05270
malus_domestica MD02G1258400.v1.1 MD03G1159100.v1.1 MD07G1062300.v1.1 MD11G1174700.v1.1
prunus_persica Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.2G072900_v2.0.a1 Prupe.6G146900_v2.0.a1 Prupe.6G146900_v2.0.a1
pyrus_communis pycom02g21960 pycom03g11140 pycom07g04780 pycom11g14940
rosa_chinensis RchiOBHm_Chr1g0332041 RchiOBHm_Chr1g0364381 RchiOBHm_Chr4g0428981 RchiOBHm_Chr5g0049001 RchiOBHm_Chr5g0049021
rosa_laevigata RLG00000007108 RLG00000013380 RLG00000027486 RLG00000029697 RLG00000034581 RLG00000034584
rosa_multiflora Rmu_co8449175.1_g000001 Rmu_sc0000441.1_g000032 Rmu_sc0000530.1_g000003 Rmu_sc0003358.1_g000010 Rmu_sc0004058.1_g000007 Rmu_sc0004522.1_g000007 Rmu_sc0008629.1_g000009 Rmu_sc0009489.1_g000007 Rmu_sc0014815.1_g000013
rosa_roxburghii Rroxscaffold_1G00032850 Rroxscaffold_1G00032870 Rroxscaffold_4G00292340 Rroxscaffold_4G00318430 Rroxscaffold_5G00370640
rosa_rugosa Rorug01G0097800 Rorug01G0097900 Rorug01G0098000 Rorug01G0315800 Rorug04G0231300 Rorug05G0241800 Rorug05G0241900 Rorug05G0242000 Rorug05G0242100.1 Rorug05G0242200 Rorug05G0242300 Rorug06G0102700 Rorug06G0102800
rosa_samantha Rh1AG121800 Rh1BG093200 Rh1CG303100 Rh1DG127500 Rh4BG293700 Rh4DG290600 Rh5AG322000 Rh5CG357500 Rh5CG357600 Rh5DG344100 Rh6BG218000
rosa_wichuraiana Rw0G008830 Rw1G009930 Rw1G028700 Rw5G030390 Rw5G030400 Rw6G018630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 776
AccI GTMKAC 1 cut(s) 868
AciI CCGC 6 cut(s) 51, 63, 165, 191, 200, 305
AclWI GGATC 3 cut(s) 77, 251, 697
AcoI YGGCCR 1 cut(s) 64
AcsI RAATTY 2 cut(s) 39, 172
AfaI GTAC 1 cut(s) 522
AfiI CCNNNNNNNGG 5 cut(s) 92, 524, 626, 683, 776
AgsI TTSAA 5 cut(s) 45, 136, 697, 742, 806
AjnI CCWGG 1 cut(s) 413
AluBI AGCT 6 cut(s) 262, 478, 553, 611, 659, 782
AluI AGCT 6 cut(s) 262, 478, 553, 611, 659, 782
Alw21I GWGCWC 1 cut(s) 358
AlwI GGATC 3 cut(s) 77, 251, 697
AlwNI CAGNNNCTG 1 cut(s) 677
AoxI GGCC 3 cut(s) 21, 64, 674
ApeKI GCWGC 3 cut(s) 262, 461, 584
ApoI RAATTY 2 cut(s) 39, 172
AspS9I GGNCC 5 cut(s) 411, 617, 674, 708, 716
AsuHPI GGTGA 3 cut(s) 24, 502, 838
AvaII GGWCC 4 cut(s) 411, 617, 708, 716
BaeGI GKGCMC 1 cut(s) 769
BanII GRGCYC 1 cut(s) 796
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 358
BbvI GCAGC 3 cut(s) 249, 473, 571
BccI CCATC 3 cut(s) 37, 199, 353
BciT130I CCWGG 1 cut(s) 415
BclI TGATCA 1 cut(s) 507
BfaI CTAG 2 cut(s) 60, 656
BglII AGATCT 1 cut(s) 499
BisI GCNGC 4 cut(s) 64, 263, 462, 585
BlsI GCNGC 4 cut(s) 65, 264, 463, 586
Bme1390I CCNGG 1 cut(s) 415
Bme18I GGWCC 4 cut(s) 411, 617, 708, 716
BmgT120I GGNCC 5 cut(s) 411, 617, 674, 708, 716
BmiI GGNNCC 4 cut(s) 97, 343, 420, 710
BmrFI CCNGG 1 cut(s) 415
BmsI GCATC 2 cut(s) 62, 305
BpuEI CTTGAG 1 cut(s) 591
BsaJI CCNNGG 3 cut(s) 407, 414, 712
BsaXI ACNNNNNCTCC 2 cut(s) 838, 868
Bsc4I CCNNNNNNNGG 5 cut(s) 92, 524, 626, 683, 776
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 642
BseBI CCWGG 1 cut(s) 415
BseDI CCNNGG 3 cut(s) 407, 414, 712
BseGI GGATG 2 cut(s) 296, 533
BseLI CCNNNNNNNGG 5 cut(s) 92, 524, 626, 683, 776
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 2 cut(s) 257, 832
BseNI ACTGG 1 cut(s) 518
BseRI GAGGAG 2 cut(s) 285, 841
BseSI GKGCMC 1 cut(s) 769
BseXI GCAGC 3 cut(s) 249, 473, 571
BseYI CCCAGC 2 cut(s) 700, 839
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 3 cut(s) 23, 66, 676
BsiHKAI GWGCWC 1 cut(s) 358
BslFI GGGAC 1 cut(s) 694
BslI CCNNNNNNNGG 5 cut(s) 92, 524, 626, 683, 776
BsmFI GGGAC 1 cut(s) 694
BsmI GAATGC 1 cut(s) 464
BsnI GGCC 3 cut(s) 23, 66, 676
Bsp1286I GDGCHC 3 cut(s) 358, 769, 796
Bsp143I GATC 6 cut(s) 82, 121, 243, 499, 507, 689
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 6 cut(s) 51, 63, 165, 191, 200, 305
BspANI GGCC 3 cut(s) 23, 66, 676
BspCNI CTCAG 2 cut(s) 258, 831
BspHI TCATGA 1 cut(s) 504
BspLI GGNNCC 4 cut(s) 97, 343, 420, 710
BspPI GGATC 3 cut(s) 77, 251, 697
BsrDI GCAATG 1 cut(s) 642
BsrI ACTGG 1 cut(s) 518
BssECI CCNNGG 3 cut(s) 407, 414, 712
BssMI GATC 6 cut(s) 82, 121, 243, 499, 507, 689
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 407
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 415
Bst4CI ACNGT 4 cut(s) 116, 143, 316, 379
Bst6I CTCTTC 1 cut(s) 12
BstC8I GCNNGC 2 cut(s) 189, 253
BstDEI CTNAG 2 cut(s) 266, 818
BstDSI CCRYGG 1 cut(s) 407
BstENI CCTNNNNNAGG 1 cut(s) 681
BstF5I GGATG 2 cut(s) 296, 533
BstKTI GATC 6 cut(s) 85, 124, 246, 502, 510, 692
BstMBI GATC 6 cut(s) 82, 121, 243, 499, 507, 689
BstMWI GCNNNNNNNGC 3 cut(s) 197, 302, 840
BstNI CCWGG 1 cut(s) 415
BstSCI CCNGG 1 cut(s) 413
BstSLI GKGCMC 1 cut(s) 769
BstV1I GCAGC 3 cut(s) 249, 473, 571
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
BsuRI GGCC 3 cut(s) 23, 66, 676
BtgI CCRYGG 1 cut(s) 407
BtsCI GGATG 2 cut(s) 296, 533
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 2 cut(s) 189, 253
CaiI CAGNNNCTG 1 cut(s) 677
CciI TCATGA 1 cut(s) 504
Cfr13I GGNCC 5 cut(s) 411, 617, 674, 708, 716
Csp6I GTAC 1 cut(s) 521
CviAII CATG 7 cut(s) 128, 359, 408, 505, 602, 732, 831
CviQI GTAC 1 cut(s) 521
DdeI CTNAG 2 cut(s) 266, 818
DpnI GATC 6 cut(s) 84, 123, 245, 501, 509, 691
DpnII GATC 6 cut(s) 82, 121, 243, 499, 507, 689
DraI TTTAAA 1 cut(s) 177
EaeI YGGCCR 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 12
EarI CTCTTC 1 cut(s) 12
EciI GGCGGA 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 796
Eco47I GGWCC 4 cut(s) 411, 617, 708, 716
EcoNI CCTNNNNNAGG 1 cut(s) 681
EcoO109I RGGNCCY 2 cut(s) 674, 708
EcoRII CCWGG 1 cut(s) 413
EcoT14I CCWWGG 1 cut(s) 407
EcoT22I ATGCAT 2 cut(s) 106, 298
EcoT38I GRGCYC 1 cut(s) 796
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 7 cut(s) 131, 362, 411, 508, 605, 735, 834
FaqI GGGAC 1 cut(s) 694
FatI CATG 7 cut(s) 127, 358, 407, 504, 601, 731, 830
FauI CCCGC 1 cut(s) 298
FbaI TGATCA 1 cut(s) 507
FblI GTMKAC 1 cut(s) 868
Fnu4HI GCNGC 4 cut(s) 64, 263, 462, 585
FokI GGATG 2 cut(s) 283, 540
FriOI GRGCYC 1 cut(s) 796
Fsp4HI GCNGC 4 cut(s) 64, 263, 462, 585
FspBI CTAG 2 cut(s) 60, 656
GluI GCNGC 4 cut(s) 64, 263, 462, 585
GsaI CCCAGC 2 cut(s) 704, 843
HaeIII GGCC 3 cut(s) 23, 66, 676
Hin1II CATG 7 cut(s) 131, 362, 411, 508, 605, 735, 834
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 2 cut(s) 816, 822
HpaI GTTAAC 1 cut(s) 364
HphI GGTGA 3 cut(s) 24, 502, 838
Hpy166II GTNNAC 2 cut(s) 364, 869
Hpy188I TCNGA 3 cut(s) 473, 716, 821
Hpy188III TCNNGA 5 cut(s) 86, 133, 223, 505, 684
Hpy8I GTNNAC 2 cut(s) 364, 869
Hpy99I CGWCG 1 cut(s) 473
HpyAV CCTTC 2 cut(s) 157, 550
HpyCH4III ACNGT 4 cut(s) 116, 143, 316, 379
HpyCH4V TGCA 5 cut(s) 104, 119, 296, 389, 834
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 302, 840
HpyF3I CTNAG 2 cut(s) 266, 818
Hsp92II CATG 7 cut(s) 131, 362, 411, 508, 605, 735, 834
Ksp22I TGATCA 1 cut(s) 507
KspAI GTTAAC 1 cut(s) 364
Kzo9I GATC 6 cut(s) 82, 121, 243, 499, 507, 689
LmnI GCTCC 2 cut(s) 347, 779
Lsp1109I GCAGC 3 cut(s) 249, 473, 571
LweI GCATC 2 cut(s) 62, 305
MaeI CTAG 2 cut(s) 60, 656
MaeIII GTNAC 1 cut(s) 373
MalI GATC 6 cut(s) 84, 123, 245, 501, 509, 691
MboI GATC 6 cut(s) 82, 121, 243, 499, 507, 689
MboII GAAGA 3 cut(s) 29, 89, 142
MflI RGATCY 1 cut(s) 499
MhlI GDGCHC 3 cut(s) 358, 769, 796
MluCI AATT 2 cut(s) 39, 172
MlyI GAGTC 1 cut(s) 810
MmeI TCCRAC 2 cut(s) 190, 451
MnlI CCTC 8 cut(s) 13, 263, 432, 680, 722, 854, 859, 862
Mph1103I ATGCAT 2 cut(s) 106, 298
MseI TTAA 4 cut(s) 176, 311, 363, 812
MspA1I CMGCKG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 415
Mva1269I GAATGC 1 cut(s) 464
MvaI CCWGG 1 cut(s) 415
MwoI GCNNNNNNNGC 3 cut(s) 197, 302, 840
NcoI CCATGG 1 cut(s) 407
NdeII GATC 6 cut(s) 82, 121, 243, 499, 507, 689
NlaIII CATG 7 cut(s) 131, 362, 411, 508, 605, 735, 834
NlaIV GGNNCC 4 cut(s) 97, 343, 420, 710
NmuCI GTSAC 1 cut(s) 373
NsiI ATGCAT 2 cut(s) 106, 298
PagI TCATGA 1 cut(s) 504
PctI GAATGC 1 cut(s) 464
PfeI GAWTC 1 cut(s) 822
PflMI CCANNNNNTGG 1 cut(s) 776
PkrI GCNGC 4 cut(s) 65, 264, 463, 586
PleI GAGTC 1 cut(s) 810
PpsI GAGTC 1 cut(s) 810
PpuMI RGGWCCY 1 cut(s) 708
Psp5II RGGWCCY 1 cut(s) 708
Psp6I CCWGG 1 cut(s) 413
PspFI CCCAGC 2 cut(s) 700, 839
PspGI CCWGG 1 cut(s) 413
PspN4I GGNNCC 4 cut(s) 97, 343, 420, 710
PspPI GGNCC 5 cut(s) 411, 617, 674, 708, 716
PspPPI RGGWCCY 1 cut(s) 708
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 1 cut(s) 499
RsaI GTAC 1 cut(s) 522
RsaNI GTAC 1 cut(s) 521
SaqAI TTAA 4 cut(s) 176, 311, 363, 812
SatI GCNGC 4 cut(s) 64, 263, 462, 585
Sau3AI GATC 6 cut(s) 82, 121, 243, 499, 507, 689
Sau96I GGNCC 5 cut(s) 411, 617, 674, 708, 716
SchI GAGTC 1 cut(s) 810
ScrFI CCNGG 1 cut(s) 415
SduI GDGCHC 3 cut(s) 358, 769, 796
SfaNI GCATC 2 cut(s) 62, 305
SinI GGWCC 4 cut(s) 411, 617, 708, 716
SmiI ATTTAAAT 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 606
SmoI CTYRAG 1 cut(s) 606
Sse9I AATT 2 cut(s) 39, 172
SsiI CCGC 6 cut(s) 51, 63, 165, 191, 200, 305
SspMI CTAG 2 cut(s) 60, 656
StyD4I CCNGG 1 cut(s) 413
StyI CCWWGG 1 cut(s) 407
SwaI ATTTAAAT 1 cut(s) 177
TaaI ACNGT 4 cut(s) 116, 143, 316, 379
TasI AATT 2 cut(s) 39, 172
TatI WGTACW 1 cut(s) 520
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 1 cut(s) 822
Tru1I TTAA 4 cut(s) 176, 311, 363, 812
Tru9I TTAA 4 cut(s) 176, 311, 363, 812
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 3 cut(s) 262, 461, 584
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 5 cut(s) 17, 30, 185, 556, 720
TspRI CASTG 1 cut(s) 121
Van91I CCANNNNNTGG 1 cut(s) 776
VpaK11BI GGWCC 4 cut(s) 411, 617, 708, 716
XagI CCTNNNNNAGG 1 cut(s) 681
XapI RAATTY 2 cut(s) 39, 172
XmiI GTMKAC 1 cut(s) 868
XspI CTAG 2 cut(s) 60, 656
Zsp2I ATGCAT 2 cut(s) 106, 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.